NO20G01260, NO20G01260 (gene) Nannochloropsis oceanica

Overview
NameNO20G01260
Unique NameNO20G01260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length729
Alignment locationchr20:384276..385004 -

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Properties
Property NameValue
DescriptionPhosphatidic acid phosphatase (PAP2) family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:384276..385004 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036938P_Acid_Pase_2/haloperoxi_sf
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO20G01260 vs. NCBI_GenBank
Match: XP_005854490.1 (dolichyldiphosphatase, partial [Nannochloropsis gaditana CCMP526] >XP_005855565.1 dolichyldiphosphatase, partial [Nannochloropsis gaditana CCMP526] >EKU20796.1 dolichyldiphosphatase, partial [Nannochloropsis gaditana CCMP526] >EKU21871.1 dolichyldiphosphatase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 211.5 bits (537), Expect = 3.000e-51
Identity = 111/166 (66.87%), Postives = 132/166 (79.52%), Query Frame = 0
Query:    8 STPPPSSPFSSSFSQSTLLKGFELVGKSTRWTVASLVAVVLLLRRDAAMVNFTVGAILNALLGKTLKRIIKEARPDGAVLEDPGMPSSHAMALFYMTSFITAALCESKGLGGALPLWWPFNYITTISSVILYVLTASSWRVFSGLHTPAQILVGAXXXXXXXXXWQ 174
            S+PPPSS  S   S    L+ F+L+GKSTRWTVASLVAV+LL+RRDAA+VNFTVGAILNA+LGK LKR+IKEARPDGAVLEDPGMPSSHAMALFYM++F+ +ALC+ +G+ G LP WWP + + TI+   LYV  AS+WRVFSGLHT AQILVGA         W+
Sbjct:  109 SSPPPSSLMSFKTSS---LQAFQLLGKSTRWTVASLVAVMLLVRRDAAIVNFTVGAILNAMLGKILKRLIKEARPDGAVLEDPGMPSSHAMALFYMSAFLGSALCQKRGI-GVLPPWWPLDVLPTIALGGLYVSVASAWRVFSGLHTSAQILVGAGVGGGVGLAWE 270          
BLAST of NO20G01260 vs. NCBI_GenBank
Match: CEL96694.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 133.7 bits (335), Expect = 7.900e-28
Identity = 81/234 (34.62%), Postives = 125/234 (53.42%), Query Frame = 0
Query:   13 SSPFSSSFSQSTLLKGFELVGKSTRWTVASLVAVVLLLRRDAAMVNFTVGAILNALLGKTLKRIIKEARPDGAVLEDPGMPSSHAMALFYMTSFITAALCESKGLGGALPLWWPFNYITTISSVILYVLTASSWRVFSGLHTPAQILVGAXXXXXXXXXWQFKCRTRMNEEVGRWLYARFEGGRVPLSYLVGVMIIGALTVGSVERKFAKAMRQILRYVG------EEEGRKDK 241
            S+    +F    +     L G S R+ V+ LV + L++RRDAA+  + +G++LNA+LGK LKR+   +RPD A + DPGMPSSHAM+L +++  +  A+ ++      LP WW  +    +  V  Y L ++ WRV + LHT  Q+ VG          W    +  +N+ + R          +P  +LVG+ ++G+LTVGSVERK  K    ++R  G      +   RKDK
Sbjct:  114 STMVGEAFFDGAIAPLMALCGLSARFLVSGLVFLALVMRRDAAVTVWVIGSLLNAVLGKVLKRLFNHSRPDEATVSDPGMPSSHAMSLSFLSVSLIRAIIDA----DRLPAWWRLDKRWAVVLVSSYALLSAVWRVRANLHTSEQVAVGGAVGGTVGLVWYQLGKNGINKWMERQFVLMTGKPLLPWGWLVGICLLGSLTVGSVERKIHKL---LVRLTGGAVKRDDSSDRKDK 340          
