NO20G00850, NO20G00850 (gene) Nannochloropsis oceanica

Overview
NameNO20G00850
Unique NameNO20G00850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2421
Alignment locationchr20:282652..285072 +

Link to JBrowse

Properties
Property NameValue
DescriptionMethylenetetrahydrofolate dehydrogenase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:282652..285072 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004488methylenetetrahydrofolate dehydrogenase (NADP+) activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
IPR000672THF_DH/CycHdrlase
IPR020630THF_DH/CycHdrlase_cat_dom
IPR020631THF_DH/CycHdrlase_NAD-bd_dom
Homology
[Close]
BLAST of NO20G00850 vs. NCBI_GenBank
Match: EWM22137.1 (methylenetetrahydrofolate dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 607.4 bits (1565), Expect = 2.800e-170
Identity = 303/362 (83.70%), Postives = 321/362 (88.67%), Query Frame = 0 
Query:    6 TTTAEITANGTAKP-GPAVKIDVTEIAKPYREEVRTAIRDKCGGVGPKLVAFLANTDPYARQYAEWTGRACEADGIRYELRIITENELEEKLYEANEDPSVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFNLYRNIRFMDAPSSLPPSSSGNPSQRPSAFAPQLKCLLPCTALSVVKILETIGGYNLDLPIGERMKGKVVSIINRSEIVGRPLGALLANDGADIFSVDIDSIYHFRRGQLLKTTETPESAVRRSDVIVCGVPVKSYKLPTAWVKPGAIVVNVASYKNVNEEELLNVPGVKYVPLVGKVTIAMLERNLIRLYEQYHAEASPGKDFKYVLENRPPMLKG 367
            +T      NG A P GPAVK+DVTEIAKPYREEVR AI D+ GGVGPKLVAFLANTDPYARQYAEWTGRACEADGIRYELRII ENELE+KLYEANED SVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFNLYRNIRFMDA +S P            A  P+LKCLLPCTALSVVKILE+IGGY+L LP+GERM GK VSIINRSEIVGRPLGALLANDGADI+SVDIDSIYHFRRGQLL+T+ETPESAVRRSDVIVCGVPVK YKLPTAWVKPGAIVVNVASYKNV EE LL VPGVK+VPLVGKVTIAMLERNL+RL+ QYHAEA+PGKDF+Y LENRPP  +G
Sbjct:    3 STEPTANCNGAAAPLGPAVKVDVTEIAKPYREEVRAAIHDRYGGVGPKLVAFLANTDPYARQYAEWTGRACEADGIRYELRIINENELEQKLYEANEDASVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFNLYRNIRFMDAATSAP------------ARGPELKCLLPCTALSVVKILESIGGYDLSLPVGERMTGKTVSIINRSEIVGRPLGALLANDGADIYSVDIDSIYHFRRGQLLQTSETPESAVRRSDVIVCGVPVKDYKLPTAWVKPGAIVVNVASYKNVEEEALLQVPGVKFVPLVGKVTIAMLERNLMRLFAQYHAEAAPGKDFRYYLENRPPAQEG 352
[Close]
BLAST of NO20G00850 vs. NCBI_GenBank
Match: CBJ32057.1 (putative methylene tetrahydrofolate dehydrogenase [Ectocarpus siliculosus])

