NO20G01160, NO20G01160 (gene) Nannochloropsis oceanica

Overview
NameNO20G01160
Unique NameNO20G01160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1315
Alignment locationchr20:359595..360909 -

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Properties
Property NameValue
DescriptionDna-directed rna polymerase ii kDa polypeptide
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:359595..360909 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0016740transferase activity
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR001529DNA-dir_RNA_pol_M/15kDasu
Homology
[Close]
BLAST of NO20G01160 vs. NCBI_GenBank
Match: EWM22135.1 (dna-directed rna polymerase ii kda polypeptide [Nannochloropsis gaditana])

HSP 1 Score: 245.0 bits (624), Expect = 1.200e-61
Identity = 109/116 (93.97%), Postives = 113/116 (97.41%), Query Frame = 0 
Query:    1 MKFCPNCNFILYPKEDKDDRKLIYYCRSQRCDHEEDAPDPYVFRNQVIKTRTVNLDHVLSAVANDPTLQRSTVDCPKCHHHEAVLIQSTQNVKSNKLTLIFVCCNPNCGNKWTDDD 117
            MKFCPNCNFILYPKEDKD+RKL+YYCRS RCDHEEDAPDPYVFRNQVIKTRTVNLDHVLSAVANDPTLQRST DCP CH+HEAVLIQSTQNVKSNKLTLIFVCCNPNCG+KWTDDD
Sbjct:   55 MKFCPNCNFILYPKEDKDERKLVYYCRSPRCDHEEDAPDPYVFRNQVIKTRTVNLDHVLSAVANDPTLQRSTADCPLCHYHEAVLIQSTQNVKSNKLTLIFVCCNPNCGHKWTDDD 170
[Close]
BLAST of NO20G01160 vs. NCBI_GenBank
Match: PTQ33640.1 (hypothetical protein MARPO_0087s0071 [Marchantia polymorpha] >PTQ33641.1 hypothetical protein MARPO_0087s0071 [Marchantia polymorpha])

HSP 1 Score: 122.5 bits (306), Expect = 9.000e-25
Identity = 60/116 (51.72%), Postives = 76/116 (65.52%), Query Frame = 0 
Query:    1 MKFCPNCNFILYPKEDKDDRKLIYYCRSQRCDHEEDAPDPYVFRNQVIKTRTVNLDHVLSAVANDPTLQRS-TVDCPKCHHHEAVLIQSTQNVKSNKLTLIFVCCNPNCGNKWTDD 116
            MKFCP CN ILYP+ED + + L+Y CR+  C+HEE A    V+R QV    T+     L  VA+DPTL R+ +V CP C H EAV  Q   N +++ +TL FVCCNPNCG+KW DD
Sbjct:    4 MKFCPECNNILYPREDIERKILLYACRN--CEHEEKATHNCVYR-QVYSHGTMERSQYLQEVASDPTLPRTKSVRCPSCDHGEAVFFQLNSNSRNDGMTLYFVCCNPNCGHKWRDD 116
[Close]
BLAST of NO20G01160 vs. NCBI_GenBank
Match: XP_012084056.1 (DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas])

HSP 1 Score: 117.5 bits (293), Expect = 2.900e-23
Identity = 59/114 (51.75%), Postives = 76/114 (66.67%), Query Frame = 0 
Query:    2 KFCPNCNFILYPKEDKDDRKLIYYCRSQRCDHEEDAPDPYVFRNQVIKTRTVNLDHVLSAVANDPTLQRS-TVDCPKCHHHEAVLIQSTQNVKSNKLTLIFVCCNPNCGNKWTD 115
            KFCP+CN ILYPKEDK  R L+Y CR+  CDH+E A +  V+RN+V  + T     +L  VA+DPTL R+ +V C  C H EAV +Q+T   +    TL +VCCNPNCGN+W D
Sbjct:    5 KFCPDCNNILYPKEDKKQRILLYACRN--CDHQEVADNNRVYRNEVQHSVT-EFTQILQDVASDPTLPRTKSVRCSACGHGEAVFLQATS--REEGFTLFYVCCNPNCGNRWRD 113
[Close]
BLAST of NO20G01160 vs. NCBI_GenBank
Match: XP_021594898.1 (DNA-directed RNA polymerases II, IV and V subunit 9A [Manihot esculenta] >OAY27664.1 hypothetical protein MANES_15G005400 [Manihot esculenta])

