NO20G01260.1, NO20G01260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01260.1
Unique NameNO20G01260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length729
Alignment locationchr20:384276..385004 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:384276..385004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01260.1 vs.
Match: XP_005854490.1 (dolichyldiphosphatase, partial [Nannochloropsis gaditana CCMP526]; XP_005855565.1 dolichyldiphosphatase, partial [Nannochloropsis gaditana CCMP526]; EKU20796.1 dolichyldiphosphatase, partial [Nannochloropsis gaditana CCMP526]; EKU21871.1 dolichyldiphosphatase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 225.3 bits (573), Expect = 2.000e-55
Identity = 116/166 (69.88%), Postives = 139/166 (83.73%), Query Frame = 0 
Query:    8 STPPPSSPFSSSFSQSTLLKGFELVGKSTRWTVASLVAVVLLLRRDAAMVNFTVGAILNALLGKTLKRIIKEARPDGAVLEDPGMPSSHAMALFYMTSFITAALCESKGLGGALPLWWPFNYITTISSVILYVLTASSWRVFSGLHTPAQILVGAGMGSGVGVGWQ 174
            S+PPPSS  S   S    L+ F+L+GKSTRWTVASLVAV+LL+RRDAA+VNFTVGAILNA+LGK LKR+IKEARPDGAVLEDPGMPSSHAMALFYM++F+ +ALC+ +G+ G LP WWP + + TI+   LYV  AS+WRVFSGLHT AQILVGAG+G GVG+ W+
Sbjct:  109 SSPPPSSLMSFKTSS---LQAFQLLGKSTRWTVASLVAVMLLVRRDAAIVNFTVGAILNAMLGKILKRLIKEARPDGAVLEDPGMPSSHAMALFYMSAFLGSALCQKRGI-GVLPPWWPLDVLPTIALGGLYVSVASAWRVFSGLHTSAQILVGAGVGGGVGLAWE 270
The following BLAST results are available for this feature:
BLAST of NO20G01260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854490.12.000e-5569.88dolichyldiphosphatase, partial [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01260NO20G01260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01260.1NO20G01260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01260.1.cds1NO20G01260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01260.1 ID=NO20G01260.1|Name=NO20G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=729bp
ATGAGAAGCATCAAGGCTTCCTCCACCCCTCCTCCTTCTTCTCCCTTTTC
GTCCTCATTTTCCCAGAGCACTCTCCTTAAGGGCTTCGAGCTCGTCGGAA
AATCAACTCGGTGGACAGTTGCCAGCTTAGTGGCTGTTGTCCTTCTCTTG
CGACGGGACGCGGCCATGGTTAACTTCACCGTCGGTGCCATTTTAAATGC
TTTGCTTGGTAAGACGCTCAAGAGAATAATCAAGGAAGCCCGGCCTGATG
GTGCGGTTCTTGAAGACCCCGGCATGCCCAGCTCGCATGCCATGGCGTTG
TTCTATATGACTAGCTTTATAACGGCTGCCTTGTGTGAGAGTAAGGGGTT
AGGGGGAGCTCTCCCTCTTTGGTGGCCTTTCAACTACATCACAACCATTT
CCTCGGTCATATTGTACGTGCTGACAGCAAGCTCATGGCGGGTCTTTTCG
GGGTTACACACACCAGCGCAAATTTTGGTGGGAGCAGGGATGGGGAGTGG
GGTGGGAGTCGGGTGGCAGTTTAAGTGTCGGACACGGATGAATGAGGAGG
TGGGGAGGTGGTTGTACGCGAGGTTTGAGGGAGGGCGGGTGCCATTATCG
TACTTGGTGGGGGTGATGATTATAGGAGCGTTGACAGTGGGTTCTGTAGA
GAGGAAGTTTGCGAAGGCGATGAGGCAGATATTGCGTTATGTAGGAGAGG
AGGAAGGGAGGAAGGACAAGGGACTGTGA