HSP 1 Score: 409.1 bits (1050), Expect = 1.500e-110
Identity = 194/326 (59.51%), Postives = 248/326 (76.07%), Query Frame = 0 
Query:   18 KPGPAVKIDVTEIAKPYREEVRTAIRDKCGGVGPKLVAFLANTDPYARQYAEWTGRACEADGIRYELRIITENELEEKLYEANEDPSVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFNLYRNIRFMDAPSSLPPSSSGNPSQRPSAFAPQLKCLLPCTALSVVKILETIGGYNLDLPIGERMKGKVVSIINRSEIVGRPLGALLANDGADIFSVDIDSIYHFRRGQLLKTTETPESAVRRSDVIVCGVPVKSYKLPTAWVKPGAIVVNVASYKNVNEEELLNVPGVKYVPLVGKVTIAMLERNLIRLYEQY 344
            K     K+D   +A+P+R+EVR  I DK GGVGP+ V  LANTDP AR+YAEWTGRAC  DGIRYE+R     ELE +L E N DP VHG++IYYPVFG FPSF+GGSMDDYLRD+VS +KDVEGLS TYR NLY N+RF+D                    A   KC+LPCT L+VVKI+E +G Y+  LP+G+R++GK V+IINRSEIVGRPL A+LANDGA I+S+D+DSI+ F+RG L KT  TPE AV++SDV+V GVP K+YKL  +W+K G+ ++NV+++KNV+EE++L +PGV+YVP+VGKVT+AMLERNL+RL+E +
Sbjct:    8 KAAAGSKVDAGIVAEPFRQEVRKYIEDKLGGVGPRFVGILANTDPAARKYAEWTGRACIKDGIRYEVRECDPEELEARLEECNGDPEVHGVMIYYPVFGAFPSFFGGSMDDYLRDTVSIRKDVEGLSNTYRRNLYHNVRFVDE-------------------AKTKKCILPCTPLAVVKIMEHVGVYDESLPVGDRLQGKTVTIINRSEIVGRPLAAMLANDGATIYSIDVDSIFVFKRGALRKTEATPEEAVKQSDVVVTGVPSKAYKLSASWLKEGSAIINVSTFKNVDEEDVLKIPGVRYVPMVGKVTVAMLERNLLRLHENF 314
[Close]
BLAST of NO20G00850 vs. NCBI_GenBank
Match: OQR86769.1 (tetrahydrofolate dehydrogenase [Achlya hypogyna])

HSP 1 Score: 400.6 bits (1028), Expect = 5.300e-108
Identity = 190/324 (58.64%), Postives = 244/324 (75.31%), Query Frame = 0 
Query:   21 PAVKIDVTEIAKPYREEVRTAIRDKCGGVGPKLVAFLANTDPYARQYAEWTGRACEADGIRYELRIITENELEEKLYEANEDPSVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFNLYRNIRFMDAPSSLPPSSSGNPSQRPSAFAPQLKCLLPCTALSVVKILETIGGYNLDLPIGERMKGKVVSIINRSEIVGRPLGALLANDGADIFSVDIDSIYHFRRGQLLKTTETPESAVRRSDVIVCGVPVKSYKLPTAWVKPGAIVVNVASYKNVNEEELLNVPGVKYVPLVGKVTIAMLERNLIRLYEQYH 345
            PAVKI+ +++A P+   ++  +R +  G+GPKLV FLAN D  AR+YAEWTG+AC  DGIRYELR + +  L+E + +AN DP VHGIL+YYP FG FPSFYGG+MDD++RDS+S KKDVEGL   YR NLYRNIR++D   +                    KC+LPCT L++VKILE +  YN   P GE + GK ++IINRS+IVGRPL A+LANDGAD++SVDI+S+Y FRRG+L++ TETPE A ++SDVI+ GVPV SYKLP +WV  G +V+NVAS+KNV+E  L+ +PGVKYVPLVGKVT+AMLERNL+RLYE +H
Sbjct:    4 PAVKINASDVAAPFSAAMKEYVRTELRGIGPKLVGFLANDDDSARKYAEWTGKACVRDGIRYELREVPKERLQEAVEDANRDPEVHGILVYYPCFGTFPSFYGGTMDDFIRDSISIKKDVEGLCQYYRGNLYRNIRYVDDERT-------------------QKCVLPCTPLAIVKILEHLNVYNFAQPEGEHLLGKRITIINRSDIVGRPLAAMLANDGADVYSVDINSLYLFRRGKLIECTETPEEAAKKSDVIITGVPVASYKLPLSWVSEGTVVINVASHKNVDEAALMQIPGVKYVPLVGKVTVAMLERNLMRLYENFH 308
[Close]
BLAST of NO20G00850 vs. NCBI_GenBank
Match: GAY00399.1 (putative methylene tetrahydrofolate dehydrogenase [Pythium insidiosum])