HSP 1 Score: 115.9 bits (289), Expect = 8.400e-23
Identity = 59/115 (51.30%), Postives = 75/115 (65.22%), Query Frame = 0 
Query:    1 MKFCPNCNFILYPKEDKDDRKLIYYCRSQRCDHEEDAPDPYVFRNQVIKTRTVNLDHVLSAVANDPTLQRS-TVDCPKCHHHEAVLIQSTQNVKSNKLTLIFVCCNPNCGNKWTD 115
            MKFC  CN ILYPKEDK+ + L+Y CR+  CDH+E A +  V+RN+V  +       VL  VA DPTL R+ +V C  C+H EAV  Q+T   +   +TL FVCCNPNCGN+W D
Sbjct:    4 MKFCRECNNILYPKEDKEQKILLYACRN--CDHQEIAENNCVYRNEVHHS-VAERTQVLQDVAADPTLPRTKSVKCSMCNHQEAVFFQATARGEEG-MTLFFVCCNPNCGNRWRD 114
[Close]
BLAST of NO20G01160 vs. NCBI_GenBank
Match: NP_188323.1 (RNA polymerases M/15 Kd subunit [Arabidopsis thaliana] >Q6NLH0.1 RecName: Full=DNA-directed RNA polymerases II, IV and V subunit 9A >AAS76204.1 At3g16980 [Arabidopsis thaliana] >AAS88753.1 At3g16980 [Arabidopsis thaliana] >AEE75891.1 RNA polymerases M/15 Kd subunit [Arabidopsis thaliana] >OAP06560.1 NRPE9A [Arabidopsis thaliana])

HSP 1 Score: 115.5 bits (288), Expect = 1.100e-22
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 0 
Query:    1 MKFCPNCNFILYPKEDKDDRKLIYYCRSQRCDHEEDAPDPYVFRNQV---IKTRTVNLDHVLSAVANDPTLQRS-TVDCPKCHHHEAVLIQSTQNVKSNKLTLIFVCCNPNCGNKWTD 115
            MKFC  CN ILYPKEDK+ + L+Y CR+  CDH+E A +  V+RN+V   +  RT     +L+ VA+DPTL R+  V C KC H EAV  Q+T   +   +TL FVCCNPNCG++W +
Sbjct:    4 MKFCRECNNILYPKEDKEQKILLYACRN--CDHQEVADNSCVYRNEVHHSVSERT----QILTDVASDPTLPRTKAVRCSKCQHREAVFFQATARGEEG-MTLFFVCCNPNCGHRWRE 114
[Close]
BLAST of NO20G01160 vs. NCBI_GenBank
Match: XP_006299525.1 (DNA-directed RNA polymerases II, IV and V subunit 9A [Capsella rubella] >EOA32423.1 hypothetical protein CARUB_v10015697mg [Capsella rubella])

HSP 1 Score: 115.5 bits (288), Expect = 1.100e-22
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 0 
Query:    1 MKFCPNCNFILYPKEDKDDRKLIYYCRSQRCDHEEDAPDPYVFRNQV---IKTRTVNLDHVLSAVANDPTLQRS-TVDCPKCHHHEAVLIQSTQNVKSNKLTLIFVCCNPNCGNKWTD 115
            MKFC  CN ILYPKEDK+ + L+Y CR+  CDH+E A +  V+RN+V   +  RT     +L+ VA+DPTL R+  V C KC H EAV  Q+T   +   +TL FVCCNPNCG++W +
Sbjct:    4 MKFCRECNNILYPKEDKEQKILLYACRN--CDHQEVADNSCVYRNEVHHSVSERT----QILTDVASDPTLPRTKAVRCAKCQHREAVFFQATARGEEG-MTLFFVCCNPNCGHRWRE 114
[Close]
BLAST of NO20G01160 vs. NCBI_GenBank
Match: XP_002883036.1 (DNA-directed RNA polymerases II, IV and V subunit 9A [Arabidopsis lyrata subsp. lyrata] >XP_010504868.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Camelina sativa] >XP_010465727.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Camelina sativa] >EFH59295.1 hypothetical protein ARALYDRAFT_318462 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 115.2 bits (287), Expect = 1.400e-22
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 0 
Query:    1 MKFCPNCNFILYPKEDKDDRKLIYYCRSQRCDHEEDAPDPYVFRNQV---IKTRTVNLDHVLSAVANDPTLQRS-TVDCPKCHHHEAVLIQSTQNVKSNKLTLIFVCCNPNCGNKWTD 115
            MKFC  CN ILYPKEDK+ + L+Y CR+  CDH+E A +  V+RN+V   +  RT     +L+ VA+DPTL R+  V C KC H EAV  Q+T   +   +TL FVCCNPNCG++W +
Sbjct:    4 MKFCRECNNILYPKEDKEQKILLYACRN--CDHQEVADNSCVYRNEVHHSVSERT----QILTDVASDPTLPRTKAVRCAKCQHSEAVFFQATARGEEG-MTLFFVCCNPNCGHRWRE 114
[Close]
BLAST of NO20G01160 vs. NCBI_GenBank
Match: XP_004487774.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cicer arietinum])

