NO20G01090.1, NO20G01090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01090.1
Unique NameNO20G01090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length887
Alignment locationchr20:346222..347575 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:346222..347575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01090.1 vs.
Match: EWM22123.1 (cystatin b [Nannochloropsis gaditana])

HSP 1 Score: 148.3 bits (373), Expect = 1.300e-32
Identity = 70/100 (70.00%), Postives = 82/100 (82.00%), Query Frame = 0 
Query:    2 SPPSGLIGGFGATKETPDVETTALLSSVRGEVEKQLSTTFSTFEPHSVRTQVVAGTNYRCKVHVGDSKYVHMVVHQPLPHTKEPAKLMSAEGGKTLEDAL 102
            +P +GLIGGFG+     D E TALL+ ++ EVEK L+TTF  F PH++RTQVVAGTNYRCKV VGD  +VH+VVHQPLPHTKEPAKL+SAEGGKTL DAL
Sbjct:   76 APTAGLIGGFGSASPAADPEVTALLTKMKPEVEKHLATTFKMFAPHTLRTQVVAGTNYRCKVDVGDGNFVHVVVHQPLPHTKEPAKLLSAEGGKTLSDAL 175
The following BLAST results are available for this feature:
BLAST of NO20G01090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22123.11.300e-3270.00cystatin b [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01090NO20G01090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01090.1NO20G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01090.1.cds1NO20G01090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01090.1.cds2NO20G01090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01090.1.cds3NO20G01090.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01090.1.cds4NO20G01090.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01090.1 ID=NO20G01090.1|Name=NO20G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=887bp
CTCCTTGGTTGGTTGCTTCGCGCGTTGTGCAGGCTTTGCCATTAAGACGT
GCTGCTAGGAGTCTCATCGTCCTTCATGCCCCAAACATACAGCTTTAAGC
ATACATCTACGCAAGTACAGGGTCCTTCGGCGCAGTGCTTTATGTGCGAG
CAGCTTTCTTCGGCCCGAGGCCTCCTGCCTTATTGCCCGTCTTGTTCCTC
GACAGCTTTGCCCGCCACAGCTTCGTCGTATCAATCATACCCTCATGCTC
CCTATCCTCACTCTCCTACGCTCACAGTTCTCATCATCGACTGCTTTCTT
CTCCCCTTTTCGTCACCATGTCTCCCCCTTCCGGTTTGATCGGTGGGTTT
GGTGCGACCAAGGAGACCCCGGACGTGGAGACGACGGCCCTGCTCAGCAG
CGTCAGGGGCGAGGTGGAAAAGCAACTCTCTACGACCTTCAGCACGTTTG
AGCCTCACAGCGTCCGCACGCAAGTGGTGGCGGGCACCAACTACCGGTGC
AAAGTCCACGTTGGGGATTCGAAATACGTGCATATGGTGGTGCATCAACC
CCTGCCTCATACCAAGGAGCCGGCAAAGTTGATGTCCGCCGAGGGAGGCA
AGACGTTGGAGGACGCCCTCTAAATGACGTGCAAAGTATCGTGGAATGGT
GGTGATGACGCCGCTGGGAAGGAATTGCTACAGAGGATAGTCATTTATCA
TCGAGAAAGTAGTCATTCAAAGGGATATGTGTGCATAACGCGGATAAAAG
ATGGAAAAACAGAGCAATCGGCACATAGAAAGAAGCGTGGAGGATCATGT
GGTGTGCCAAACGAGAGACACAAACAAAAAGCAACATAAAAATGTGGGCA
CTTTTTAAACCACATCATGAGATCTCTCGATGTCTAT
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protein sequence of NO20G01090.1

