NO20G00850.2, NO20G00850.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00850.2
Unique NameNO20G00850.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2146
Alignment locationchr20:282652..285072 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:282652..285072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO20G00850.2 vs.
Match: EWM22137.1 (methylenetetrahydrofolate dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 607.4 bits (1565), Expect = 2.800e-170
Identity = 303/362 (83.70%), Postives = 321/362 (88.67%), Query Frame = 0 
Query:    6 TTTAEITANGTAKP-GPAVKIDVTEIAKPYREEVRTAIRDKCGGVGPKLVAFLANTDPYARQYAEWTGRACEADGIRYELRIITENELEEKLYEANEDPSVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFNLYRNIRFMDAPSSLPPSSSGNPSQRPSAFAPQLKCLLPCTALSVVKILETIGGYNLDLPIGERMKGKVVSIINRSEIVGRPLGALLANDGADIFSVDIDSIYHFRRGQLLKTTETPESAVRRSDVIVCGVPVKSYKLPTAWVKPGAIVVNVASYKNVNEEELLNVPGVKYVPLVGKVTIAMLERNLIRLYEQYHAEASPGKDFKYVLENRPPMLKG 367
            +T      NG A P GPAVK+DVTEIAKPYREEVR AI D+ GGVGPKLVAFLANTDPYARQYAEWTGRACEADGIRYELRII ENELE+KLYEANED SVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFNLYRNIRFMDA +S P            A  P+LKCLLPCTALSVVKILE+IGGY+L LP+GERM GK VSIINRSEIVGRPLGALLANDGADI+SVDIDSIYHFRRGQLL+T+ETPESAVRRSDVIVCGVPVK YKLPTAWVKPGAIVVNVASYKNV EE LL VPGVK+VPLVGKVTIAMLERNL+RL+ QYHAEA+PGKDF+Y LENRPP  +G
Sbjct:    3 STEPTANCNGAAAPLGPAVKVDVTEIAKPYREEVRAAIHDRYGGVGPKLVAFLANTDPYARQYAEWTGRACEADGIRYELRIINENELEQKLYEANEDASVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFNLYRNIRFMDAATSAP------------ARGPELKCLLPCTALSVVKILESIGGYDLSLPVGERMTGKTVSIINRSEIVGRPLGALLANDGADIYSVDIDSIYHFRRGQLLQTSETPESAVRRSDVIVCGVPVKDYKLPTAWVKPGAIVVNVASYKNVEEEALLQVPGVKFVPLVGKVTIAMLERNLMRLFAQYHAEAAPGKDFRYYLENRPPAQEG 352
The following BLAST results are available for this feature:
BLAST of NO20G00850.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22137.12.800e-17083.70methylenetetrahydrofolate dehydrogenase [Nannochlo... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00850NO20G00850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00850.2NO20G00850.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00850.2.cds1NO20G00850.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00850.2.cds2NO20G00850.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00850.2 ID=NO20G00850.2|Name=NO20G00850.2|organism=Nannochloropsis oceanica|type=mRNA|length=2146bp
