NO20G01290.1, NO20G01290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01290.1
Unique NameNO20G01290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1209
Alignment locationchr20:388322..389674 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:388322..389674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01290.1 vs.
Match: EWM22077.1 (Basic-leucine zipper domain protein [Nannochloropsis gaditana])

HSP 1 Score: 102.4 bits (254), Expect = 1.800e-18
Identity = 75/152 (49.34%), Postives = 94/152 (61.84%), Query Frame = 0 
Query:   60 SSSNNSSGGGGSQQQKGNNITEVEQEHCQD----------DEAEDGDGEGEGEEEGMDDETKRQKRLELNRKAAHESRKRKKAKYQQLVETLQTLRTDTLQLSAQNDLMRQQLATPQATKYTPEKEELEKENKQLRNALLMALQALGEDEED 202
            S S+    GG S               C D          DE ED D E E EE   D+E+KRQKRLE NRKAAHESR+RKK KYQQL E L+ LR ++LQLS Q+  MR+QLA  + T+++ E+  LE+EN++LR ALL+ALQ L EDEE+
Sbjct:   24 SQSHPQESGGPSSSPTRQPRGHATDPDCNDLDHEALPTKMDEDEDEDEEEEEEEGWEDEESKRQKRLEQNRKAAHESRQRKKIKYQQLSEALEALRAESLQLSQQSQSMREQLAATRPTRHSQERARLEEENQRLRQALLLALQGLAEDEEE 175
The following BLAST results are available for this feature:
BLAST of NO20G01290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22077.11.800e-1849.34Basic-leucine zipper domain protein [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01290NO20G01290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01290.1NO20G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01290.1.cds1NO20G01290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01290.1.cds2NO20G01290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01290.1 ID=NO20G01290.1|Name=NO20G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp
ACGGCGATCGACCCGATTTGAGAGGAGACAATTGACTTGGGGGCAATATA
AATGCTAACCCCTACTATATTTTCACTCACCAAAGAGAGGAACGTGAAAG
GTTCTATCACCTTTCACACGACTAGTTGTCAGCCCTGCAAGTGTCTCACA
AACGCATCCGTGCCCTTGCCAGTGGTCCTCCTTCCTTGCTAAGACAACGC
CGGTCCACCCCGAAACTTTTTCACGACGCTCTCTATGTCAGCCCCATCCT
ACCACTCCCTTGGAAGCGCAAGCAGTAGCAGCAGCAGCAGCACTAGTACT
GGCAGCACCAACAGTGTCGAGGGAGGAGGTAATTCCTGGCCACATCAGCC
CATGCCACCAACGGCAGCCCATCGCCCTCAACGCTCGGAGGCTCAATGCG
GCACCGACATGAGCAGCAGCAACAACAGCAGCGGCGGCGGCGGTAGTCAG
CAACAAAAAGGCAATAATATAACCGAGGTGGAGCAAGAACACTGCCAGGA
CGACGAGGCGGAAGACGGGGACGGCGAGGGGGAGGGCGAAGAGGAGGGCA
TGGACGACGAAACCAAGCGGCAGAAACGCCTGGAGTTGAATCGAAAAGCA
GCACACGAAAGCCGGAAACGGAAGAAAGCAAAATATCAGCAACTTGTCGA
AACACTTCAAACCCTGCGTACCGACACTCTGCAGCTCTCCGCGCAGAATG
ACTTGATGCGACAGCAGCTAGCCACGCCCCAAGCAACCAAGTACACGCCC
GAAAAAGAAGAGCTGGAAAAAGAGAACAAACAATTAAGGAATGCGCTTTT
GATGGCCTTGCAGGCGTTGGGAGAGGACGAGGAGGATGGAGAGGGGGAAC
GACAGCCACCAGCTCTACAGAAGGTGAAGGAGACATGAATTCTTGCATGC
TGAAGAAAAAGGAGAAGATGGGGTAGATAAGGCGGTATGGAGGTTTGAAT
GGTGTGTGCCTGTCCTTTCTAGGTATGTCTGCCTGCAAGGAGGGGGAGGA
TAATGATGAATATTCAAAATGTGTGTATGTAGGCACAGTTTTTTGAGGGG
AGTGCGAGACGAAGGACACAACACAAAGACTGCAGCAGAGAAACGAAACG
AAACAAACAGAGGCTCGTACAGTAGTGCAGTCATTTTTCATAGGGGAAAA
TAACAACGACTAAACACGAATAATGATGTAAAGTGAACCAAGATAAAGTT
TCTCCCCTT
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protein sequence of NO20G01290.1