HSP 1 Score: 114.8 bits (286), Expect = 1.900e-22
Identity = 60/118 (50.85%), Postives = 77/118 (65.25%), Query Frame = 0 
Query:    1 MKFCPNCNFILYPKEDKDDRKLIYYCRSQRCDHEEDAPDPYVFRNQV---IKTRTVNLDHVLSAVANDPTLQRS-TVDCPKCHHHEAVLIQSTQNVKSNKLTLIFVCCNPNCGNKWTD 115
            MKFC  CN ILYPKED+D R L+Y CR+  CDH+E A +  V+RN++   +  RT     VL  VA DPTL R+  V C +C+H EAV  Q+T   +   +TL FVCCNPNCG++W D
Sbjct:    4 MKFCRECNNILYPKEDRDQRNLLYACRN--CDHQEVADNYCVYRNEIHHSVGERT----QVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEG-MTLFFVCCNPNCGHRWRD 114
[Close]
BLAST of NO20G01160 vs. NCBI_GenBank
Match: KFK39037.1 (hypothetical protein AALP_AA3G192700 [Arabis alpina])

HSP 1 Score: 114.8 bits (286), Expect = 1.900e-22
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 0 
Query:    1 MKFCPNCNFILYPKEDKDDRKLIYYCRSQRCDHEEDAPDPYVFRNQV---IKTRTVNLDHVLSAVANDPTLQRS-TVDCPKCHHHEAVLIQSTQNVKSNKLTLIFVCCNPNCGNKWTD 115
            MKFC  CN ILYPKEDK+ + L+Y CR+  CDH+E A +  V+RN+V   +  RT     +L+ VA+DPTL R+  V C KCHH EAV  Q+T   +   +TL FVCCN NCG++W +
Sbjct:    4 MKFCRECNNILYPKEDKEQKILLYACRN--CDHQEAADNNCVYRNEVHHSVSERT----QILTDVASDPTLPRTKAVRCAKCHHGEAVFFQATARGEEG-MTLFFVCCNQNCGHRWRE 114
[Close]
BLAST of NO20G01160 vs. NCBI_GenBank
Match: XP_002962042.1 (DNA-directed RNA polymerases II, IV and V subunit 9B [Selaginella moellendorffii] >XP_002971047.1 DNA-directed RNA polymerases II, IV and V subunit 9B [Selaginella moellendorffii] >EFJ27645.1 hypothetical protein SELMODRAFT_95006 [Selaginella moellendorffii] >EFJ37302.1 hypothetical protein SELMODRAFT_77443 [Selaginella moellendorffii])

