NO20G01190, NO20G01190 (gene) Nannochloropsis oceanica

Overview
NameNO20G01190
Unique NameNO20G01190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2090
Alignment locationchr20:364555..366644 +

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Properties
Property NameValue
DescriptionSnf7 family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:364555..366644 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Homology
BLAST of NO20G01190 vs. NCBI_GenBank
Match: EWM22136.1 (snf7 family protein [Nannochloropsis gaditana])

HSP 1 Score: 209.5 bits (532), Expect = 1.100e-50
Identity = 112/147 (76.19%), Postives = 125/147 (85.03%), Query Frame = 0
Query:    2 FGFGKKLDPVEEAKKWKRNIGREVRXXXXXXXXXXXXXXXXXXEIKKLAKEGDSRRGALTILAKDLVRSRKTREKMVGGKAMLTSVQMQIQMQISTIKVAGCMQKSADVLKSLNALVKIPELSHVCQEMAREMEKAGLVEELVSDAM 149
            FGFGKK++P+EEAKK KR+IGRE+R                  EI+KLAK+G++RRGALTILAKDLVRSRKTREKMVGGKAML SVQMQIQMQ+STIKVAGCMQKSADVLK+LNALVKIPELS VCQEMAREME+AGLVEE+V DAM
Sbjct:   63 FGFGKKVEPMEEAKKLKRSIGREIRSVDRTLIHIEREERKIVKEIQKLAKQGETRRGALTILAKDLVRSRKTREKMVGGKAMLASVQMQIQMQMSTIKVAGCMQKSADVLKTLNALVKIPELSKVCQEMAREMERAGLVEEMVGDAM 209          
BLAST of NO20G01190 vs. NCBI_GenBank
Match: CBJ27710.1 (similar to vacuolar protein sorting 24 homolog [Ectocarpus siliculosus])

HSP 1 Score: 118.6 bits (296), Expect = 2.400e-23
Identity = 65/143 (45.45%), Postives = 92/143 (64.34%), Query Frame = 0
Query:    6 KKLDPVEEAKKWKRNIGREVRXXXXXXXXXXXXXXXXXXEIKKLAKEGDSRRGALTILAKDLVRSRKTREKMVGGKAMLTSVQMQIQMQISTIKVAGCMQKSADVLKSLNALVKIPELSHVCQEMAREMEKAGLVEELVSDAM 149
            +K+DP E+AK+W+R+I  EVR                  +IK +AKEG     A+ +LAK+LV SR  + +M  GKA L SVQMQ+Q QI+ IKV G ++KS +++ S+  LVKIPEL     ++A EME+AGLVEE+V+D +
Sbjct:    7 RKVDPEEQAKEWRRSINHEVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVMSRNAKNRMHEGKAQLHSVQMQLQNQIALIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGL 149          
BLAST of NO20G01190 vs. NCBI_GenBank
Match: PRP72802.1 (SNF7 family protein [Planoprotostelium fungivorum])