BLAST of NO20G01260 vs. NCBI_GenBank
Match: XP_005838618.1 (hypothetical protein GUITHDRAFT_134529 [Guillardia theta CCMP2712] >EKX51638.1 hypothetical protein GUITHDRAFT_134529 [Guillardia theta CCMP2712])

HSP 1 Score: 130.6 bits (327), Expect = 6.700e-27
Identity = 78/197 (39.59%), Postives = 117/197 (59.39%), Query Frame = 0
Query:   32 VGKSTRWTVASLVAVVLLLRRDAAMVNFTVGAILNALLGKTLKRIIKEARPDGAVLEDPGMPSSHAMALFYMTSFITAALCESKGLGGALPLW--WPFNYITTI-SSVILYVLTASSWRVFSGLHTPAQILVGAXXXXXXXXXWQFKCRTRMNEEVGRWLYARFEGGRVPLSYLVGVMIIGALTVGSVERKFAKAMR 226
            + K+TRW V+   A  L+ RRDA  +    GA+ NA LGK LKR++ E RPDGA + DPGMPSSHAM+LF+++ +++A          A+ +W  WP    T + SS++++   +++WRV +G HTPAQILVG+         W +     M       ++ + E   +P + L G +I+GAL VGSVERK +K ++
Sbjct:   25 IAKNTRWLVSLTAAAFLIWRRDAVTIAAIGGALGNAALGKLLKRLLAEKRPDGAPVSDPGMPSSHAMSLFFLSLYLSA----------AINVWTDWPMAARTIVTSSLLIFSTYSAAWRVRAGFHTPAQILVGSVLGGFNGMAWFYFNHQNMAALQRLDVFLK-ESSALPWA-LCGSLIVGALLVGSVERKISKFLK 209          
BLAST of NO20G01260 vs. NCBI_GenBank
Match: XP_005782275.1 (hypothetical protein EMIHUDRAFT_233403 [Emiliania huxleyi CCMP1516] >EOD29846.1 hypothetical protein EMIHUDRAFT_233403 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 104.4 bits (259), Expect = 5.200e-19
Identity = 80/201 (39.80%), Postives = 102/201 (50.75%), Query Frame = 0
Query:   36 TRWTVASLVAVVLLLRRDAAMVNFTVGAILNALLGKTLKRIIKEARPDGAVLEDPGMPSSHAMALFYMTSFIT--AALCESKGLGGALPLWWPFNYIT---------TISSVILYVLTASSWRVFSGLHTPAQILVGAXXXXXXXXXWQFKCRTRMNEEVGRWLYARFEGGRVPLSYLVGVMIIGALTVGSVERKFAKAMR 226
            T+W V+    +VLL+RRDAA V F  GAI NALL K LKR+I  ARP GA L DPGMPSSHA +L Y   F+   A   E+      L L  P   ++          +S  +   LTA   RV +GLHTPAQ  VGA           F     +       L  +    R P++ + GV+++GA  VGSVER  A  M+
Sbjct:    6 TKWLVSGSAFIVLLVRRDAATVTFLCGAIGNALLSKVLKRLINAARPAGARLSDPGMPSSHAQSLSYFAVFLALGAETWEATLPPRLLHLSRPLMLLSPPLLRHAGAALSLALGAALTA--LRVRAGLHTPAQCAVGAAIGGLNGACCFFTMPACV-------LALQALQARHPVALVGGVLLLGAAVVGSVERTLAARMK 197          
BLAST of NO20G01260 vs. NCBI_GenBank
Match: XP_002521546.1 (PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic [Ricinus communis] >EEF40817.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 99.0 bits (245), Expect = 2.200e-17
Identity = 63/193 (32.64%), Postives = 98/193 (50.78%), Query Frame = 0