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protein sequence of NO20G01260.1

>NO20G01260.1-protein ID=NO20G01260.1-protein|Name=NO20G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MRSIKASSTPPPSSPFSSSFSQSTLLKGFELVGKSTRWTVASLVAVVLLL
RRDAAMVNFTVGAILNALLGKTLKRIIKEARPDGAVLEDPGMPSSHAMAL
FYMTSFITAALCESKGLGGALPLWWPFNYITTISSVILYVLTASSWRVFS
GLHTPAQILVGAGMGSGVGVGWQFKCRTRMNEEVGRWLYARFEGGRVPLS
YLVGVMIIGALTVGSVERKFAKAMRQILRYVGEEEGRKDKGL*
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mRNA from alignment at chr20:384276..385004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01260.1 ID=NO20G01260.1|Name=NO20G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=729bp|location=Sequence derived from alignment at chr20:384276..385004- (Nannochloropsis oceanica)
ATGAGAAGCATCAAGGCTTCCTCCACCCCTCCTCCTTCTTCTCCCTTTTC
GTCCTCATTTTCCCAGAGCACTCTCCTTAAGGGCTTCGAGCTCGTCGGAA
AATCAACTCGGTGGACAGTTGCCAGCTTAGTGGCTGTTGTCCTTCTCTTG
CGACGGGACGCGGCCATGGTTAACTTCACCGTCGGTGCCATTTTAAATGC
TTTGCTTGGTAAGACGCTCAAGAGAATAATCAAGGAAGCCCGGCCTGATG
GTGCGGTTCTTGAAGACCCCGGCATGCCCAGCTCGCATGCCATGGCGTTG
TTCTATATGACTAGCTTTATAACGGCTGCCTTGTGTGAGAGTAAGGGGTT
AGGGGGAGCTCTCCCTCTTTGGTGGCCTTTCAACTACATCACAACCATTT
CCTCGGTCATATTGTACGTGCTGACAGCAAGCTCATGGCGGGTCTTTTCG
GGGTTACACACACCAGCGCAAATTTTGGTGGGAGCAGGGATGGGGAGTGG
GGTGGGAGTCGGGTGGCAGTTTAAGTGTCGGACACGGATGAATGAGGAGG
TGGGGAGGTGGTTGTACGCGAGGTTTGAGGGAGGGCGGGTGCCATTATCG
TACTTGGTGGGGGTGATGATTATAGGAGCGTTGACAGTGGGTTCTGTAGA
GAGGAAGTTTGCGAAGGCGATGAGGCAGATATTGCGTTATGTAGGAGAGG
AGGAAGGGAGGAAGGACAAGGGACTGTGA
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Coding sequence (CDS) from alignment at chr20:384276..385004-

>NO20G01260.1 ID=NO20G01260.1|Name=NO20G01260.1|organism=Nannochloropsis oceanica|type=CDS|length=729bp|location=Sequence derived from alignment at chr20:384276..385004- (Nannochloropsis oceanica)
ATGAGAAGCATCAAGGCTTCCTCCACCCCTCCTCCTTCTTCTCCCTTTTC
GTCCTCATTTTCCCAGAGCACTCTCCTTAAGGGCTTCGAGCTCGTCGGAA
AATCAACTCGGTGGACAGTTGCCAGCTTAGTGGCTGTTGTCCTTCTCTTG
CGACGGGACGCGGCCATGGTTAACTTCACCGTCGGTGCCATTTTAAATGC
TTTGCTTGGTAAGACGCTCAAGAGAATAATCAAGGAAGCCCGGCCTGATG
GTGCGGTTCTTGAAGACCCCGGCATGCCCAGCTCGCATGCCATGGCGTTG
TTCTATATGACTAGCTTTATAACGGCTGCCTTGTGTGAGAGTAAGGGGTT
AGGGGGAGCTCTCCCTCTTTGGTGGCCTTTCAACTACATCACAACCATTT
CCTCGGTCATATTGTACGTGCTGACAGCAAGCTCATGGCGGGTCTTTTCG
GGGTTACACACACCAGCGCAAATTTTGGTGGGAGCAGGGATGGGGAGTGG
GGTGGGAGTCGGGTGGCAGTTTAAGTGTCGGACACGGATGAATGAGGAGG
TGGGGAGGTGGTTGTACGCGAGGTTTGAGGGAGGGCGGGTGCCATTATCG
TACTTGGTGGGGGTGATGATTATAGGAGCGTTGACAGTGGGTTCTGTAGA
GAGGAAGTTTGCGAAGGCGATGAGGCAGATATTGCGTTATGTAGGAGAGG
AGGAAGGGAGGAAGGACAAGGGACTGTGA
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Synonyms
Publications