HSP 1 Score: 400.2 bits (1027), Expect = 6.900e-108
Identity = 192/324 (59.26%), Postives = 243/324 (75.00%), Query Frame = 0 
Query:   21 PAVKIDVTEIAKPYREEVRTAIRDKCGGVGPKLVAFLANTDPYARQYAEWTGRACEADGIRYELRIITENELEEKLYEANEDPSVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFNLYRNIRFMDAPSSLPPSSSGNPSQRPSAFAPQLKCLLPCTALSVVKILETIGGYNLDLPIGERMKGKVVSIINRSEIVGRPLGALLANDGADIFSVDIDSIYHFRRGQLLKTTETPESAVRRSDVIVCGVPVKSYKLPTAWVKPGAIVVNVASYKNVNEEELLNVPGVKYVPLVGKVTIAMLERNLIRLYEQYH 345
            P  K+D  EIA+P+   VR  I ++  G GPKLV  LAN DP A++YAEWTG+AC  DGIRYELR + +++L E L  AN DP VHGIL+YYP FG FPSFYGG+MDD+LRDS+S KKDVEGL   YR NLYRNIRF+D                    A   KC+LPCT L++VKILE +  Y++  P G+++ G  +++INRS+IVGRPL A+LANDGAD+FSVDI+S+Y FRRG+L++T ETPE+A ++S VI+ GVPVKSYKLP  WV P  +VVNVAS+KNV+E+ LL +PGV+YVPLVGKVT+AML+RNL+RLYE +H
Sbjct:   10 PGRKVDAAEIAEPFSIAVRQYIAEEMHGHGPKLVGLLANGDPSAKKYAEWTGKACRRDGIRYELREVEKDDLLEALESANRDPDVHGILVYYPCFGSFPSFYGGTMDDFLRDSISIKKDVEGLGQFYRGNLYRNIRFVDE-------------------AMTQKCVLPCTPLAIVKILEHLNVYDMRQPAGQQLNGVKITVINRSDIVGRPLAAMLANDGADVFSVDIESLYLFRRGKLIQTDETPETACKKSQVIITGVPVKSYKLPLDWVSPNTVVVNVASFKNVDEDALLQIPGVQYVPLVGKVTVAMLQRNLLRLYENFH 314
[Close]
BLAST of NO20G00850 vs. NCBI_GenBank
Match: OQS02450.1 (tetrahydrofolate dehydrogenase [Thraustotheca clavata])

HSP 1 Score: 399.1 bits (1024), Expect = 1.500e-107
Identity = 190/328 (57.93%), Postives = 246/328 (75.00%), Query Frame = 0 
Query:   17 AKPGPAVKIDVTEIAKPYREEVRTAIRDKCGGVGPKLVAFLANTDPYARQYAEWTGRACEADGIRYELRIITENELEEKLYEANEDPSVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFNLYRNIRFMDAPSSLPPSSSGNPSQRPSAFAPQLKCLLPCTALSVVKILETIGGYNLDLPIGERMKGKVVSIINRSEIVGRPLGALLANDGADIFSVDIDSIYHFRRGQLLKTTETPESAVRRSDVIVCGVPVKSYKLPTAWVKPGAIVVNVASYKNVNEEELLNVPGVKYVPLVGKVTIAMLERNLIRLYEQYH 345
            ++  PAVK+   ++A P+   ++  +R++  G+GPKLV FLAN D  AR+YAEWTG+AC  DGIRYELR + +  L+E + EANEDP VHGIL+YYP FG FPSFYGG+MDD++RDS+S KKDVEGL   YR NLYRNIR++D                    A   KC+LPCT L++VKILE +G YN + P GE + GK ++IINRS+IVGRPL A+LANDGAD++SVDI+S+Y FRRG+L+++T+TPESA ++S VI+ GVPV SYKLP  WV    +V+NVAS+KNV+E  L+ + GVKYVPLVGKVT+AMLERNL+RLYE +H
Sbjct:    2 SQANPAVKVSAADVAAPFSVAMKEYVRNELRGIGPKLVGFLANEDESARKYAEWTGKACVRDGIRYELREVPKERLQEAVEEANEDPEVHGILVYYPCFGSFPSFYGGTMDDFIRDSISIKKDVEGLCQYYRGNLYRNIRYVDD-------------------ACTQKCVLPCTPLAIVKILEHLGIYNFNQPEGEHLLGKRITIINRSDIVGRPLAAMLANDGADVYSVDINSLYLFRRGKLIESTDTPESAAKKSHVIITGVPVASYKLPLEWVSENTVVINVASHKNVDEAALMKIAGVKYVPLVGKVTVAMLERNLMRLYENFH 310
[Close]
BLAST of NO20G00850 vs. NCBI_GenBank
Match: XP_008877007.1 (hypothetical protein H310_11921 [Aphanomyces invadans] >ETV94245.1 hypothetical protein H310_11921 [Aphanomyces invadans])