Query:   17 SSSFSQSTLLKGFE-LVGKSTRWTVASLVAVVLLLRRDAAMVNFTVGAILNALLGKTLKRIIKEARPDGAVLEDPGMPSSHAMALFYMTSFITAALCESKGLGGALPLWWPFNYITTISSVILYVLTASSW-RVFSGLHTPAQILVGAXXXXXXXXXWQFKCRTRMNEEVGRWLYARFEGGRVPLSYLVGVMI 208
            SS F    + +GFE L+ + ++W VA+L  VVLL R DA  +   +G++LNA+L  TLKR+  + RP      DPGMPSSHA  +FY   F + ++ E  G+           +   IS + L + +  SW RV    HT +Q++VGA         W +  +T + +E    L+ R        S+ +G ++
Sbjct:   85 SSDFRSQLMARGFEPLLNRLSKWLVAALFGVVLLWRHDAEALWIAMGSVLNAILSVTLKRVFNQERPFATAKSDPGMPSSHAQCIFYTVVFCSLSVTEWLGVN---------EFTLLISGLNLALGSYFSWLRVSQQYHTASQVVVGAAAGSLFSFLWYWLWQTIVLDEFNSSLWVRIVVVFAAFSFCLGFLL 268          
BLAST of NO20G01260 vs. NCBI_GenBank
Match: XP_009040747.1 (hypothetical protein AURANDRAFT_67050 [Aureococcus anophagefferens] >EGB04642.1 hypothetical protein AURANDRAFT_67050 [Aureococcus anophagefferens])

HSP 1 Score: 94.7 bits (234), Expect = 4.100e-16
Identity = 67/193 (34.72%), Postives = 98/193 (50.78%), Query Frame = 0
Query:   26 LKGFELVGKSTRWTVASLVAVVLLLRRDAAMVNFTVGAILNALLGKTLKRIIKEARPDGAVLEDPGMPSSHAMALFYMTSFITAALCESKGLGGALPLWWPFNYITTISSVILYVLTASSWRVFSGLHTPAQILVGAXXXXXXXXXWQFKCRTRMNEEVGRWLYARFEGGRVPLSYLVGVMIIGALTVGSVER 219
            ++ FE VG+STR+ V+  VA  LL RRDA  + + +GAIL A+  K LKRIIKE RP     +D GMPSSHA ++ ++            G+G  L    P      +++   Y L + +WRV +  HT AQ++VGA           F   T +                +PL +++ V  +GA+ VGS+ER
Sbjct:  764 MRAFEAVGESTRFAVSGAVATTLLARRDAETLLWVLGAILAAVCNKVLKRIIKEERPTEG--DDGGMPSSHACSVLHL------------GVGAVLRFPMPPGLPAALAA---YGLVSLAWRVHARYHTTAQVVVGA----------AFGAATAVLFRAASLRLEPALPATIPLPWILSVYGVGAVVVGSLER 929          
BLAST of NO20G01260 vs. NCBI_GenBank
Match: CBJ30239.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 94.0 bits (232), Expect = 7.000e-16
Identity = 58/157 (36.94%), Postives = 75/157 (47.77%), Query Frame = 0
Query:   24 TLLKGFEL----VGKSTRWTVASLVAVVLLLRRDAAMVNFTVGAILNALLGKTLKRIIKEARPDGAVLEDPGMPSSHAMALFYMTSFITAALCESKGLGGALPLWWPFNYITTISSVILYVLTASSWRVFSGLHTPAQILVGAXXXXXXXXXWQFKC 177
            TLL G EL    +G ST+W VA  V V L+ R D   + + +G+++NA+  K LK+ I + RPDGA L DPGMPSSHAM                                 T + + +Y LTAS WRV +G HT  Q+ VGA         W   C
Sbjct:    6 TLLAGIELGLDVLGSSTQWAVAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKKTINQVRPDGAQLSDPGMPSSHAM---------------------------------TQTLLGMYALTASLWRVKAGFHTLPQVAVGAAVGAVDAVLWYHLC 129          
BLAST of NO20G01260 vs. NCBI_GenBank
Match: XP_021912435.1 (lipid phosphate phosphatase epsilon 1, chloroplastic-like [Carica papaya])

