NO20G01160.1, NO20G01160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01160.1
Unique NameNO20G01160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1001
Alignment locationchr20:359595..360909 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:359595..360909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01160.1 vs.
Match: EWM22135.1 (dna-directed rna polymerase ii kda polypeptide [Nannochloropsis gaditana])

HSP 1 Score: 245.0 bits (624), Expect = 1.200e-61
Identity = 109/116 (93.97%), Postives = 113/116 (97.41%), Query Frame = 0 
Query:    1 MKFCPNCNFILYPKEDKDDRKLIYYCRSQRCDHEEDAPDPYVFRNQVIKTRTVNLDHVLSAVANDPTLQRSTVDCPKCHHHEAVLIQSTQNVKSNKLTLIFVCCNPNCGNKWTDDD 117
            MKFCPNCNFILYPKEDKD+RKL+YYCRS RCDHEEDAPDPYVFRNQVIKTRTVNLDHVLSAVANDPTLQRST DCP CH+HEAVLIQSTQNVKSNKLTLIFVCCNPNCG+KWTDDD
Sbjct:   55 MKFCPNCNFILYPKEDKDERKLVYYCRSPRCDHEEDAPDPYVFRNQVIKTRTVNLDHVLSAVANDPTLQRSTADCPLCHYHEAVLIQSTQNVKSNKLTLIFVCCNPNCGHKWTDDD 170
The following BLAST results are available for this feature:
BLAST of NO20G01160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22135.11.200e-6193.97dna-directed rna polymerase ii kda polypeptide [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01160NO20G01160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01160.1NO20G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01160.1.cds1NO20G01160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01160.1.cds2NO20G01160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01160.1.cds3NO20G01160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01160.1 ID=NO20G01160.1|Name=NO20G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1001bp
AGGTCGTCCAATGTCTCGAACAACCGAACCAAAAACCTTGTGTGGCTTAG
TTCGTTAAAGAACTCATTCACAGCCATAGCATTGACCTTATCGAGGGTAA
CTGTAACATATTCTGGCGCCGTTGTGACGATGTGATGTGTGTGAGAGTTG
TTTGTGTCACATTGGATGAATGATGAAAAGCAATCCTTCGCTTGCACTTC
GCCCCCCCACCAACAACAAGCCGCCGCCCCAGACCTTCGGCTTCAGCTTG
CCTTGCCAAATTAATTCACACGCTCATGAACAGTCTTCTCCACAACTACC
CAAAAGAGTATCACAGGCGAGGAACGGAGTGTGCAGCGGCGGTGGCGGTA
TCTAGTGTGTGTCGCAGCGGCAGACAAAATGAAATTCTGCCCCAACTGCA
ACTTTATTCTGTACCCGAAGGAGGACAAGGACGACCGGAAGCTTATTTAC
TACTGTCGGTCCCAGCGGTGCGACCACGAGGAGGATGCCCCGGACCCGTA
CGTTTTCCGCAACCAAGTCATCAAGACCCGCACAGTTAATCTCGACCACG
TTCTCTCCGCCGTGGCAAACGACCCAACTCTACAGCGCTCTACCGTCGAC
TGCCCTAAGTGCCACCATCATGAAGCCGTTTTGATTCAATCGACGCAGAA
TGTGAAGAGCAATAAATTGACACTTATCTTTGTGTGTTGCAACCCGAATT
GTGGGAATAAATGGACGGATGACGATGCACGGTGATGCAAAGGGAAGGAT
GGAAGGAGTAAGGGGAGGCTGGTGGGTGTATACAGGCAACAGTGAAAGGG
ACGCAGATGGAGAGGAAGAGGGGAAGAGGGAGAATCATTTATCTTTCCTT
TTCTTCTTTTGAGCGGATGGAGAAGGACGGAGACGAGAAATACGTTATGA
GTTTGTAAACTAAATCAAACGCAAAATCTTGAGCAGGCATGAAGAAGACA
GACCACCATCTGCTGTTGGCTGCTGCTGCTACTGCTGCTGCAACCGTTGT
T
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protein sequence of NO20G01160.1