>NO20G01090.1-protein ID=NO20G01090.1-protein|Name=NO20G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MSPPSGLIGGFGATKETPDVETTALLSSVRGEVEKQLSTTFSTFEPHSVR
TQVVAGTNYRCKVHVGDSKYVHMVVHQPLPHTKEPAKLMSAEGGKTLEDA
L*
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mRNA from alignment at chr20:346222..347575+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01090.1 ID=NO20G01090.1|Name=NO20G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1354bp|location=Sequence derived from alignment at chr20:346222..347575+ (Nannochloropsis oceanica)
CTCCTTGGTTGGTTGCTTCGCGCGTTGTGCAGGCTTTGCCATTAAGACGT
GCTGCTAGGAGTCTCATCGTCCTTCATGCCCCAAACATACAGCTTTAAGC
ATACATCTACGCAAGTACAGGGTCCTTCGGCGCAGTGCTTTATGTGCGAG
CAGCTTTCTTCGGCCCGAGGCCTCCTGCCTTATTGCCCGTCTTGTTCCTC
GACAGCTTTGCCCGCCACAGCTTCGTCGTATCAATCATACCCTCATGCTC
CCTATCCTCACTCTCCTACGCTCACAGTTCTCATCATCGACTGCTTTCTT
CTCCCCTTTTCGTCACCATGTCTCCCCCTTCCGGTTTGATCGGTGGGTTT
GGTGCGACCAAGGAGACCCCGGACGTGGAGACGACGGCCCTGCTCAGCAG
CGTCAGGGGCGAGGTGGAAAAGGTACGCCGTGGAGTTTGGATGCAATACG
GCACCATATGTTTTTGGTTTATAGCAGACAAGCACATTGGGAGGATGTCA
TGTCATCTATGAAATTTTCATTGTTGCGCTGATGCAAGGCTCTTTGTGTC
CTCTGCTACCTTTTATTCACCTACACCTCATAGCAACTCTCTACGACCTT
CAGCACGTTTGAGCCTCACAGCGTCCGCACGCAAGTGGTACGTACATCCT
TATGCTGAAGCAAAGTGAGCATTGACCTCTATTTCTTGTCCTTCTCTTCA
TCCTCCTCCCTTCTCCAGTATTCCTCTCTCCGTTTGTCATCCTCCTTCCT
CTATTTTTTTCCTTTTCCTTTTTTCACCCCAGGTGGCGGGCACCAACTAC
CGGTGCAAAGTCCACGTTGGGGATTCGAAATACGTGCATATGGTGGTGCA
TCAACCCCTGCCTCATACCAAGGAGCCGGCAAAGGTATGTTCATGCTTTT
TGGGCGACAGGGCGGGATGGATATAAGTGAGCACGTGCGTGTTGTCGCGG
CGGGCCAGAACATTAGTATGAGATGATAACACGAAAATGGGCATATTGCA
TGATCTCACCTTCCTTCCCTTCTCCTGTTTGTAAATCGCCCGCAGTTGAT
GTCCGCCGAGGGAGGCAAGACGTTGGAGGACGCCCTCTAAATGACGTGCA
AAGTATCGTGGAATGGTGGTGATGACGCCGCTGGGAAGGAATTGCTACAG
AGGATAGTCATTTATCATCGAGAAAGTAGTCATTCAAAGGGATATGTGTG
CATAACGCGGATAAAAGATGGAAAAACAGAGCAATCGGCACATAGAAAGA
AGCGTGGAGGATCATGTGGTGTGCCAAACGAGAGACACAAACAAAAAGCA
ACATAAAAATGTGGGCACTTTTTAAACCACATCATGAGATCTCTCGATGT
CTAT
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Coding sequence (CDS) from alignment at chr20:346222..347575+

>NO20G01090.1 ID=NO20G01090.1|Name=NO20G01090.1|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at chr20:346222..347575+ (Nannochloropsis oceanica)
ATGTCTCCCCCTTCCGGTTTGATCGGTGGGTTTGGTGCGACCAAGGAGAC
CCCGGACGTGGAGACGACGGCCCTGCTCAGCAGCGTCAGGGGCGAGGTGG
AAAAGCAACTCTCTACGACCTTCAGCACGTTTGAGCCTCACAGCGTCCGC
ACGCAAGTGGTGGCGGGCACCAACTACCGGTGCAAAGTCCACGTTGGGGA
TTCGAAATACGTGCATATGGTGGTGCATCAACCCCTGCCTCATACCAAGG
AGCCGGCAAAGTTGATGTCCGCCGAGGGAGGCAAGACGTTGGAGGACGCC
CTCTAA
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Synonyms
Publications