HSP 1 Score: 396.4 bits (1017), Expect = 9.900e-107
Identity = 190/322 (59.01%), Postives = 239/322 (74.22%), Query Frame = 0 
Query:   23 VKIDVTEIAKPYREEVRTAIRDKCGGVGPKLVAFLANTDPYARQYAEWTGRACEADGIRYELRIITENELEEKLYEANEDPSVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFNLYRNIRFMDAPSSLPPSSSGNPSQRPSAFAPQLKCLLPCTALSVVKILETIGGYNLDLPIGERMKGKVVSIINRSEIVGRPLGALLANDGADIFSVDIDSIYHFRRGQLLKTTETPESAVRRSDVIVCGVPVKSYKLPTAWVKPGAIVVNVASYKNVNEEELLNVPGVKYVPLVGKVTIAMLERNLIRLYEQYH 345
            +K+D   +A P+ E ++  +  +  G+GPKLV FLAN D  AR+YAEWTG+AC  DGIRYELR + +  L+E + +AN DP VHGIL+YYP FG FPSFYGG+MDD++RDS+S KKDVEGL   YR NLYRNIR++D   +                    KC+LPCT L+++KILE +  YN   P GE + G+ ++IINRS+IVGRPL A+LANDGAD+FSVDI S+Y FRRG+L++T ETPESA R+SDVI+ GVPVKSYKLP  WV  G +V+NVASYKNV+EE LL +P V YVPLVGKVT+AMLERNL+RLYE +H
Sbjct:    1 MKLDAGAVAAPFCEAMKEYVNKELHGMGPKLVGFLANDDASARKYAEWTGKACIRDGIRYELREVQKEFLQEAVEDANRDPEVHGILVYYPCFGSFPSFYGGTMDDFIRDSISIKKDVEGLCHFYRSNLYRNIRYVDDERT-------------------QKCVLPCTPLAIIKILEHLNIYNFGQPEGEHLLGRRITIINRSDIVGRPLAAMLANDGADVFSVDISSLYLFRRGKLIETDETPESACRKSDVIITGVPVKSYKLPLEWVSEGTVVINVASYKNVDEEALLKIPNVTYVPLVGKVTVAMLERNLMRLYENFH 303
[Close]
BLAST of NO20G00850 vs. NCBI_GenBank
Match: XP_008604197.1 (methylenetetrahydrofolate dehydrogenase (NAD+) [Saprolegnia diclina VS20] >EQC42774.1 methylenetetrahydrofolate dehydrogenase (NAD+) [Saprolegnia diclina VS20])

HSP 1 Score: 395.6 bits (1015), Expect = 1.700e-106
Identity = 187/324 (57.72%), Postives = 241/324 (74.38%), Query Frame = 0 
Query:   21 PAVKIDVTEIAKPYREEVRTAIRDKCGGVGPKLVAFLANTDPYARQYAEWTGRACEADGIRYELRIITENELEEKLYEANEDPSVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFNLYRNIRFMDAPSSLPPSSSGNPSQRPSAFAPQLKCLLPCTALSVVKILETIGGYNLDLPIGERMKGKVVSIINRSEIVGRPLGALLANDGADIFSVDIDSIYHFRRGQLLKTTETPESAVRRSDVIVCGVPVKSYKLPTAWVKPGAIVVNVASYKNVNEEELLNVPGVKYVPLVGKVTIAMLERNLIRLYEQYH 345
            PAVK++ TE+A P+   ++  +R +  G+GPKLV FLAN D  AR+YAEWTG+AC  DGIRYELR + +  L+E + +AN DP VHGIL+YYP FG FPSFYGG+MDD++RDS+S KKDVEGL   YR NLYRNIR++D   +                    KC+LPCT L++VKILE +  YN   P GE + GK ++IINRS+IVGRPL A+LANDGAD++SVDI+S+Y FRRG+L++ +ETP  A ++S VI+ GVPV SYKLP  WV  G +++NVAS+KNV+E  L+ +PGVKYVPLVGKVT+AMLERNL+RLYE +H
Sbjct:    4 PAVKVNATEVAAPFSAAMKEYVRTELRGIGPKLVGFLANDDESARKYAEWTGKACVRDGIRYELREVPKERLQEAVEDANRDPEVHGILVYYPCFGTFPSFYGGTMDDFIRDSISIKKDVEGLCQYYRGNLYRNIRYVDDERT-------------------QKCVLPCTPLAIVKILEHLNVYNFGQPEGEHLLGKRITIINRSDIVGRPLAAMLANDGADVYSVDINSLYLFRRGKLIECSETPAEAAKKSHVIITGVPVASYKLPLEWVSEGTVIINVASHKNVDEAALMQIPGVKYVPLVGKVTVAMLERNLMRLYENFH 308
[Close]
BLAST of NO20G00850 vs. NCBI_GenBank
Match: XP_009840443.1 (hypothetical protein H257_14368 [Aphanomyces astaci] >ETV70000.1 hypothetical protein H257_14368 [Aphanomyces astaci])

