NO20G01290, NO20G01290 (gene) Nannochloropsis oceanica

Overview
NameNO20G01290
Unique NameNO20G01290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1353
Alignment locationchr20:388322..389674 +

Link to JBrowse

Properties
Property NameValue
DescriptionBasic-leucine zipper domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:388322..389674 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
Homology
The following BLAST results are available for this feature:
BLAST of NO20G01290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01290.1NO20G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594661gene_6341Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100039g39gene8333Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01290.1NO20G01290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01290 ID=NO20G01290|Name=NO20G01290|organism=Nannochloropsis oceanica|type=gene|length=1353bp
ACGGCGATCGACCCGATTTGAGAGGAGACAATTGACTTGGGGGCAATATA
AATGCTAACCCCTACTATATTTTCACTCACCAAAGAGAGGAACGTGAAAG
GTTCTATCACCTTTCACACGACTAGTTGTCAGCCCTGCAAGTGTCTCACA
AACGCATCCGTGCCCTTGCCAGTGGTCCTCCTTCCTTGCTAAGACAACGC
CGGTCCACCCCGAAACTTTTTCACGACGCTCTCTATGTCAGCCCCATCCT
ACCACTCCCTTGGAAGCGCAAGCAGTAGCAGCAGCAGCAGCACTAGTACT
GGCAGCACCAACAGTGTCGAGGGAGGAGGTAATTCCTGGCCACATCAGCC
CATGCCACCAACGGCAGCCCATCGCCCTCAACGCTCGGAGGCTCAATGCG
GCACCGACATGAGCAGCAGCAACAACAGCAGCGGCGGCGGCGGTAGTCAG
CAACAAAAAGGCAATAATATAACCGAGGTGGAGCAAGAACACTGCCAGGA
CGACGAGGCGGAAGACGGGGACGGCGAGGGGGAGGGCGAAGAGGAGGGCA
TGGACGACGAAACCAAGCGGCAGAAACGCCTGGAGTTGAATCGAAAAGCA
GCACACGAAAGCCGGAAACGGAAGAAAGCAAAATATCAGCAACTTGTCGA
gtaagtgatggacggagcagccttatttgtaaagtagcgaaacgtgtgtt
tctgtaccttgcataacacaatgaacacgtttcacccttcctccttccat
tcctccctctctctcgccctccctccctttatcttttatcacagAACACT
TCAAACCCTGCGTACCGACACTCTGCAGCTCTCCGCGCAGAATGACTTGA
TGCGACAGCAGCTAGCCACGCCCCAAGCAACCAAGTACACGCCCGAAAAA
GAAGAGCTGGAAAAAGAGAACAAACAATTAAGGAATGCGCTTTTGATGGC
CTTGCAGGCGTTGGGAGAGGACGAGGAGGATGGAGAGGGGGAACGACAGC
CACCAGCTCTACAGAAGGTGAAGGAGACATGAATTCTTGCATGCTGAAGA
AAAAGGAGAAGATGGGGTAGATAAGGCGGTATGGAGGTTTGAATGGTGTG
TGCCTGTCCTTTCTAGGTATGTCTGCCTGCAAGGAGGGGGAGGATAATGA
TGAATATTCAAAATGTGTGTATGTAGGCACAGTTTTTTGAGGGGAGTGCG
AGACGAAGGACACAACACAAAGACTGCAGCAGAGAAACGAAACGAAACAA
ACAGAGGCTCGTACAGTAGTGCAGTCATTTTTCATAGGGGAAAATAACAA
CGACTAAACACGAATAATGATGTAAAGTGAACCAAGATAAAGTTTCTCCC
CTT
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protein sequence of NO20G01290.1

>NO20G01290.1-protein ID=NO20G01290.1-protein|Name=NO20G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MSAPSYHSLGSASSSSSSSTSTGSTNSVEGGGNSWPHQPMPPTAAHRPQR
SEAQCGTDMSSSNNSSGGGGSQQQKGNNITEVEQEHCQDDEAEDGDGEGE
GEEEGMDDETKRQKRLELNRKAAHESRKRKKAKYQQLVETLQTLRTDTLQ
LSAQNDLMRQQLATPQATKYTPEKEELEKENKQLRNALLMALQALGEDEE
DGEGERQPPALQKVKET*
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Synonyms
Publications