HSP 1 Score: 90.9 bits (224), Expect = 5.900e-15
Identity = 57/173 (32.95%), Postives = 90/173 (52.02%), Query Frame = 0
Query:   21 SQSTLLKGFE-LVGKSTRWTVASLVAVVLLLRRDAAMVNFTVGAILNALLGKTLKRIIKEARPDGAVLEDPGMPSSHAMALFYMTSFITAALCESKGLGGALPLWWPFNYITTISSVILYVLTASSW-RVFSGLHTPAQILVGAXXXXXXXXXWQFKCRTRMNEEVGRWLYAR 192
            S   L  GFE ++ + ++W VA+L   V+L R DA  +   +G+++NA+L   LKRI+ + RP   +  DPGMPSSHA ++FY + F   ++ E  G+           +  TI+ +IL   +  SW RV   LHT +QI VGA         W    +  ++E    +L+ +
Sbjct:   93 SNGLLASGFESILNRLSKWLVAALFGGVILWRHDAEALWVAMGSVINAMLSVVLKRILNQERPFSTMRSDPGMPSSHAQSIFYTSMFAVLSVVEWLGIN---------EFSLTINGLILAFGSYLSWLRVSQRLHTISQIGVGAAVGSLFSILWYLFWKAIVSEAFASYLWVQ 256          
BLAST of NO20G01260 vs. NCBI_GenBank
Match: PIN15770.1 (Dolichyl pyrophosphate phosphatase [Handroanthus impetiginosus])

HSP 1 Score: 90.5 bits (223), Expect = 7.700e-15
Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 0
Query:   19 SFSQSTLLKGF---------ELVGKSTRWTVASLVAVVLLLRRDAAMVNFTVGAILNALLGKTLKRIIKEARPDGAVLEDPGMPSSHAMALFYMTSFITAALCESKGLGGALPLWWPFNYITTISSVILYVL-TASSW-RVFSGLHTPAQILVGAXXXXXXXXXW 173
            +F Q  L++G           ++   ++W VA L + ++LLR DA  +   +GA+LNA+L   LK+++ + RP   +  DPGMPSSHA ++FY  +F+  ++ E          W+  N +TT  S   ++L +  SW RV   LHT  Q++VGA         W
Sbjct:   75 AFEQEALVEGSLTFADGGLEAILNSLSKWFVAVLFSALILLRHDAEALWAAMGAVLNAILSIALKKVLNQERPTSTLRSDPGMPSSHAQSIFYTIAFLNLSIVE----------WYAMNILTTTLSGFFFILGSYFSWLRVSQKLHTLGQVIVGAVIGTLFSIFW 229          
BLAST of NO20G01260 vs. NCBI_GenBank
Match: XP_011083196.1 (lipid phosphate phosphatase epsilon 2, chloroplastic isoform X1 [Sesamum indicum])

HSP 1 Score: 88.6 bits (218), Expect = 2.900e-14
Identity = 50/129 (38.76%), Postives = 77/129 (59.69%), Query Frame = 0
Query:   36 TRWTVASLVAVVLLLRRDAAMVNFTVGAILNALLGKTLKRIIKEARPDGAVLEDPGMPSSHAMALFYMTSFITAALCESKGLGGALPLWWPFNYIT-TISSVILYVLTASSW-RVFSGLHTPAQILVGA 163
            ++W V++L A ++L R DA  +   +GA+LNA+L  TLK+++ + RP      DPGMPSSHA ++FY  +F+  ++ E          W+  N +T T+S   L V +  SW RV   LHT +Q++VGA
Sbjct:   97 SKWFVSALFAAIILWRHDAEALWAAMGAVLNAVLSITLKKVLNQERPISTSRSDPGMPSSHAQSIFYTITFLNLSMLE----------WYGVNALTATLSGFFLIVGSYFSWLRVSQRLHTLSQVIVGA 215          
The following BLAST results are available for this feature:
BLAST of NO20G01260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854490.13.000e-5166.87dolichyldiphosphatase, partial [Nannochloropsis ga... [more]