ACGATGATTCGATTGTTTCTCTCCAAAGTTGACCTTGGCCATGCAGCGTT
CTTTTCTCCGCCCGCCCATCCCATGCTGTTTGGTCCGTGACATTTTGGTG
CTGGGGTCATTATGGCCTTGTAAATATGTTGAGCCTGCCTTTGATGTGAC
CTCCTCCACCCCCAGCCAAACTCGACAAAGACTGCCACTGGTTGTAAACA
TTCCCTTCCATCCGCTTGAGATGCCGCGGCATTATCCGTGTGTGCCGCAA
GCTGCCGCGTCTACTTGCGCAATACATGGTAATGAGCGGTCCGCAAATAT
TTGTCTTGATGGTCGATGTACAATGGAGTCAACTTTGTGGCTCTAGAAAA
TCCCGCGCCGCACACACCCCCGTTCCCCCCCTCCCCCCCACCTCCTCGTA
GGCTACCAAGCAGTTGTCTCTCGACTTCCCCTCATCCTCGTCCGACGACC
AGCCACCATCACCATGGCCGAGGCGACGACGACGACGGCAGAGATCACAG
CAAACGGGACGGCCAAGCCGGGTCCCGCTGTAAAAATCGATGTGACGGAG
ATTGCGAAGCCCTACCGCGAGGAGGTCCGTACCGCCATCCGAGACAAGTG
CGGCGGCGTGGGCCCGAAGCTGGTAGCTTTTTTGGCCAACACGGACCCTT
ACGCTCGTCAGTATGCCGAATGGACTGGCCGTGCCTGCGAGGCGGACGGC
ATCCGCTACGAGCTCCGCATCATCACTGAAAATGAGCTGGAGGAGAAGCT
ATATGAAGCCAACGAAGATCCAAGTGTGCATGGGATATTAATATACTACC
CGGTCTTCGGGTTCTTCCCTTCTTTTTATGGTGGGTCGATGGACGATTAT
TTGAGGGATTCGGTGTCGTTTAAGAAGGACGTGGAAGGGCTGTCCTTCAC
TTACCGCTTTAACCTCTATAGAAACATTCGGTTCATGGACGCCCCATCTT
CCCTCCCTCCGTCGTCCTCCGGTAATCCCTCCCAAAGGCCGTCTGCTTTC
GCACCACAATTGAAGTGTCTGTTGCCGTGCACCGCGTTGAGTGTTGTGAA
GATCCTCGAAACCATCGGCGGGTACAATTTGGACCTGCCCATCGGTGAGA
GGATGAAAGGCAAGGTCGTGAGTATCATCAATCGAAGTGAGATTGTGGGG
AGGCCTCTCGGCGCGCTCTTGGCGAACGATGGCGCGGACATTTTCTCTGT
CGATATCGACTCGATCTACCATTTCCGTCGAGGCCAACTGCTCAAAACGA
CCGAAACGCCTGAAAGCGCCGTTCGACGCTCGGACGTCATTGTCTGTGGT
GTCCCAGTAAAAAGCTACAAGCTCCCCACGGCATGGGTGAAGCCCGGGGC
GATCGTCGTTAACGTCGCCAGTTACAAAAACGTCAACGAGGAAGAACTCC
TCAACGTCCCGGGGGTGAAGTATGTACCATTGGTGGGAAAAGTGACAATT
GCCATGCTAGAACGAAATCTGATCCGACTGTACGAGCAGTACCACGCCGA
AGCTTCGCCGGGAAAGGACTTCAAGTACGTGTTGGAAAACCGACCTCCTA
TGCTGAAGGGTTGAAGGAGGGAAGGAAGGAAGGAGGAGGGAGGTTGGATC
GATGGCGGCTGCGACGTGGGATGTGAGGACAGGAGAGAGAAAGGGTTTTT
GATAGAGAATGCAAGAAAACCACACCAATTTTGATGCAAAAGAACATATA
CAAATATTTTCAAAGGGAGCGATGCGCCGCAAAGAGGAGGAGGAGGAGGA
AGAGGAAGAGGAGGAAAAGGAGGAGACATGGGCAAGGCAAGTTTTTAATT
GAAGATGGCACTGCAATTTAGACAAGGGAGGAAGGGAAAAAGGACCTAGA
AGAGCCGTGACAGATACATAGCTTCTGGGAACATTTTTGAGGCCTCACTT
TTGATAATTTATAGAGATAGCGGACATAATTGAAGATGAAGAGCCGGCGT
GGTAGTTGGATGGGTGGGCATGAAGACGAGGAGGGCGATCACTGTTGTTC
CCTACCACGTCCTTCGCATTTCATTGAATGGAGCTTGGTGGCATGGTTAC
CCAGGGCCAAGATTGAGAGTTAAAGCCTTAAAAAAGAAAAGCCATTAATA
TTTTTGAAGGGTAGAAGTGAAAAGAAGGAAGAGAAGAGGAAGTCGA
back to top

protein sequence of NO20G00850.2

