NO20G01090, NO20G01090 (gene) Nannochloropsis oceanica

Overview
NameNO20G01090
Unique NameNO20G01090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1354
Alignment locationchr20:346222..347575 +

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Properties
Property NameValue
DescriptionLeukocyte cysteine proteinase inhibitor 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:346222..347575 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004869cysteine-type endopeptidase inhibitor activity
GO:0004866endopeptidase inhibitor activity
GO:0030234enzyme regulator activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR000010Prot_inh_cystat
IPR001713Prot_inh_stefinA
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
GO:0009987cellular process
Homology
BLAST of NO20G01090 vs. NCBI_GenBank
Match: EWM22123.1 (cystatin b [Nannochloropsis gaditana])

HSP 1 Score: 148.3 bits (373), Expect = 1.300e-32
Identity = 70/100 (70.00%), Postives = 82/100 (82.00%), Query Frame = 0
Query:    2 SPPSGLIGGFGATKETPDVETTALLSSVRGEVEKQLSTTFSTFEPHSVRTQVVAGTNYRCKVHVGDSKYVHMVVHQPLPHTKEPAKLMSAEGGKTLEDAL 102
            +P +GLIGGFG+     D E TALL+ ++ EVEK L+TTF  F PH++RTQVVAGTNYRCKV VGD  +VH+VVHQPLPHTKEPAKL+SAEGGKTL DAL
Sbjct:   76 APTAGLIGGFGSASPAADPEVTALLTKMKPEVEKHLATTFKMFAPHTLRTQVVAGTNYRCKVDVGDGNFVHVVVHQPLPHTKEPAKLLSAEGGKTLSDAL 175          
BLAST of NO20G01090 vs. NCBI_GenBank
Match: PAA47134.1 (hypothetical protein BOX15_Mlig030572g4, partial [Macrostomum lignano] >PAA50960.1 hypothetical protein BOX15_Mlig030572g3, partial [Macrostomum lignano])

HSP 1 Score: 82.8 bits (203), Expect = 6.800e-13
Identity = 44/99 (44.44%), Postives = 56/99 (56.57%), Query Frame = 0
Query:    3 PPSGLIGGFGATKETPDVETTALLSSVRGEVEKQLSTTFSTFEPHSVRTQVVAGTNYRCKVHVGDSKYVHMVVHQPLPHTKEPAKLMSAEGGKTLEDAL 102
            P   L GG G  ++ P  E   LL ++R  VE +L  +   FEP  V TQVVAGTNY  KVH+G   +VH+ V +PLPHT EP  L   +  K+  D L
Sbjct:    5 PKMPLCGGTGEARQ-PSPEEVELLVAMRPHVESRLGRSVEQFEPRLVATQVVAGTNYFAKVHIGSDSFVHIRVFKPLPHTNEPPALHGIQAEKSASDEL 102          
BLAST of NO20G01090 vs. NCBI_GenBank
Match: PAA46629.1 (hypothetical protein BOX15_Mlig034106g1, partial [Macrostomum lignano] >PAA55130.1 hypothetical protein BOX15_Mlig014280g2, partial [Macrostomum lignano])

HSP 1 Score: 82.4 bits (202), Expect = 8.800e-13
Identity = 44/99 (44.44%), Postives = 56/99 (56.57%), Query Frame = 0
Query:    3 PPSGLIGGFGATKETPDVETTALLSSVRGEVEKQLSTTFSTFEPHSVRTQVVAGTNYRCKVHVGDSKYVHMVVHQPLPHTKEPAKLMSAEGGKTLEDAL 102
            P   L GG G  ++ P  E   LL ++R  VE +L  +   FEP  V TQVVAGTNY  KVH+G   +VH+ V +PLPHT EP  L   +  K+  D L
Sbjct:    5 PNMPLCGGTGEARQ-PSPEEVELLVAMRPHVESRLGRSVEQFEPRLVATQVVAGTNYFAKVHIGSDSFVHIRVFKPLPHTNEPPALHGIQAEKSASDEL 102          
BLAST of NO20G01090 vs. NCBI_GenBank
Match: CAH04421.1 (cystatin [Euplotes vannus])

HSP 1 Score: 82.0 bits (201), Expect = 1.200e-12
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0
Query:    8 IGGFGATKETPDVETTALLSSVRGEVEKQLSTTFSTFEPHSVRTQVVAGTNYRCKVHVGDSKYVHMVVHQPLPHTKEPAKLMSAEGGKTLEDAL 102
            +G +G  K   D E  A ++  +  VE    TTF  FE    +TQ+VAGTN+  KV +GD +Y H+V+H+ LPHT E     S  GGKTL+D L
Sbjct:    1 MGAYGELK--TDAEGLAKVAGWKSHVEATAGTTFDAFEVIHYKTQIVAGTNWEAKVKIGDDEYAHVVIHEKLPHTGEEPSCSSFNGGKTLDDPL 92          
BLAST of NO20G01090 vs. NCBI_GenBank
Match: XP_009065250.1 (hypothetical protein LOTGIDRAFT_229619 [Lottia gigantea] >ESO84124.1 hypothetical protein LOTGIDRAFT_229619 [Lottia gigantea])