CEL96694.17.900e-2834.62unnamed protein product [Vitrella brassicaformis C... [more]
XP_005838618.16.700e-2739.59hypothetical protein GUITHDRAFT_134529 [Guillardia... [more]
XP_005782275.15.200e-1939.80hypothetical protein EMIHUDRAFT_233403 [Emiliania ... [more]
XP_002521546.12.200e-1732.64PREDICTED: lipid phosphate phosphatase epsilon 2, ... [more]
XP_009040747.14.100e-1634.72hypothetical protein AURANDRAFT_67050 [Aureococcus... [more]
CBJ30239.17.000e-1636.94conserved unknown protein [Ectocarpus siliculosus][more]
XP_021912435.15.900e-1532.95lipid phosphate phosphatase epsilon 1, chloroplast... [more]
PIN15770.17.700e-1532.73Dolichyl pyrophosphate phosphatase [Handroanthus i... [more]
XP_011083196.12.900e-1438.76lipid phosphate phosphatase epsilon 2, chloroplast... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002658NSK002658Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01260.1NO20G01260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594655gene_6338Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01260.1NO20G01260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01260 ID=NO20G01260|Name=NO20G01260|organism=Nannochloropsis oceanica|type=gene|length=729bp
ATGAGAAGCATCAAGGCTTCCTCCACCCCTCCTCCTTCTTCTCCCTTTTC
GTCCTCATTTTCCCAGAGCACTCTCCTTAAGGGCTTCGAGCTCGTCGGAA
AATCAACTCGGTGGACAGTTGCCAGCTTAGTGGCTGTTGTCCTTCTCTTG
CGACGGGACGCGGCCATGGTTAACTTCACCGTCGGTGCCATTTTAAATGC
TTTGCTTGGTAAGACGCTCAAGAGAATAATCAAGGAAGCCCGGCCTGATG
GTGCGGTTCTTGAAGACCCCGGCATGCCCAGCTCGCATGCCATGGCGTTG
TTCTATATGACTAGCTTTATAACGGCTGCCTTGTGTGAGAGTAAGGGGTT
AGGGGGAGCTCTCCCTCTTTGGTGGCCTTTCAACTACATCACAACCATTT
CCTCGGTCATATTGTACGTGCTGACAGCAAGCTCATGGCGGGTCTTTTCG
GGGTTACACACACCAGCGCAAATTTTGGTGGGAGCAGGGATGGGGAGTGG
GGTGGGAGTCGGGTGGCAGTTTAAGTGTCGGACACGGATGAATGAGGAGG
TGGGGAGGTGGTTGTACGCGAGGTTTGAGGGAGGGCGGGTGCCATTATCG
TACTTGGTGGGGGTGATGATTATAGGAGCGTTGACAGTGGGTTCTGTAGA
GAGGAAGTTTGCGAAGGCGATGAGGCAGATATTGCGTTATGTAGGAGAGG
AGGAAGGGAGGAAGGACAAGGGACTGTGA
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protein sequence of NO20G01260.1

>NO20G01260.1-protein ID=NO20G01260.1-protein|Name=NO20G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MRSIKASSTPPPSSPFSSSFSQSTLLKGFELVGKSTRWTVASLVAVVLLL
RRDAAMVNFTVGAILNALLGKTLKRIIKEARPDGAVLEDPGMPSSHAMAL
FYMTSFITAALCESKGLGGALPLWWPFNYITTISSVILYVLTASSWRVFS
GLHTPAQILVGAGMGSGVGVGWQFKCRTRMNEEVGRWLYARFEGGRVPLS
YLVGVMIIGALTVGSVERKFAKAMRQILRYVGEEEGRKDKGL*
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Synonyms
Publications