HSP 1 Score: 117.1 bits (292), Expect = 7.100e-23
Identity = 65/148 (43.92%), Postives = 91/148 (61.49%), Query Frame = 0
Query:    1 MFGFGKKLDPVEEAKKWKRNIGREVRXXXXXXXXXXXXXXXXXXEIKKLAKEGDSRRGALTILAKDLVRSRKTREKMVGGKAMLTSVQMQIQMQISTIKVAGCMQKSADVLKSLNALVKIPELSHVCQEMAREMEKAGLVEELVSDAM 149
            MF FGK+  P E  KKW+R + +E R                   IK LAK+GD  + +  ILAK++VRSR  +EK+   KA L SV MQ+Q  +S +K+AG M KSA ++ S+N L+K+P+L      M REMEKAGL+EE+++DA+
Sbjct:   75 MFLFGKRPSPEELVKKWRRELTKEQRLLDRQIRAIDLAEQKTIRSIKDLAKKGD--KSSAKILAKEIVRSRAAKEKIYKSKAQLNSVGMQLQQNLSMMKLAGVMSKSATIMTSMNDLIKLPQLHQTMMVMGREMEKAGLIEEMMTDAL 220          
BLAST of NO20G01190 vs. NCBI_GenBank
Match: XP_016605210.1 (hypothetical protein SPPG_07557 [Spizellomyces punctatus DAOM BR117] >KNC97170.1 hypothetical protein SPPG_07557 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 107.8 bits (268), Expect = 4.300e-20
Identity = 55/144 (38.19%), Postives = 90/144 (62.50%), Query Frame = 0
Query:    5 GKKLDPVEEAKKWKRNIGREVRXXXXXXXXXXXXXXXXXXEIKKLAKEGDSRRGALTILAKDLVRSRKTREKMVGGKAMLTSVQMQIQMQISTIKVAGCMQKSADVLKSLNALVKIPELSHVCQEMAREMEKAGLVEELVSDAM 149
            GK+L P E+ KKW++ +  + R                   +K+ AK  D+   +  +LAK++VRSRK R+++   KA L S+ M +Q Q++T+K++G +QKS DV+K +N LVK+PE+S +  EM  EM KAG++EE++ D++
Sbjct:   10 GKRLSPEEQVKKWRQTVRAQERELEKSMRGIDAEEAKVKRALKQAAKRNDTT--SCKLLAKEIVRSRKARDRLYTSKAQLNSLTMHMQQQLATMKISGTLQKSTDVMKLVNNLVKLPEISSIMSEMGAEMMKAGIIEEMMQDSI 151          
BLAST of NO20G01190 vs. NCBI_GenBank
Match: CEG80669.1 (Putative Vacuolar protein-sorting-associated protein [Rhizopus microsporus])

HSP 1 Score: 105.9 bits (263), Expect = 1.600e-19
Identity = 61/145 (42.07%), Postives = 91/145 (62.76%), Query Frame = 0
Query:    4 FGKKLDPVEEAKKWKRNIGREVRXXXXXXXXXXXXXXXXXXEIKKLAKEGDSRRGALTILAKDLVRSRKTREKMVGGKAMLTSVQMQIQMQISTIKVAGCMQKSADVLKSLNALVKIPELSHVCQEMAREMEKAGLVEELVSDAM 149
            FGKK  P E  KKW++ I  + R                   IK++AK+GD +     +LAK+L+RS++ + ++   KA L S+ MQ++ Q++TIKVAG +QKS +V+K +N LVK+PELS   Q+M+ EM KAGL+EE++ D M
Sbjct:    9 FGKK-TPDELVKKWRQEIRAQQRSIQKQITAIDNEEAKVKRSIKQVAKKGDVKN--CKMLAKELIRSQRHKNRLYTSKAQLNSIIMQLEHQLATIKVAGSLQKSGEVMKLVNQLVKLPELSQSMQQMSMEMTKAGLMEEMIGDTM 150          
BLAST of NO20G01190 vs. NCBI_GenBank
Match: CEG71719.1 (hypothetical protein RMATCC62417_07405 [Rhizopus microsporus])

HSP 1 Score: 105.9 bits (263), Expect = 1.600e-19
Identity = 61/145 (42.07%), Postives = 91/145 (62.76%), Query Frame = 0
Query:    4 FGKKLDPVEEAKKWKRNIGREVRXXXXXXXXXXXXXXXXXXEIKKLAKEGDSRRGALTILAKDLVRSRKTREKMVGGKAMLTSVQMQIQMQISTIKVAGCMQKSADVLKSLNALVKIPELSHVCQEMAREMEKAGLVEELVSDAM 149
            FGKK  P E  KKW++ I  + R                   IK++AK+GD +     +LAK+L+RS++ + ++   KA L S+ MQ++ Q++TIKVAG +QKS +V+K +N LVK+PELS   Q+M+ EM KAGL+EE++ D M
Sbjct:    9 FGKK-TPDELVKKWRQEIRAQQRSIQKQITAIDNEEAKVKRSIKQVAKKGDVKN--CKMLAKELIRSQRHKNRLYTSKAQLNSIIMQLEHQLATIKVAGSLQKSGEVMKLVNQLVKLPELSQSMQQMSMEMTKAGLMEEMIGDTM 150          
BLAST of NO20G01190 vs. NCBI_GenBank
Match: CEI97251.1 (hypothetical protein RMCBS344292_11387 [Rhizopus microsporus])