HSP 1 Score: 77.8 bits (190), Expect = 2.200e-11
Identity = 35/92 (38.04%), Postives = 58/92 (63.04%), Query Frame = 0
Query:   10 GFGATKETPDVETTALLSSVRGEVEKQLSTTFSTFEPHSVRTQVVAGTNYRCKVHVGDSKYVHMVVHQPLPHTKEPAKLMSAEGGKTLEDAL 102
            G  +  +T D E   + + +R E+EK+ +TTF  F     ++QVVAGTNY  K+H+G+ KYVH+ + +PLPH  +  +L + + GK+ E+ +
Sbjct:    4 GGASEVKTADDEIQKICNDIRKELEKKANTTFEEFTAKQYKSQVVAGTNYFVKIHIGNEKYVHVRIFKPLPHVSQDVELSNHQLGKSAEEEI 95          
BLAST of NO20G01090 vs. NCBI_GenBank
Match: XP_004696958.1 (PREDICTED: cystatin-B [Echinops telfairi])

HSP 1 Score: 76.6 bits (187), Expect = 4.800e-11
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 0
Query:    7 LIGGFGATKETPDVETTALLSSVRGEVEKQLSTTFSTFEPHSVRTQVVAGTNYRCKVHVGDSKYVHMVVHQPLPHTKEPAKLMSAEGGKTLEDAL 102
            ++GG  ATK     E   ++  V+ +VE++ + TF  F+    ++QVVAGTNY  KVHVG+  ++H+ VH+ LPH K+P  L + +  KT  D L
Sbjct:    2 MLGGTSATKPA-TAEIQEIVDKVKAQVEEKENKTFQVFKAVEYKSQVVAGTNYFIKVHVGNENFMHLNVHESLPHEKKPLTLSNYQTNKTKHDEL 95          
BLAST of NO20G01090 vs. NCBI_GenBank
Match: XP_004654673.1 (PREDICTED: cystatin-B [Jaculus jaculus])

HSP 1 Score: 75.9 bits (185), Expect = 8.300e-11
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 0
Query:   18 PDVETTALLSSVRGEVEKQLSTTFSTFEPHSVRTQVVAGTNYRCKVHVGDSKYVHMVVHQPLPHTKEPAKLMSAEGGKTLEDAL 102
            P     +L + V+ ++E++ +  FS F+  S R+QVVAGTNY  KV VGD +++HM V +PLPH  +P  L+S +  KT +DAL
Sbjct:   17 PAFNPNSLEARVKSQLEQKENRKFSVFKAVSYRSQVVAGTNYFIKVDVGDGEFIHMTVLEPLPHENKPLSLLSYQTKKTQDDAL 100          
BLAST of NO20G01090 vs. NCBI_GenBank
Match: XP_022293841.1 (cystatin-B-like [Crassostrea virginica])

HSP 1 Score: 75.9 bits (185), Expect = 8.300e-11
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 0
Query:   12 GATKET--PDVETTALLSSVRGEVEKQLSTTFSTFEPHSVRTQVVAGTNYRCKVHVGDSKYVHMVVHQPLPHTKEPAKLMSAEGGKTLEDAL 102
            G T E    D E  A+++ V+  VE+++     T+ P S +TQVVAGTNY  KV+VGD +++H+ +  PLPHT  P +L   + GKT ED L
Sbjct:    4 GGTSEAKPADAEIQAIINEVKAAVEEKVGKKLETYSPVSYKTQVVAGTNYFVKVNVGD-EHLHLRIFAPLPHTGNPKELADLQKGKTAEDEL 94          
BLAST of NO20G01090 vs. NCBI_GenBank
Match: XP_014351120.1 (PREDICTED: cystatin-A [Latimeria chalumnae])

HSP 1 Score: 75.1 bits (183), Expect = 1.400e-10
Identity = 40/93 (43.01%), Postives = 50/93 (53.76%), Query Frame = 0
Query:    9 GGFGATKETPDVETTALLSSVRGEVEKQLSTTFSTFEPHSVRTQVVAGTNYRCKVHVGDSKYVHMVVHQPLPHTKEPAKLMSAEGGKTLEDAL 102
            GG   TK   D E  A    V+   E++   TF  F+    +TQVVAG NY  KVHVG   YVH+ VH+PLPH  E   L S +  K+ +D L
Sbjct:   11 GGLANTKPA-DPEVQAFCDQVKAAAEEKAGKTFEIFDAKRYKTQVVAGMNYFIKVHVGGEDYVHLRVHKPLPHKSEAISLASIQTSKSEQDEL 102          
BLAST of NO20G01090 vs. NCBI_GenBank
Match: XP_009683372.1 (PREDICTED: cystatin-A [Struthio camelus australis])