HSP 1 Score: 394.8 bits (1013), Expect = 2.900e-106
Identity = 189/322 (58.70%), Postives = 240/322 (74.53%), Query Frame = 0 
Query:   23 VKIDVTEIAKPYREEVRTAIRDKCGGVGPKLVAFLANTDPYARQYAEWTGRACEADGIRYELRIITENELEEKLYEANEDPSVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFNLYRNIRFMDAPSSLPPSSSGNPSQRPSAFAPQLKCLLPCTALSVVKILETIGGYNLDLPIGERMKGKVVSIINRSEIVGRPLGALLANDGADIFSVDIDSIYHFRRGQLLKTTETPESAVRRSDVIVCGVPVKSYKLPTAWVKPGAIVVNVASYKNVNEEELLNVPGVKYVPLVGKVTIAMLERNLIRLYEQYH 345
            +K+D   +A P+ + ++  +  +  GVGPKLV FLAN D  AR+YAEWTG+AC  DGIRYELR + +  L+E + +AN DP VHGIL+YYP FG FPSFYGG+MDD++RDS+S KKDVEGL   YR NLYRNIR++D   +                    KC+LPCT L+++KILE +  YN   P GE + G+ ++IINRS+IVGRPL A+LANDGAD+FSVDI+S+Y FRRG+L++T ETPESA R+SDVI+ GVPVKSYKLP  WV  G +V+NVASYKNV+E+ LL +P V YVPLVGKVT+AMLERNL+RLYE +H
Sbjct:    1 MKLDAGAVAAPFCDAMKEYVNKELHGVGPKLVGFLANDDASARKYAEWTGKACIRDGIRYELREVQKEFLQEAVEDANRDPEVHGILVYYPCFGTFPSFYGGTMDDFVRDSISIKKDVEGLCHFYRSNLYRNIRYVDDERT-------------------QKCVLPCTPLAIIKILEHLNIYNFGQPEGEHLLGRRITIINRSDIVGRPLAAMLANDGADVFSVDINSLYLFRRGKLIETDETPESACRKSDVIITGVPVKSYKLPLDWVSEGTVVINVASYKNVDEQALLQIPNVTYVPLVGKVTVAMLERNLMRLYENFH 303
[Close]
BLAST of NO20G00850 vs. NCBI_GenBank
Match: ETI32582.1 (hypothetical protein F443_20619, partial [Phytophthora parasitica P1569] >ETK72950.1 hypothetical protein L915_20033, partial [Phytophthora parasitica] >ETL26421.1 hypothetical protein L916_19908, partial [Phytophthora parasitica] >ETL79616.1 hypothetical protein L917_19772, partial [Phytophthora parasitica] >ETM32860.1 hypothetical protein L914_19807, partial [Phytophthora parasitica] >ETO61298.1 hypothetical protein F444_20636, partial [Phytophthora parasitica P1976] >ETP02420.1 hypothetical protein F441_20489, partial [Phytophthora parasitica CJ01A1])