HSP 1 Score: 105.9 bits (263), Expect = 1.600e-19
Identity = 61/145 (42.07%), Postives = 91/145 (62.76%), Query Frame = 0
Query:    4 FGKKLDPVEEAKKWKRNIGREVRXXXXXXXXXXXXXXXXXXEIKKLAKEGDSRRGALTILAKDLVRSRKTREKMVGGKAMLTSVQMQIQMQISTIKVAGCMQKSADVLKSLNALVKIPELSHVCQEMAREMEKAGLVEELVSDAM 149
            FGKK  P E  KKW++ I  + R                   IK++AK+GD +     +LAK+L+RS++ + ++   KA L S+ MQ++ Q++TIKVAG +QKS +V+K +N LVK+PELS   Q+M+ EM KAGL+EE++ D M
Sbjct:    9 FGKK-TPDELVKKWRQEIRAQQRSIQKQITAIDNEEAKVKRSIKQVAKKGDVKN--CKMLAKELIRSQRHKNRLYTSKAQLNSIIMQLEHQLATIKVAGSLQKSGEVMKLVNQLVKLPELSQSMQQMSMEMTKAGLMEEMIGDTM 150          
BLAST of NO20G01190 vs. NCBI_GenBank
Match: XP_023462623.1 (hypothetical protein RHIMIDRAFT_219124, partial [Rhizopus microsporus ATCC 52813] >ORE03510.1 hypothetical protein BCV72DRAFT_279178, partial [Rhizopus microsporus var. microsporus] >PHZ08915.1 hypothetical protein RHIMIDRAFT_219124, partial [Rhizopus microsporus ATCC 52813])

HSP 1 Score: 105.9 bits (263), Expect = 1.600e-19
Identity = 61/145 (42.07%), Postives = 91/145 (62.76%), Query Frame = 0
Query:    4 FGKKLDPVEEAKKWKRNIGREVRXXXXXXXXXXXXXXXXXXEIKKLAKEGDSRRGALTILAKDLVRSRKTREKMVGGKAMLTSVQMQIQMQISTIKVAGCMQKSADVLKSLNALVKIPELSHVCQEMAREMEKAGLVEELVSDAM 149
            FGKK  P E  KKW++ I  + R                   IK++AK+GD +     +LAK+L+RS++ + ++   KA L S+ MQ++ Q++TIKVAG +QKS +V+K +N LVK+PELS   Q+M+ EM KAGL+EE++ D M
Sbjct:    9 FGKK-TPDELVKKWRQEIRAQQRSIQKQITAIDNEEAKVKRSIKQVAKKGDVKN--CKMLAKELIRSQRHKNRLYTSKAQLNSIIMQLEHQLATIKVAGSLQKSGEVMKLVNQLVKLPELSQSMQQMSMEMTKAGLMEEMIGDTM 150          
BLAST of NO20G01190 vs. NCBI_GenBank
Match: ORE13520.1 (Snf7-domain-containing protein [Rhizopus microsporus])

HSP 1 Score: 105.9 bits (263), Expect = 1.600e-19
Identity = 61/145 (42.07%), Postives = 91/145 (62.76%), Query Frame = 0
Query:    4 FGKKLDPVEEAKKWKRNIGREVRXXXXXXXXXXXXXXXXXXEIKKLAKEGDSRRGALTILAKDLVRSRKTREKMVGGKAMLTSVQMQIQMQISTIKVAGCMQKSADVLKSLNALVKIPELSHVCQEMAREMEKAGLVEELVSDAM 149
            FGKK  P E  KKW++ I  + R                   IK++AK+GD +     +LAK+L+RS++ + ++   KA L S+ MQ++ Q++TIKVAG +QKS +V+K +N LVK+PELS   Q+M+ EM KAGL+EE++ D M
Sbjct:    9 FGKK-TPDELVKKWRQEIRAQQRSIQKQITAIDNEEAKVKRSIKQVAKKGDVKN--CKMLAKELIRSQRHKNRLYTSKAQLNSIIMQLEHQLATIKVAGSLQKSGEVMKLVNQLVKLPELSQSMQQMSMEMTKAGLMEEMIGDTM 150          
BLAST of NO20G01190 vs. NCBI_GenBank
Match: ORY97424.1 (Snf7-domain-containing protein [Syncephalastrum racemosum])