>NO20G01160.1-protein ID=NO20G01160.1-protein|Name=NO20G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MKFCPNCNFILYPKEDKDDRKLIYYCRSQRCDHEEDAPDPYVFRNQVIKT
RTVNLDHVLSAVANDPTLQRSTVDCPKCHHHEAVLIQSTQNVKSNKLTLI
FVCCNPNCGNKWTDDDAR*
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mRNA from alignment at chr20:359595..360909-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01160.1 ID=NO20G01160.1|Name=NO20G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1315bp|location=Sequence derived from alignment at chr20:359595..360909- (Nannochloropsis oceanica)
AGGTCGTCCAATGTCTCGAACAACCGAACCAAAAACCTTGTGTGGCTTAG
TTCGTTAAAGAACTCATTCACAGCCATAGCATTGACCTTATCGAGGGTAA
CTGTAACATATTCTGGCGCCGTTGTGACGATGTGATGTGTGTGAGAGTTG
TTTGTGTCACATTGGATGAATGATGAAAAGCAATCCTTCGCTTGCACTTC
GCCCCCCCACCAACAACAAGCCGCCGCCCCAGACCTTCGGCTTCAGCTTG
CCTTGCCAAATTAATTCACACGCTCATGAACAGTCTTCTCCACAACTACC
CAAAAGAGTATCACAGGCGAGGAACGGAGTGTGCAGCGGCGGTGGCGGTA
TCTAGTGTGTGTCGCAGCGGCAGACAAAATGAAATTCTGCCCCAACTGGT
AAATTTCGCTGCATCATGCCTCCCCCACCTGCTCCTCTCTCCCTACCGCG
GCATCTTACTCACCTACCCATCCTCCTTATATACAATCTCCGCGCTTCCT
CAGCAACTTTATTCTGTACCCGAAGGAGGACAAGGACGACCGGAAGCTTA
TTTACTACTGTCGGTCCCAGCGGTGCGACCACGAGGAGGATGCCCCGGAC
CCGTACGTTTTCCGCAACCAAGTCATCAAGACCCGCACGTAAGCATTGTG
TGTCTGTCTATCTAGTGTCTATGTGTGCTGCGCAAGCAATGTGTGTCTGT
CCTATATTGTCTATGTTTGCTAGCCTTTGGTTACATTGCGTGTGTCTCAC
TCTCTTATGTTGCTTCTCGGCTATTGGCATCGTGCGTATGCTGTTTTCGT
CTTCGATATCTCACGGTAGTCCTCTCATTTTCCCCTCCCTCGCTCAGAGT
TAATCTCGACCACGTTCTCTCCGCCGTGGCAAACGACCCAACTCTACAGC
GCTCTACCGTCGACTGCCCTAAGTGCCACCATCATGAAGCCGTTTTGATT
CAATCGACGCAGAATGTGAAGAGCAATAAATTGACACTTATCTTTGTGTG
TTGCAACCCGAATTGTGGGAATAAATGGACGGATGACGATGCACGGTGAT
GCAAAGGGAAGGATGGAAGGAGTAAGGGGAGGCTGGTGGGTGTATACAGG
CAACAGTGAAAGGGACGCAGATGGAGAGGAAGAGGGGAAGAGGGAGAATC
ATTTATCTTTCCTTTTCTTCTTTTGAGCGGATGGAGAAGGACGGAGACGA
GAAATACGTTATGAGTTTGTAAACTAAATCAAACGCAAAATCTTGAGCAG
GCATGAAGAAGACAGACCACCATCTGCTGTTGGCTGCTGCTGCTACTGCT
GCTGCAACCGTTGTT
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Coding sequence (CDS) from alignment at chr20:359595..360909-

>NO20G01160.1 ID=NO20G01160.1|Name=NO20G01160.1|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at chr20:359595..360909- (Nannochloropsis oceanica)
ATGAAATTCTGCCCCAACTGCAACTTTATTCTGTACCCGAAGGAGGACAA
GGACGACCGGAAGCTTATTTACTACTGTCGGTCCCAGCGGTGCGACCACG
AGGAGGATGCCCCGGACCCGTACGTTTTCCGCAACCAAGTCATCAAGACC
CGCACAGTTAATCTCGACCACGTTCTCTCCGCCGTGGCAAACGACCCAAC
TCTACAGCGCTCTACCGTCGACTGCCCTAAGTGCCACCATCATGAAGCCG
TTTTGATTCAATCGACGCAGAATGTGAAGAGCAATAAATTGACACTTATC
TTTGTGTGTTGCAACCCGAATTGTGGGAATAAATGGACGGATGACGATGC
ACGGTGA
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Synonyms
Publications