HSP 1 Score: 114.4 bits (285), Expect = 2.400e-22
Identity = 59/115 (51.30%), Postives = 74/115 (64.35%), Query Frame = 0 
Query:    1 MKFCPNCNFILYPKEDKDDRKLIYYCRSQRCDHEEDAPDPYVFRNQVIKTRTVNLDHVLSAVANDPTLQRS-TVDCPKCHHHEAVLIQSTQNVKSNKLTLIFVCCNPNCGNKWTD 115
            MKFC  CN ILYPKED+D + L+Y CR+  CDH+E A +  V+RN+V  T       VL  VA+DPTL R+  V C +C H EAV  Q+T   +   +TL FVCCNPNCG +W D
Sbjct:    4 MKFCRECNNILYPKEDRDQKLLLYACRN--CDHQEAADNNCVYRNEVHHTAD-ERTQVLQDVASDPTLPRTKDVRCSRCKHGEAVFFQATARGEEG-MTLFFVCCNPNCGYRWRD 114
The following BLAST results are available for this feature:
BLAST of NO20G01160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22135.11.200e-6193.97dna-directed rna polymerase ii kda polypeptide [Na... [more]
PTQ33640.19.000e-2551.72hypothetical protein MARPO_0087s0071 [Marchantia p... [more]
XP_012084056.12.900e-2351.75DNA-directed RNA polymerases II, IV and V subunit ... [more]
XP_021594898.18.400e-2351.30DNA-directed RNA polymerases II, IV and V subunit ... [more]
NP_188323.11.100e-2250.00RNA polymerases M/15 Kd subunit [Arabidopsis thali... [more]
XP_006299525.11.100e-2250.00DNA-directed RNA polymerases II, IV and V subunit ... [more]
XP_002883036.11.400e-2250.00DNA-directed RNA polymerases II, IV and V subunit ... [more]
XP_004487774.11.900e-2250.85PREDICTED: DNA-directed RNA polymerases II, IV and... [more]
KFK39037.11.900e-2250.00hypothetical protein AALP_AA3G192700 [Arabis alpin... [more]
XP_002962042.12.400e-2251.30DNA-directed RNA polymerases II, IV and V subunit ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002645NSK002645Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01160.1NO20G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594611gene_6329Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100060g8gene8321Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01160.1NO20G01160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01160 ID=NO20G01160|Name=NO20G01160|organism=Nannochloropsis oceanica|type=gene|length=1315bp
AGGTCGTCCAATGTCTCGAACAACCGAACCAAAAACCTTGTGTGGCTTAG
TTCGTTAAAGAACTCATTCACAGCCATAGCATTGACCTTATCGAGGGTAA
CTGTAACATATTCTGGCGCCGTTGTGACGATGTGATGTGTGTGAGAGTTG
TTTGTGTCACATTGGATGAATGATGAAAAGCAATCCTTCGCTTGCACTTC
GCCCCCCCACCAACAACAAGCCGCCGCCCCAGACCTTCGGCTTCAGCTTG
CCTTGCCAAATTAATTCACACGCTCATGAACAGTCTTCTCCACAACTACC
CAAAAGAGTATCACAGGCGAGGAACGGAGTGTGCAGCGGCGGTGGCGGTA
TCTAGTGTGTGTCGCAGCGGCAGACAAAATGAAATTCTGCCCCAACTGgt
aaatttcgctgcatcatgcctcccccacctgctcctctctccctaccgcg
gcatcttactcacctacccatcctccttatatacaatctccgcgcttcct
cagCAACTTTATTCTGTACCCGAAGGAGGACAAGGACGACCGGAAGCTTA
TTTACTACTGTCGGTCCCAGCGGTGCGACCACGAGGAGGATGCCCCGGAC
CCGTACGTTTTCCGCAACCAAGTCATCAAGACCCGCACgtaagcattgtg
tgtctgtctatctagtgtctatgtgtgctgcgcaagcaatgtgtgtctgt
cctatattgtctatgtttgctagcctttggttacattgcgtgtgtctcac
tctcttatgttgcttctcggctattggcatcgtgcgtatgctgttttcgt
cttcgatatctcacggtagtcctctcattttcccctccctcgctcagAGT
TAATCTCGACCACGTTCTCTCCGCCGTGGCAAACGACCCAACTCTACAGC
GCTCTACCGTCGACTGCCCTAAGTGCCACCATCATGAAGCCGTTTTGATT
CAATCGACGCAGAATGTGAAGAGCAATAAATTGACACTTATCTTTGTGTG
TTGCAACCCGAATTGTGGGAATAAATGGACGGATGACGATGCACGGTGAT
GCAAAGGGAAGGATGGAAGGAGTAAGGGGAGGCTGGTGGGTGTATACAGG
CAACAGTGAAAGGGACGCAGATGGAGAGGAAGAGGGGAAGAGGGAGAATC
ATTTATCTTTCCTTTTCTTCTTTTGAGCGGATGGAGAAGGACGGAGACGA
GAAATACGTTATGAGTTTGTAAACTAAATCAAACGCAAAATCTTGAGCAG
GCATGAAGAAGACAGACCACCATCTGCTGTTGGCTGCTGCTGCTACTGCT
GCTGCAACCGTTGTT
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protein sequence of NO20G01160.1

>NO20G01160.1-protein ID=NO20G01160.1-protein|Name=NO20G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MKFCPNCNFILYPKEDKDDRKLIYYCRSQRCDHEEDAPDPYVFRNQVIKT
RTVNLDHVLSAVANDPTLQRSTVDCPKCHHHEAVLIQSTQNVKSNKLTLI
FVCCNPNCGNKWTDDDAR*
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Synonyms
Publications