HSP 1 Score: 105.5 bits (262), Expect = 2.100e-19
Identity = 58/145 (40.00%), Postives = 91/145 (62.76%), Query Frame = 0
Query:    4 FGKKLDPVEEAKKWKRNIGREVRXXXXXXXXXXXXXXXXXXEIKKLAKEGDSRRGALTILAKDLVRSRKTREKMVGGKAMLTSVQMQIQMQISTIKVAGCMQKSADVLKSLNALVKIPELSHVCQEMAREMEKAGLVEELVSDAM 149
            FGKK  P E  KKW++ I  + R                   IK++AK GD++     +LAK+L+RS+K + ++   KA L S+ MQ++ Q++TIK+AG +QKS +V+  +N LV++PE+S   Q+M+ EM KAGL++E++SD M
Sbjct:   12 FGKK-TPEELVKKWRQEIRGQQRQIQRQIQAIDIEEAKVKKSIKQVAKRGDTK--ICKMLAKELIRSQKHKNRLYTSKAQLNSIVMQLEQQLATIKIAGTLQKSGEVMSLVNRLVRLPEISQTMQQMSMEMTKAGLMDEMISDTM 153          
The following BLAST results are available for this feature:
BLAST of NO20G01190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22136.11.100e-5076.19snf7 family protein [Nannochloropsis gaditana][more]
CBJ27710.12.400e-2345.45similar to vacuolar protein sorting 24 homolog [Ec... [more]
PRP72802.17.100e-2343.92SNF7 family protein [Planoprotostelium fungivorum][more]
XP_016605210.14.300e-2038.19hypothetical protein SPPG_07557 [Spizellomyces pun... [more]
CEG80669.11.600e-1942.07Putative Vacuolar protein-sorting-associated prote... [more]
CEG71719.11.600e-1942.07hypothetical protein RMATCC62417_07405 [Rhizopus m... [more]
CEI97251.11.600e-1942.07hypothetical protein RMCBS344292_11387 [Rhizopus m... [more]
XP_023462623.11.600e-1942.07hypothetical protein RHIMIDRAFT_219124, partial [R... [more]
ORE13520.11.600e-1942.07Snf7-domain-containing protein [Rhizopus microspor... [more]
ORY97424.12.100e-1940.00Snf7-domain-containing protein [Syncephalastrum ra... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002647NSK002647Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01190.1NO20G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594622gene_6332Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01190.1NO20G01190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01190 ID=NO20G01190|Name=NO20G01190|organism=Nannochloropsis oceanica|type=gene|length=2090bp
ATGGGGAGTGTATACTTTCTGCCTAGTTGTGTCGGTGGGTGGGGAGAACG
GGGATGTGTGAGTAAGAAAAGAAGGATGCAAGCAACACCGGAATGGGCCT
CCATGACGGCGGCCGCACAACAGTAGACTGATGGGGTGCCTCCGCGTTTG
CGAATCACGAAAATCTGAGGCGGTTGAGTGAGACAGAGAGTGAGTGGCTG
TGTGCGGCATGGGGCCGTGGGGATAGATGTGGCAAGCCGGTCCCTGGCCC
TGCGAGCGTGCTGCGAAGGTTTTGGCGAGAGGCAGGATGATGCCTGTGTT