HSP 1 Score: 74.3 bits (181), Expect = 2.400e-10
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 0
Query:    9 GGFGATK-ETPDVETTALLSSVRGEVEKQLSTTFSTFEPHSVRTQVVAGTNYRCKVHVGDSKYVHMVVHQPLPHTKEPAKLMSAEGGKTLEDAL 102
            GG   TK  TP+V+   ++  V+ + E +++ T+ TF+  + RTQVVAGTNY  KV V D+ YVH+ V Q LPH  +   L+S + GKT +D L
Sbjct:    4 GGLSDTKPATPEVQ--HIVHQVKPQFESRVNETYGTFQAIAYRTQVVAGTNYFIKVQVSDTMYVHLRVFQGLPHENQGPSLVSYQTGKTRDDPL 95          
The following BLAST results are available for this feature:
BLAST of NO20G01090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22123.11.300e-3270.00cystatin b [Nannochloropsis gaditana][more]
PAA47134.16.800e-1344.44hypothetical protein BOX15_Mlig030572g4, partial [... [more]
PAA46629.18.800e-1344.44hypothetical protein BOX15_Mlig034106g1, partial [... [more]
CAH04421.11.200e-1243.62cystatin [Euplotes vannus][more]
XP_009065250.12.200e-1138.04hypothetical protein LOTGIDRAFT_229619 [Lottia gig... [more]
XP_004696958.14.800e-1140.00PREDICTED: cystatin-B [Echinops telfairi][more]
XP_004654673.18.300e-1144.05PREDICTED: cystatin-B [Jaculus jaculus][more]
XP_022293841.18.300e-1143.48cystatin-B-like [Crassostrea virginica][more]
XP_014351120.11.400e-1043.01PREDICTED: cystatin-A [Latimeria chalumnae][more]
XP_009683372.12.400e-1043.62PREDICTED: cystatin-A [Struthio camelus australis][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002639NSK002639Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01090.1NO20G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640305gene_6323Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100060g13gene8317Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01090.1NO20G01090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01090 ID=NO20G01090|Name=NO20G01090|organism=Nannochloropsis oceanica|type=gene|length=1354bp
CTCCTTGGTTGGTTGCTTCGCGCGTTGTGCAGGCTTTGCCATTAAGACGT
GCTGCTAGGAGTCTCATCGTCCTTCATGCCCCAAACATACAGCTTTAAGC
ATACATCTACGCAAGTACAGGGTCCTTCGGCGCAGTGCTTTATGTGCGAG
CAGCTTTCTTCGGCCCGAGGCCTCCTGCCTTATTGCCCGTCTTGTTCCTC
GACAGCTTTGCCCGCCACAGCTTCGTCGTATCAATCATACCCTCATGCTC
CCTATCCTCACTCTCCTACGCTCACAGTTCTCATCATCGACTGCTTTCTT
CTCCCCTTTTCGTCACCATGTCTCCCCCTTCCGGTTTGATCGGTGGGTTT
GGTGCGACCAAGGAGACCCCGGACGTGGAGACGACGGCCCTGCTCAGCAG
CGTCAGGGGCGAGGTGGAAAAGgtacgccgtggagtttggatgcaatacg
gcaccatatgtttttggtttatagcagacaagcacattgggaggatgtca
tgtcatctatgaaattttcattgttgcgctgatgcaaggctctttgtgtc
ctctgctaccttttattcacctacacctcatagCAACTCTCTACGACCTT
CAGCACGTTTGAGCCTCACAGCGTCCGCACGCAAGTGgtacgtacatcct
tatgctgaagcaaagtgagcattgacctctatttcttgtccttctcttca
tcctcctcccttctccagtattcctctctccgtttgtcatcctccttcct
ctatttttttccttttccttttttcaccccagGTGGCGGGCACCAACTAC
CGGTGCAAAGTCCACGTTGGGGATTCGAAATACGTGCATATGGTGGTGCA
TCAACCCCTGCCTCATACCAAGGAGCCGGCAAAGgtatgttcatgctttt
tgggcgacagggcgggatggatataagtgagcacgtgcgtgttgtcgcgg
cgggccagaacattagtatgagatgataacacgaaaatgggcatattgca
tgatctcaccttccttcccttctcctgtttgtaaatcgcccgcagTTGAT
GTCCGCCGAGGGAGGCAAGACGTTGGAGGACGCCCTCTAAATGACGTGCA
AAGTATCGTGGAATGGTGGTGATGACGCCGCTGGGAAGGAATTGCTACAG
AGGATAGTCATTTATCATCGAGAAAGTAGTCATTCAAAGGGATATGTGTG
CATAACGCGGATAAAAGATGGAAAAACAGAGCAATCGGCACATAGAAAGA
AGCGTGGAGGATCATGTGGTGTGCCAAACGAGAGACACAAACAAAAAGCA
ACATAAAAATGTGGGCACTTTTTAAACCACATCATGAGATCTCTCGATGT
CTAT
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protein sequence of NO20G01090.1

>NO20G01090.1-protein ID=NO20G01090.1-protein|Name=NO20G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MSPPSGLIGGFGATKETPDVETTALLSSVRGEVEKQLSTTFSTFEPHSVR
TQVVAGTNYRCKVHVGDSKYVHMVVHQPLPHTKEPAKLMSAEGGKTLEDA
L*
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Synonyms
Publications