>NO20G00850.2-protein ID=NO20G00850.2-protein|Name=NO20G00850.2|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MAEATTTTAEITANGTAKPGPAVKIDVTEIAKPYREEVRTAIRDKCGGVG
PKLVAFLANTDPYARQYAEWTGRACEADGIRYELRIITENELEEKLYEAN
EDPSVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFN
LYRNIRFMDAPSSLPPSSSGNPSQRPSAFAPQLKCLLPCTALSVVKILET
IGGYNLDLPIGERMKGKVVSIINRSEIVGRPLGALLANDGADIFSVDIDS
IYHFRRGQLLKTTETPESAVRRSDVIVCGVPVKSYKLPTAWVKPGAIVVN
VASYKNVNEEELLNVPGVKYVPLVGKVTIAMLERNLIRLYEQYHAEASPG
KDFKYVLENRPPMLKG*
back to top

mRNA from alignment at chr20:282652..285072+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00850.2 ID=NO20G00850.2|Name=NO20G00850.2|organism=Nannochloropsis oceanica|type=mRNA|length=2421bp|location=Sequence derived from alignment at chr20:282652..285072+ (Nannochloropsis oceanica)
ACGATGATTCGATTGTTTCTCTCCAAAGTTGACCTTGGCCATGCAGCGTT
CTTTTCTCCGCCCGCCCATCCCATGCTGTTTGGTCCGTGACATTTTGGTG
CTGGGGTCATTATGGCCTTGTAAATATGTTGAGCCTGCCTTTGATGTGAC
CTCCTCCACCCCCAGCCAAACTCGACAAAGACTGCCACTGGTTGTAAACA
TTCCCTTCCATCCGCTTGAGATGCCGCGGCATTATCCGTGTGTGCCGCAA
GCTGCCGCGTCTACTTGCGCAATACATGGTAATGAGCGGTCCGCAAATAT
TTGTCTTGATGGTCGATGTACAATGGAGTCAACTTTGTGGCTCTAGAAAA
TCCCGCGCCGCACACACCCCCGTTCCCCCCCTCCCCCCCACCTCCTCGTA
GGCTACCAAGCAGTTGTCTCTCGACTTCCCCTCATCCTCGTCCGACGACC
AGCCACCATCACCATGGCCGAGGCGACGACGACGACGGCAGAGATCACAG
CAAACGGGACGGCCAAGCCGGGTCCCGCTGTAAAAATCGATGTGACGGAG
ATTGCGAAGCCCTACCGCGAGGAGGTCCGTACCGCCATCCGAGACAAGTG
CGGCGGCGTGGGCCCGAAGCTGGTAGCTTTTTTGGCCAACACGGTGAGAC
ATGGCTAATAATCTGCACGTCCATGATATTCCGTGTTTGTGCGCGTGCGC
GTATGTATACGTACCAAGAGAAGTGGGTGTCAGGGGTCATCATGGTGGGT
GGGTTGGGGTGGGGGAGAGTGGTAGACTTTTGCTGTCCACCGCGTCTTCT
CATGTCCCTGTCGTTACGCCTACGATTTATGCCAAAATGCCCCTGCTTGT
TCGATGCGCAGTCTCAGTATCGCATCCGCTGACCTGACAAGTCCTCCTCC
CTCTATTCCTGCCCACAGGACCCTTACGCTCGTCAGTATGCCGAATGGAC
TGGCCGTGCCTGCGAGGCGGACGGCATCCGCTACGAGCTCCGCATCATCA
CTGAAAATGAGCTGGAGGAGAAGCTATATGAAGCCAACGAAGATCCAAGT
GTGCATGGGATATTAATATACTACCCGGTCTTCGGGTTCTTCCCTTCTTT
TTATGGTGGGTCGATGGACGATTATTTGAGGGATTCGGTGTCGTTTAAGA
AGGACGTGGAAGGGCTGTCCTTCACTTACCGCTTTAACCTCTATAGAAAC
ATTCGGTTCATGGACGCCCCATCTTCCCTCCCTCCGTCGTCCTCCGGTAA
TCCCTCCCAAAGGCCGTCTGCTTTCGCACCACAATTGAAGTGTCTGTTGC
CGTGCACCGCGTTGAGTGTTGTGAAGATCCTCGAAACCATCGGCGGGTAC
AATTTGGACCTGCCCATCGGTGAGAGGATGAAAGGCAAGGTCGTGAGTAT
CATCAATCGAAGTGAGATTGTGGGGAGGCCTCTCGGCGCGCTCTTGGCGA
ACGATGGCGCGGACATTTTCTCTGTCGATATCGACTCGATCTACCATTTC
CGTCGAGGCCAACTGCTCAAAACGACCGAAACGCCTGAAAGCGCCGTTCG