TGTGTGTGTACAGTGCTTGCCGTCGACATGGCCAACCAAGGCAAGGCATG
GAGTATGGATTTGGCATAGCAGTGTGCAGAGCTAGTGTTGTAAGCCTGTA
TTTGACGTGAAGGAGCGGGAATGCGGACGAAGGCATGTTCGGTTTTGATC
AGACGGCGAAACGTGGGTGCATCACTCTTGCGTGCGTGCTCTGGACCGCG
GGACAACCCCTGTCTGCGGGCTTGTATCTTTACAAGAGATCAGCTTGAAT
CCAGGGCATCAAGAGACTGTTCGTGCTGGATGCATGGAGGCGTAACACAA
TTCAAACGGGACTAGAAAGGGGGGCGTACTGGCTGCCGCCGTTTCTTCAA
AATTAAAAATGTGTGATAAAAGAAGCATGAAAGGTGTCCATCATTTCGGG
CGCATCTGCACGTCTGCCTCTCTGAGCAATGTCCCTGGCCCCTTCCCTCA
CGCACACACCTGTCTTCGCATACACACAGGTGCGTCTCGAAATTGTCAAG
CCGCAGAAATCGGGTCAAGTCAGCCAGGAGTCAAGGTAGCAAACTCTCCA
TACCATCCAAAGCGTGCTTCGACCCACCCAGATCGACCCCCTTGTACCCT
TGCGCTTCGCGCTCTCCCCTCGCCAGCAGGATGTTTGGATTTGGCAAGAA
GCTTGATCCTGTGGAGGAGGCCAAGAAGgtacgtgcaacatgaatgtgta
gtttgagtaagtgcatttcgagcgcttgccttcacccctctgcccgttat
cctaactggaaggcacatgatgagctgacctcgtcaatccgatgcatgca
attattgacaatcgattaaacccttataagacctcaaccgcatttgcagc
tgctgcatcagttcctcccaccatctctccctcattccctctctctcccc
cccatattcaccccagTGGAAACGCAACATCGGCCGCGAAGTCCGCAGTA
TTGATCGCACACTCCAAGACATTGAGAGGGCCGAACAAAAAATTGTAAAT
GAAATCAAAAAGCTCGCCAAGGAAGGCGATTCACGCCGCGGTGCTCTCAC
CATCCTTGCCAAGGgtaagtcagtgtctggttgtccaccctctctcttct
ctccttccaattttcattttcccgccctccctccctctttcccccctagA
TTTGGTCCGTTCCCGCAAAACGAGGGAGAAAATGGTGGGTGGCAAGGCCA
TGCTTACCTCCGTACAAATGCAGATTCAGATGCAAATTTCTACTATAAAA
GTGGCAGGCTGCATGCAGAAATCAGCTGATGTCCTCAAGAGCCTTAACGC
CCTCGTCAAAATCCCCGAGCTCAGTCATGTCTGCCAGGAAATGGCGCGCG
AGATGGAAAAAGCCGGTCTGGTGGAAGAACTCGTCTCCGATGCCATGGAC
AGCGTGGACACCACAGACGAAGACGAGGTTGACCTGGAGGTTCAGAAGGT
CCTCGACGAGCTAACCCTCCACACCATAAGCACTGCCCCTCAAGAGCCCA
CCAAGGCAGCAGTGCCCGCACAAAAGGAGGGCGAGGAGGAGGGAGAAGAG
GCTGAGACAACGGCAGAAGAGGAGGAGAGGGAGGCGTTGGAATTGAAGCA
TATGAAGGAGCGGTTGAATGCCTTGTAAAATAAATAGTTGTAGGGTGTTA
ATGAAGGAGGAAGGGAAGGAGGGGTGGAATGGAAGGGGGTGTATTTGACC
GAAGAATGCAAAGAGACGAGGGGGGCAAAAAGAGATTGTAGTACAAACTG
AAAGGGGATAAAACGAGCAATGCAAACCTCTCCGTGGAGA
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protein sequence of NO20G01190.1

>NO20G01190.1-protein ID=NO20G01190.1-protein|Name=NO20G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MFGFGKKLDPVEEAKKWKRNIGREVRSIDRTLQDIERAEQKIVNEIKKLA
KEGDSRRGALTILAKDLVRSRKTREKMVGGKAMLTSVQMQIQMQISTIKV
AGCMQKSADVLKSLNALVKIPELSHVCQEMAREMEKAGLVEELVSDAMDS
VDTTDEDEVDLEVQKVLDELTLHTISTAPQEPTKAAVPAQKEGEEEGEEA
ETTAEEEEREALELKHMKERLNAL*
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Synonyms
Publications