>NO20G01290.1-protein ID=NO20G01290.1-protein|Name=NO20G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MSAPSYHSLGSASSSSSSSTSTGSTNSVEGGGNSWPHQPMPPTAAHRPQR
SEAQCGTDMSSSNNSSGGGGSQQQKGNNITEVEQEHCQDDEAEDGDGEGE
GEEEGMDDETKRQKRLELNRKAAHESRKRKKAKYQQLVETLQTLRTDTLQ
LSAQNDLMRQQLATPQATKYTPEKEELEKENKQLRNALLMALQALGEDEE
DGEGERQPPALQKVKET*
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mRNA from alignment at chr20:388322..389674+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01290.1 ID=NO20G01290.1|Name=NO20G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1353bp|location=Sequence derived from alignment at chr20:388322..389674+ (Nannochloropsis oceanica)
ACGGCGATCGACCCGATTTGAGAGGAGACAATTGACTTGGGGGCAATATA
AATGCTAACCCCTACTATATTTTCACTCACCAAAGAGAGGAACGTGAAAG
GTTCTATCACCTTTCACACGACTAGTTGTCAGCCCTGCAAGTGTCTCACA
AACGCATCCGTGCCCTTGCCAGTGGTCCTCCTTCCTTGCTAAGACAACGC
CGGTCCACCCCGAAACTTTTTCACGACGCTCTCTATGTCAGCCCCATCCT
ACCACTCCCTTGGAAGCGCAAGCAGTAGCAGCAGCAGCAGCACTAGTACT
GGCAGCACCAACAGTGTCGAGGGAGGAGGTAATTCCTGGCCACATCAGCC
CATGCCACCAACGGCAGCCCATCGCCCTCAACGCTCGGAGGCTCAATGCG
GCACCGACATGAGCAGCAGCAACAACAGCAGCGGCGGCGGCGGTAGTCAG
CAACAAAAAGGCAATAATATAACCGAGGTGGAGCAAGAACACTGCCAGGA
CGACGAGGCGGAAGACGGGGACGGCGAGGGGGAGGGCGAAGAGGAGGGCA
TGGACGACGAAACCAAGCGGCAGAAACGCCTGGAGTTGAATCGAAAAGCA
GCACACGAAAGCCGGAAACGGAAGAAAGCAAAATATCAGCAACTTGTCGA
GTAAGTGATGGACGGAGCAGCCTTATTTGTAAAGTAGCGAAACGTGTGTT
TCTGTACCTTGCATAACACAATGAACACGTTTCACCCTTCCTCCTTCCAT
TCCTCCCTCTCTCTCGCCCTCCCTCCCTTTATCTTTTATCACAGAACACT
TCAAACCCTGCGTACCGACACTCTGCAGCTCTCCGCGCAGAATGACTTGA
TGCGACAGCAGCTAGCCACGCCCCAAGCAACCAAGTACACGCCCGAAAAA
GAAGAGCTGGAAAAAGAGAACAAACAATTAAGGAATGCGCTTTTGATGGC
CTTGCAGGCGTTGGGAGAGGACGAGGAGGATGGAGAGGGGGAACGACAGC
CACCAGCTCTACAGAAGGTGAAGGAGACATGAATTCTTGCATGCTGAAGA
AAAAGGAGAAGATGGGGTAGATAAGGCGGTATGGAGGTTTGAATGGTGTG
TGCCTGTCCTTTCTAGGTATGTCTGCCTGCAAGGAGGGGGAGGATAATGA
TGAATATTCAAAATGTGTGTATGTAGGCACAGTTTTTTGAGGGGAGTGCG
AGACGAAGGACACAACACAAAGACTGCAGCAGAGAAACGAAACGAAACAA
ACAGAGGCTCGTACAGTAGTGCAGTCATTTTTCATAGGGGAAAATAACAA
CGACTAAACACGAATAATGATGTAAAGTGAACCAAGATAAAGTTTCTCCC
CTT
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Coding sequence (CDS) from alignment at chr20:388322..389674+

>NO20G01290.1 ID=NO20G01290.1|Name=NO20G01290.1|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at chr20:388322..389674+ (Nannochloropsis oceanica)
ATGTCAGCCCCATCCTACCACTCCCTTGGAAGCGCAAGCAGTAGCAGCAG
CAGCAGCACTAGTACTGGCAGCACCAACAGTGTCGAGGGAGGAGGTAATT
CCTGGCCACATCAGCCCATGCCACCAACGGCAGCCCATCGCCCTCAACGC
TCGGAGGCTCAATGCGGCACCGACATGAGCAGCAGCAACAACAGCAGCGG
CGGCGGCGGTAGTCAGCAACAAAAAGGCAATAATATAACCGAGGTGGAGC
AAGAACACTGCCAGGACGACGAGGCGGAAGACGGGGACGGCGAGGGGGAG
GGCGAAGAGGAGGGCATGGACGACGAAACCAAGCGGCAGAAACGCCTGGA
GTTGAATCGAAAAGCAGCACACGAAAGCCGGAAACGGAAGAAAGCAAAAT
ATCAGCAACTTGTCGAAACACTTCAAACCCTGCGTACCGACACTCTGCAG
CTCTCCGCGCAGAATGACTTGATGCGACAGCAGCTAGCCACGCCCCAAGC
AACCAAGTACACGCCCGAAAAAGAAGAGCTGGAAAAAGAGAACAAACAAT
TAAGGAATGCGCTTTTGATGGCCTTGCAGGCGTTGGGAGAGGACGAGGAG
GATGGAGAGGGGGAACGACAGCCACCAGCTCTACAGAAGGTGAAGGAGAC
ATGA
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Synonyms
Publications