ACGCTCGGACGTCATTGTCTGTGGTGTCCCAGTAAAAAGCTACAAGCTCC
CCACGGCATGGGTGAAGCCCGGGGCGATCGTCGTTAACGTCGCCAGTTAC
AAAAACGTCAACGAGGAAGAACTCCTCAACGTCCCGGGGGTGAAGTATGT
ACCATTGGTGGGAAAAGTGACAATTGCCATGCTAGAACGAAATCTGATCC
GACTGTACGAGCAGTACCACGCCGAAGCTTCGCCGGGAAAGGACTTCAAG
TACGTGTTGGAAAACCGACCTCCTATGCTGAAGGGTTGAAGGAGGGAAGG
AAGGAAGGAGGAGGGAGGTTGGATCGATGGCGGCTGCGACGTGGGATGTG
AGGACAGGAGAGAGAAAGGGTTTTTGATAGAGAATGCAAGAAAACCACAC
CAATTTTGATGCAAAAGAACATATACAAATATTTTCAAAGGGAGCGATGC
GCCGCAAAGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAAAAGGAGGAG
ACATGGGCAAGGCAAGTTTTTAATTGAAGATGGCACTGCAATTTAGACAA
GGGAGGAAGGGAAAAAGGACCTAGAAGAGCCGTGACAGATACATAGCTTC
TGGGAACATTTTTGAGGCCTCACTTTTGATAATTTATAGAGATAGCGGAC
ATAATTGAAGATGAAGAGCCGGCGTGGTAGTTGGATGGGTGGGCATGAAG
ACGAGGAGGGCGATCACTGTTGTTCCCTACCACGTCCTTCGCATTTCATT
GAATGGAGCTTGGTGGCATGGTTACCCAGGGCCAAGATTGAGAGTTAAAG
CCTTAAAAAAGAAAAGCCATTAATATTTTTGAAGGGTAGAAGTGAAAAGA
AGGAAGAGAAGAGGAAGTCGA
back to top

Coding sequence (CDS) from alignment at chr20:282652..285072+

>NO20G00850.2 ID=NO20G00850.2|Name=NO20G00850.2|organism=Nannochloropsis oceanica|type=CDS|length=1101bp|location=Sequence derived from alignment at chr20:282652..285072+ (Nannochloropsis oceanica)
ATGGCCGAGGCGACGACGACGACGGCAGAGATCACAGCAAACGGGACGGC
CAAGCCGGGTCCCGCTGTAAAAATCGATGTGACGGAGATTGCGAAGCCCT
ACCGCGAGGAGGTCCGTACCGCCATCCGAGACAAGTGCGGCGGCGTGGGC
CCGAAGCTGGTAGCTTTTTTGGCCAACACGGACCCTTACGCTCGTCAGTA
TGCCGAATGGACTGGCCGTGCCTGCGAGGCGGACGGCATCCGCTACGAGC
TCCGCATCATCACTGAAAATGAGCTGGAGGAGAAGCTATATGAAGCCAAC
GAAGATCCAAGTGTGCATGGGATATTAATATACTACCCGGTCTTCGGGTT
CTTCCCTTCTTTTTATGGTGGGTCGATGGACGATTATTTGAGGGATTCGG
TGTCGTTTAAGAAGGACGTGGAAGGGCTGTCCTTCACTTACCGCTTTAAC
CTCTATAGAAACATTCGGTTCATGGACGCCCCATCTTCCCTCCCTCCGTC
GTCCTCCGGTAATCCCTCCCAAAGGCCGTCTGCTTTCGCACCACAATTGA
AGTGTCTGTTGCCGTGCACCGCGTTGAGTGTTGTGAAGATCCTCGAAACC
ATCGGCGGGTACAATTTGGACCTGCCCATCGGTGAGAGGATGAAAGGCAA
GGTCGTGAGTATCATCAATCGAAGTGAGATTGTGGGGAGGCCTCTCGGCG
CGCTCTTGGCGAACGATGGCGCGGACATTTTCTCTGTCGATATCGACTCG
ATCTACCATTTCCGTCGAGGCCAACTGCTCAAAACGACCGAAACGCCTGA
AAGCGCCGTTCGACGCTCGGACGTCATTGTCTGTGGTGTCCCAGTAAAAA
GCTACAAGCTCCCCACGGCATGGGTGAAGCCCGGGGCGATCGTCGTTAAC
GTCGCCAGTTACAAAAACGTCAACGAGGAAGAACTCCTCAACGTCCCGGG
GGTGAAGTATGTACCATTGGTGGGAAAAGTGACAATTGCCATGCTAGAAC
GAAATCTGATCCGACTGTACGAGCAGTACCACGCCGAAGCTTCGCCGGGA
AAGGACTTCAAGTACGTGTTGGAAAACCGACCTCCTATGCTGAAGGGTTG
A
back to top
Synonyms
Publications