HSP 1 Score: 384.0 bits (985), Expect = 5.100e-103
Identity = 190/339 (56.05%), Postives = 243/339 (71.68%), Query Frame = 0 
Query:    6 TTTAEITANGTAKPGPAVKIDVTEIAKPYREEVRTAIRDKCGGVGPKLVAFLANTDPYARQYAEWTGRACEADGIRYELRIITENELEEKLYEANEDPSVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFNLYRNIRFMDAPSSLPPSSSGNPSQRPSAFAPQLKCLLPCTALSVVKILETIGGYNLDLPIGERMKGKVVSIINRSEIVGRPLGALLANDGADIFSVDIDSIYHFRRGQLLKTTETPESAVRRSDVIVCGVPVKSYKLPTAWVKPGAIVVNVASYKNVNEEELLNVPGVKYVPLVGKVTIAMLERNLIRLYEQYH 345
            T+T  I    TA     VK++   IA+P+   VR  I    GGVGPKLV  LA+ DP A++YAEWTG+AC  DGIRYELR + ++EL E L +AN DP VHGIL+YYP FG FPSF+GG+MDD+LRDS+S KKDVEGL   YR NLYRNIR++D   +                    KC+LPCT L++VKILE +G Y+   P G+ + G  +++INRS+IVGRPL A+LANDGAD++S DIDS+Y FRRG+L+ + ET E+A ++S VI+ GVPVKSYKLP  WV    +++NVAS+KNV+E ELL + GV+YVPLVGKVT+AMLERNL+RLYE +H
Sbjct:   11 TSTTNIKMTDTA----GVKVNAATIAEPFSLAVRQYIEQDMGGVGPKLVGLLAHGDPAAKKYAEWTGKACARDGIRYELREVPKDELLEALEKANNDPDVHGILVYYPCFGAFPSFFGGTMDDFLRDSISIKKDVEGLCQFYRGNLYRNIRYVDDEKT-------------------QKCVLPCTPLAIVKILEHLGIYDKTKPAGDHLAGVNITVINRSDIVGRPLAAMLANDGADVYSADIDSLYLFRRGKLIPSEETQETACKKSRVIITGVPVKSYKLPLEWVSENTVIINVASFKNVDEAELLKIKGVQYVPLVGKVTVAMLERNLLRLYENFH 326
[Close]
BLAST of NO20G00850 vs. NCBI_GenBank
Match: XP_008897899.1 (hypothetical protein PPTG_05912 [Phytophthora parasitica INRA-310] >ETN16799.1 hypothetical protein PPTG_05912 [Phytophthora parasitica INRA-310])

