NO20G01190.1, NO20G01190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01190.1
Unique NameNO20G01190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1767
Alignment locationchr20:364555..366644 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:364555..366644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01190.1 vs.
Match: EWM22136.1 (snf7 family protein [Nannochloropsis gaditana])

HSP 1 Score: 300.1 bits (767), Expect = 5.900e-78
Identity = 172/223 (77.13%), Postives = 194/223 (87.00%), Query Frame = 0 
Query:    2 FGFGKKLDPVEEAKKWKRNIGREVRSIDRTLQDIERAEQKIVNEIKKLAKEGDSRRGALTILAKDLVRSRKTREKMVGGKAMLTSVQMQIQMQISTIKVAGCMQKSADVLKSLNALVKIPELSHVCQEMAREMEKAGLVEELVSDAMDSVDTTDEDEVDLEVQKVLDELTLHTISTAPQEPTKAAVPAQKEGEEEGEEAETTAEEEEREALELKHMKERLNAL 225
            FGFGKK++P+EEAKK KR+IGRE+RS+DRTL  IER E+KIV EI+KLAK+G++RRGALTILAKDLVRSRKTREKMVGGKAML SVQMQIQMQ+STIKVAGCMQKSADVLK+LNALVKIPELS VCQEMAREME+AGLVEE+V DAMDSVD TDEDEVD+EVQKVL+EL  + +S AP EP KA    Q+ GE  GEEA     +EERE +ELK MKERLNAL
Sbjct:   63 FGFGKKVEPMEEAKKLKRSIGREIRSVDRTLIHIEREERKIVKEIQKLAKQGETRRGALTILAKDLVRSRKTREKMVGGKAMLASVQMQIQMQMSTIKVAGCMQKSADVLKTLNALVKIPELSKVCQEMAREMERAGLVEEMVGDAMDSVDVTDEDEVDMEVQKVLEELAFNMMSDAPVEPMKA---VQEAGEAVGEEA---GMDEEREEMELKKMKERLNAL 279
The following BLAST results are available for this feature:
BLAST of NO20G01190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22136.15.900e-7877.13snf7 family protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01190NO20G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01190.1NO20G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01190.1.cds1NO20G01190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01190.1.cds2NO20G01190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01190.1.cds3NO20G01190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01190.1 ID=NO20G01190.1|Name=NO20G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1767bp
ATGGGGAGTGTATACTTTCTGCCTAGTTGTGTCGGTGGGTGGGGAGAACG
GGGATGTGTGAGTAAGAAAAGAAGGATGCAAGCAACACCGGAATGGGCCT
CCATGACGGCGGCCGCACAACAGTAGACTGATGGGGTGCCTCCGCGTTTG
CGAATCACGAAAATCTGAGGCGGTTGAGTGAGACAGAGAGTGAGTGGCTG
TGTGCGGCATGGGGCCGTGGGGATAGATGTGGCAAGCCGGTCCCTGGCCC
TGCGAGCGTGCTGCGAAGGTTTTGGCGAGAGGCAGGATGATGCCTGTGTT
TGTGTGTGTACAGTGCTTGCCGTCGACATGGCCAACCAAGGCAAGGCATG
GAGTATGGATTTGGCATAGCAGTGTGCAGAGCTAGTGTTGTAAGCCTGTA
TTTGACGTGAAGGAGCGGGAATGCGGACGAAGGCATGTTCGGTTTTGATC
AGACGGCGAAACGTGGGTGCATCACTCTTGCGTGCGTGCTCTGGACCGCG
GGACAACCCCTGTCTGCGGGCTTGTATCTTTACAAGAGATCAGCTTGAAT
CCAGGGCATCAAGAGACTGTTCGTGCTGGATGCATGGAGGCGTAACACAA