HSP 1 Score: 384.0 bits (985), Expect = 5.100e-103
Identity = 185/322 (57.45%), Postives = 237/322 (73.60%), Query Frame = 0 
Query:   23 VKIDVTEIAKPYREEVRTAIRDKCGGVGPKLVAFLANTDPYARQYAEWTGRACEADGIRYELRIITENELEEKLYEANEDPSVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFNLYRNIRFMDAPSSLPPSSSGNPSQRPSAFAPQLKCLLPCTALSVVKILETIGGYNLDLPIGERMKGKVVSIINRSEIVGRPLGALLANDGADIFSVDIDSIYHFRRGQLLKTTETPESAVRRSDVIVCGVPVKSYKLPTAWVKPGAIVVNVASYKNVNEEELLNVPGVKYVPLVGKVTIAMLERNLIRLYEQYH 345
            VK++   IA+P+   VR  I    GGVGPKLV  LA+ DP A++YAEWTG+AC  DGIRYELR + ++EL E L +AN DP VHGIL+YYP FG FPSF+GG+MDD+LRDS+S KKDVEGL   YR NLYRNIR++D   +                    KC+LPCT L++VKILE +G Y+   P G+ + G  +++INRS+IVGRPL A+LANDGAD++S DIDS+Y FRRG+L+ + ET E+A ++S VI+ GVPVKSYKLP  WV    +++NVAS+KNV+E ELL + GV+YVPLVGKVT+AMLERNL+RLYE +H
Sbjct:    7 VKVNAATIAEPFSLAVRQYIEQDMGGVGPKLVGLLAHGDPAAKKYAEWTGKACARDGIRYELREVPKDELLEALEKANNDPDVHGILVYYPCFGAFPSFFGGTMDDFLRDSISIKKDVEGLCQFYRGNLYRNIRYVDDEKT-------------------QKCVLPCTPLAIVKILEHLGIYDKTKPAGDHLAGVNITVINRSDIVGRPLAAMLANDGADVYSADIDSLYLFRRGKLIPSEETQETACKKSRVIITGVPVKSYKLPLEWVSENTVIINVASFKNVDEAELLKIKGVQYVPLVGKVTVAMLERNLLRLYENFH 309
The following BLAST results are available for this feature:
BLAST of NO20G00850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22137.12.800e-17083.70methylenetetrahydrofolate dehydrogenase [Nannochlo... [more]
CBJ32057.11.500e-11059.51putative methylene tetrahydrofolate dehydrogenase ... [more]
OQR86769.15.300e-10858.64tetrahydrofolate dehydrogenase [Achlya hypogyna][more]
GAY00399.16.900e-10859.26putative methylene tetrahydrofolate dehydrogenase ... [more]
OQS02450.11.500e-10757.93tetrahydrofolate dehydrogenase [Thraustotheca clav... [more]
XP_008877007.19.900e-10759.01hypothetical protein H310_11921 [Aphanomyces invad... [more]
XP_008604197.11.700e-10657.72methylenetetrahydrofolate dehydrogenase (NAD+) [Sa... [more]
XP_009840443.12.900e-10658.70hypothetical protein H257_14368 [Aphanomyces astac... [more]
ETI32582.15.100e-10356.05hypothetical protein F443_20619, partial [Phytopht... [more]
XP_008897899.15.100e-10357.45hypothetical protein PPTG_05912 [Phytophthora para... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002616NSK002616Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00850.1NO20G00850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G00850.2NO20G00850.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594506gene_6298Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100064g3gene8297Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00850.1NO20G00850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G00850.2NO20G00850.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00850 ID=NO20G00850|Name=NO20G00850|organism=Nannochloropsis oceanica|type=gene|length=2421bp
ACGATGATTCGATTGTTTCTCTCCAAAGTTGACCTTGGCCATGCAGCGTT
CTTTTCTCCGCCCGCCCATCCCATGCTGTTTGGTCCGTGACATTTTGGTG
CTGGGGTCATTATGGCCTTGTAAATATGTTGAGCCTGCCTTTGATGTGAC
CTCCTCCACCCCCAGCCAAACTCGACAAAGACTGCCACTGGTTGTAAACA
TTCCCTTCCATCCGCTTGAGATGCCGCGGCATTATCCGTGTGTGCCGCAA
GCTGCCGCGTCTACTTGCGCAATACATGGTAATGAGCGGTCCGCAAATAT
TTGTCTTGATGGTCGATGTACAATGGAGTCAACTTTGTGGCTCTAGAAAA
TCCCGCGCCGCACACACCCCCGTTCCCCCCCTCCCCCCCACCTCCTCGTA
GGCTACCAAGCAGTTGTCTCTCGACTTCCCCTCATCCTCGTCCGACGACC
AGCCACCATCACCATGGCCGAGGCGACGACGACGACGGCAGAGATCACAG
CAAACGGGACGGCCAAGCCGGGTCCCGCTGTAAAAATCGATGTGACGGAG
ATTGCGAAGCCCTACCGCGAGGAGGTCCGTACCGCCATCCGAGACAAGTG
CGGCGGCGTGGGCCCGAAGCTGGTAGCTTTTTTGGCCAACACGgtgagac
atggctaataatctgcacgtccatgatattccgtgtttgtgcgcgtgcgc
gtatgtatacgtaccaagagaagtgggtgtcaggggtcatcatggtgggt
gggttggggtgggggagagtggtagacttttgctgtccaccgcgtcttct
catgtccctgtcgttacgcctacgatttatgccaaaatgcccctgcttgt
tcgatgcgcagtctcagtatcgcatccgctgacctgacaagtcctcctcc
ctctattcctgcccacagGACCCTTACGCTCGTCAGTATGCCGAATGGAC
TGGCCGTGCCTGCGAGGCGGACGGCATCCGCTACGAGCTCCGCATCATCA
CTGAAAATGAGCTGGAGGAGAAGCTATATGAAGCCAACGAAGATCCAAGT
GTGCATGGGATATTAATATACTACCCGGTCTTCGGGTTCTTCCCTTCTTT
TTATGGTGGGTCGATGGACGATTATTTGAGGGATTCGGTGTCGTTTAAGA
AGGACGTGGAAGGGCTGTCCTTCACTTACCGCTTTAACCTCTATAGAAAC
ATTCGGTTCATGGACGCCCCATCTTCCCTCCCTCCGTCGTCCTCCGGTAA
TCCCTCCCAAAGGCCGTCTGCTTTCGCACCACAATTGAAGTGTCTGTTGC
CGTGCACCGCGTTGAGTGTTGTGAAGATCCTCGAAACCATCGGCGGGTAC
AATTTGGACCTGCCCATCGGTGAGAGGATGAAAGGCAAGGTCGTGAGTAT
CATCAATCGAAGTGAGATTGTGGGGAGGCCTCTCGGCGCGCTCTTGGCGA
ACGATGGCGCGGACATTTTCTCTGTCGATATCGACTCGATCTACCATTTC
CGTCGAGGCCAACTGCTCAAAACGACCGAAACGCCTGAAAGCGCCGTTCG
ACGCTCGGACGTCATTGTCTGTGGTGTCCCAGTAAAAAGCTACAAGCTCC
CCACGGCATGGGTGAAGCCCGGGGCGATCGTCGTTAACGTCGCCAGTTAC
AAAAACGTCAACGAGGAAGAACTCCTCAACGTCCCGGGGGTGAAGTATGT
ACCATTGGTGGGAAAAGTGACAATTGCCATGCTAGAACGAAATCTGATCC
GACTGTACGAGCAGTACCACGCCGAAGCTTCGCCGGGAAAGGACTTCAAG
TACGTGTTGGAAAACCGACCTCCTATGCTGAAGGGTTGAAGGAGGGAAGG
AAGGAAGGAGGAGGGAGGTTGGATCGATGGCGGCTGCGACGTGGGATGTG
AGGACAGGAGAGAGAAAGGGTTTTTGATAGAGAATGCAAGAAAACCACAC
CAATTTTGATGCAAAAGAACATATACAAATATTTTCAAAGGGAGCGATGC
GCCGCAAAGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAAAAGGAGGAG
ACATGGGCAAGGCAAGTTTTTAATTGAAGATGGCACTGCAATTTAGACAA
GGGAGGAAGGGAAAAAGGACCTAGAAGAGCCGTGACAGATACATAGCTTC
TGGGAACATTTTTGAGGCCTCACTTTTGATAATTTATAGAGATAGCGGAC
ATAATTGAAGATGAAGAGCCGGCGTGGTAGTTGGATGGGTGGGCATGAAG
ACGAGGAGGGCGATCACTGTTGTTCCCTACCACGTCCTTCGCATTTCATT
GAATGGAGCTTGGTGGCATGGTTACCCAGGGCCAAGATTGAGAGTTAAAG
CCTTAAAAAAGAAAAGCCATTAATATTTTTGAAGGGTAGAAGTGAAAAGA
AGGAAGAGAAGAGGAAGTCGA
back to top

protein sequence of NO20G00850.1

>NO20G00850.1-protein ID=NO20G00850.1-protein|Name=NO20G00850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MQRSFLRPPIPCCLVRDILVLGSLWPCKYVEPAFDVTSSTPSQTRQRLPL
VVNIPFHPLEMPRHYPCVPQAAASTCAIHGYQAVVSRLPLILVRRPATIT
MAEATTTTAEITANGTAKPGPAVKIDVTEIAKPYREEVRTAIRDKCGGVG
PKLVAFLANTDPYARQYAEWTGRACEADGIRYELRIITENELEEKLYEAN
EDPSVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFN
LYRNIRFMDAPSSLPPSSSGNPSQRPSAFAPQLKCLLPCTALSVVKILET
IGGYNLDLPIGERMKGKVVSIINRSEIVGRPLGALLANDGADIFSVDIDS
IYHFRRGQLLKTTETPESAVRRSDVIVCGVPVKSYKLPTAWVKPGAIVVN
VASYKNVNEEELLNVPGVKYVPLVGKVTIAMLERNLIRLYEQYHAEASPG
KDFKYVLENRPPMLKG*
back to top

protein sequence of NO20G00850.2

>NO20G00850.2-protein ID=NO20G00850.2-protein|Name=NO20G00850.2|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MAEATTTTAEITANGTAKPGPAVKIDVTEIAKPYREEVRTAIRDKCGGVG
PKLVAFLANTDPYARQYAEWTGRACEADGIRYELRIITENELEEKLYEAN
EDPSVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFN
LYRNIRFMDAPSSLPPSSSGNPSQRPSAFAPQLKCLLPCTALSVVKILET
IGGYNLDLPIGERMKGKVVSIINRSEIVGRPLGALLANDGADIFSVDIDS
IYHFRRGQLLKTTETPESAVRRSDVIVCGVPVKSYKLPTAWVKPGAIVVN
VASYKNVNEEELLNVPGVKYVPLVGKVTIAMLERNLIRLYEQYHAEASPG
KDFKYVLENRPPMLKG*
back to top
Synonyms
Publications