TTCAAACGGGACTAGAAAGGGGGGCGTACTGGCTGCCGCCGTTTCTTCAA
AATTAAAAATGTGTGATAAAAGAAGCATGAAAGGTGTCCATCATTTCGGG
CGCATCTGCACGTCTGCCTCTCTGAGCAATGTCCCTGGCCCCTTCCCTCA
CGCACACACCTGTCTTCGCATACACACAGGTGCGTCTCGAAATTGTCAAG
CCGCAGAAATCGGGTCAAGTCAGCCAGGAGTCAAGGTAGCAAACTCTCCA
TACCATCCAAAGCGTGCTTCGACCCACCCAGATCGACCCCCTTGTACCCT
TGCGCTTCGCGCTCTCCCCTCGCCAGCAGGATGTTTGGATTTGGCAAGAA
GCTTGATCCTGTGGAGGAGGCCAAGAAGTGGAAACGCAACATCGGCCGCG
AAGTCCGCAGTATTGATCGCACACTCCAAGACATTGAGAGGGCCGAACAA
AAAATTGTAAATGAAATCAAAAAGCTCGCCAAGGAAGGCGATTCACGCCG
CGGTGCTCTCACCATCCTTGCCAAGGATTTGGTCCGTTCCCGCAAAACGA
GGGAGAAAATGGTGGGTGGCAAGGCCATGCTTACCTCCGTACAAATGCAG
ATTCAGATGCAAATTTCTACTATAAAAGTGGCAGGCTGCATGCAGAAATC
AGCTGATGTCCTCAAGAGCCTTAACGCCCTCGTCAAAATCCCCGAGCTCA
GTCATGTCTGCCAGGAAATGGCGCGCGAGATGGAAAAAGCCGGTCTGGTG
GAAGAACTCGTCTCCGATGCCATGGACAGCGTGGACACCACAGACGAAGA
CGAGGTTGACCTGGAGGTTCAGAAGGTCCTCGACGAGCTAACCCTCCACA
CCATAAGCACTGCCCCTCAAGAGCCCACCAAGGCAGCAGTGCCCGCACAA
AAGGAGGGCGAGGAGGAGGGAGAAGAGGCTGAGACAACGGCAGAAGAGGA
GGAGAGGGAGGCGTTGGAATTGAAGCATATGAAGGAGCGGTTGAATGCCT
TGTAAAATAAATAGTTGTAGGGTGTTAATGAAGGAGGAAGGGAAGGAGGG
GTGGAATGGAAGGGGGTGTATTTGACCGAAGAATGCAAAGAGACGAGGGG
GGCAAAAAGAGATTGTAGTACAAACTGAAAGGGGATAAAACGAGCAATGC
AAACCTCTCCGTGGAGA
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protein sequence of NO20G01190.1

>NO20G01190.1-protein ID=NO20G01190.1-protein|Name=NO20G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MFGFGKKLDPVEEAKKWKRNIGREVRSIDRTLQDIERAEQKIVNEIKKLA
KEGDSRRGALTILAKDLVRSRKTREKMVGGKAMLTSVQMQIQMQISTIKV
AGCMQKSADVLKSLNALVKIPELSHVCQEMAREMEKAGLVEELVSDAMDS
VDTTDEDEVDLEVQKVLDELTLHTISTAPQEPTKAAVPAQKEGEEEGEEA
ETTAEEEEREALELKHMKERLNAL*
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mRNA from alignment at chr20:364555..366644+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01190.1 ID=NO20G01190.1|Name=NO20G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2090bp|location=Sequence derived from alignment at chr20:364555..366644+ (Nannochloropsis oceanica)
ATGGGGAGTGTATACTTTCTGCCTAGTTGTGTCGGTGGGTGGGGAGAACG
GGGATGTGTGAGTAAGAAAAGAAGGATGCAAGCAACACCGGAATGGGCCT
CCATGACGGCGGCCGCACAACAGTAGACTGATGGGGTGCCTCCGCGTTTG
CGAATCACGAAAATCTGAGGCGGTTGAGTGAGACAGAGAGTGAGTGGCTG
TGTGCGGCATGGGGCCGTGGGGATAGATGTGGCAAGCCGGTCCCTGGCCC
TGCGAGCGTGCTGCGAAGGTTTTGGCGAGAGGCAGGATGATGCCTGTGTT
TGTGTGTGTACAGTGCTTGCCGTCGACATGGCCAACCAAGGCAAGGCATG
GAGTATGGATTTGGCATAGCAGTGTGCAGAGCTAGTGTTGTAAGCCTGTA
TTTGACGTGAAGGAGCGGGAATGCGGACGAAGGCATGTTCGGTTTTGATC
AGACGGCGAAACGTGGGTGCATCACTCTTGCGTGCGTGCTCTGGACCGCG
GGACAACCCCTGTCTGCGGGCTTGTATCTTTACAAGAGATCAGCTTGAAT
CCAGGGCATCAAGAGACTGTTCGTGCTGGATGCATGGAGGCGTAACACAA
TTCAAACGGGACTAGAAAGGGGGGCGTACTGGCTGCCGCCGTTTCTTCAA
AATTAAAAATGTGTGATAAAAGAAGCATGAAAGGTGTCCATCATTTCGGG
CGCATCTGCACGTCTGCCTCTCTGAGCAATGTCCCTGGCCCCTTCCCTCA
CGCACACACCTGTCTTCGCATACACACAGGTGCGTCTCGAAATTGTCAAG
CCGCAGAAATCGGGTCAAGTCAGCCAGGAGTCAAGGTAGCAAACTCTCCA
TACCATCCAAAGCGTGCTTCGACCCACCCAGATCGACCCCCTTGTACCCT
TGCGCTTCGCGCTCTCCCCTCGCCAGCAGGATGTTTGGATTTGGCAAGAA
GCTTGATCCTGTGGAGGAGGCCAAGAAGGTACGTGCAACATGAATGTGTA
GTTTGAGTAAGTGCATTTCGAGCGCTTGCCTTCACCCCTCTGCCCGTTAT
CCTAACTGGAAGGCACATGATGAGCTGACCTCGTCAATCCGATGCATGCA
ATTATTGACAATCGATTAAACCCTTATAAGACCTCAACCGCATTTGCAGC
TGCTGCATCAGTTCCTCCCACCATCTCTCCCTCATTCCCTCTCTCTCCCC
CCCATATTCACCCCAGTGGAAACGCAACATCGGCCGCGAAGTCCGCAGTA
TTGATCGCACACTCCAAGACATTGAGAGGGCCGAACAAAAAATTGTAAAT
GAAATCAAAAAGCTCGCCAAGGAAGGCGATTCACGCCGCGGTGCTCTCAC
CATCCTTGCCAAGGGTAAGTCAGTGTCTGGTTGTCCACCCTCTCTCTTCT
CTCCTTCCAATTTTCATTTTCCCGCCCTCCCTCCCTCTTTCCCCCCTAGA
TTTGGTCCGTTCCCGCAAAACGAGGGAGAAAATGGTGGGTGGCAAGGCCA
TGCTTACCTCCGTACAAATGCAGATTCAGATGCAAATTTCTACTATAAAA
GTGGCAGGCTGCATGCAGAAATCAGCTGATGTCCTCAAGAGCCTTAACGC
CCTCGTCAAAATCCCCGAGCTCAGTCATGTCTGCCAGGAAATGGCGCGCG
AGATGGAAAAAGCCGGTCTGGTGGAAGAACTCGTCTCCGATGCCATGGAC
AGCGTGGACACCACAGACGAAGACGAGGTTGACCTGGAGGTTCAGAAGGT
CCTCGACGAGCTAACCCTCCACACCATAAGCACTGCCCCTCAAGAGCCCA
CCAAGGCAGCAGTGCCCGCACAAAAGGAGGGCGAGGAGGAGGGAGAAGAG
GCTGAGACAACGGCAGAAGAGGAGGAGAGGGAGGCGTTGGAATTGAAGCA
TATGAAGGAGCGGTTGAATGCCTTGTAAAATAAATAGTTGTAGGGTGTTA
ATGAAGGAGGAAGGGAAGGAGGGGTGGAATGGAAGGGGGTGTATTTGACC
GAAGAATGCAAAGAGACGAGGGGGGCAAAAAGAGATTGTAGTACAAACTG
AAAGGGGATAAAACGAGCAATGCAAACCTCTCCGTGGAGA
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Coding sequence (CDS) from alignment at chr20:364555..366644+

>NO20G01190.1 ID=NO20G01190.1|Name=NO20G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at chr20:364555..366644+ (Nannochloropsis oceanica)
ATGTTTGGATTTGGCAAGAAGCTTGATCCTGTGGAGGAGGCCAAGAAGTG
GAAACGCAACATCGGCCGCGAAGTCCGCAGTATTGATCGCACACTCCAAG
ACATTGAGAGGGCCGAACAAAAAATTGTAAATGAAATCAAAAAGCTCGCC
AAGGAAGGCGATTCACGCCGCGGTGCTCTCACCATCCTTGCCAAGGATTT
GGTCCGTTCCCGCAAAACGAGGGAGAAAATGGTGGGTGGCAAGGCCATGC
TTACCTCCGTACAAATGCAGATTCAGATGCAAATTTCTACTATAAAAGTG
GCAGGCTGCATGCAGAAATCAGCTGATGTCCTCAAGAGCCTTAACGCCCT
CGTCAAAATCCCCGAGCTCAGTCATGTCTGCCAGGAAATGGCGCGCGAGA
TGGAAAAAGCCGGTCTGGTGGAAGAACTCGTCTCCGATGCCATGGACAGC
GTGGACACCACAGACGAAGACGAGGTTGACCTGGAGGTTCAGAAGGTCCT
CGACGAGCTAACCCTCCACACCATAAGCACTGCCCCTCAAGAGCCCACCA
AGGCAGCAGTGCCCGCACAAAAGGAGGGCGAGGAGGAGGGAGAAGAGGCT
GAGACAACGGCAGAAGAGGAGGAGAGGGAGGCGTTGGAATTGAAGCATAT
GAAGGAGCGGTTGAATGCCTTGTAA
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Synonyms
Publications