NO20G00830, NO20G00830 (gene) Nannochloropsis oceanica

Overview
NameNO20G00830
Unique NameNO20G00830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2333
Alignment locationchr20:278030..280362 -

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Properties
Property NameValue
DescriptionLeucine-rich repeat, ribonuclease inhibitor subtype
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:278030..280362 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Homology
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BLAST of NO20G00830 vs. NCBI_GenBank
Match: EWM22138.1 (Leucine-rich repeat, ribonuclease inhibitor subtype [Nannochloropsis gaditana])

HSP 1 Score: 302.4 bits (773), Expect = 4.000e-78
Identity = 217/545 (39.82%), Postives = 264/545 (48.44%), Query Frame = 0 
Query:   67 DPLPRLPESLFDIVASYLPQRDVLRCRLTAKHHHAAFPKTLRRLELSFHHAGRVDWPVFGALKSLHIGLGGKGLVGTGEKYSPLGALFPPTPPALTGPSLV-IVP-------SLFPHLKELNLIGLMLGDARMASLWAGLGRLEQLEILNLDGNELTDQSLVALAQEIVGEHPXXXXXXXXXXXXXXXXXXXXXXXXXXXPELVSSCGSPVGTPFPRLTSLQLSSNQLGDAGVAWLLRALAKASVSLRILDLSDNCLGDGXXXXXXXXXXXXXXXXXXREVCQALVETEAGMRLEELWLSYNQLTDGGLNGLSRKVIANRRLPCLQRLELESNHVGNDGVGSLXXXXXXXXXXXXXXXXXXXRYHGCR---------------------------PGNLIATAGAVALAVALASERTSLKVLSLAWNDLRDAGMVAFAEELNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHWLERLELSNNSIGDTGVQALAAALQSAPPLARLVSIDLTGNDFHELGIGALAAIADGGR 577
            DPL  LPESL  ++AS+LP +DVL CRL  K H+ AFPKTLRRL+L F  +  VDW  F  L+ LH+G GGK          PL  LFPP     +  S V I+P        L P L+EL+++GL L D  +A LW G+GRL +LE LNLDGN L+D SL A+A+E+                            XXXX             PF RL  L+LS NQ    GVA LL AL  A + LR+LDL+DN LG                      +C+ L   EAG R+EELWLSY  +TD  L   +  VI   +LP L RLELESN +GN GV +L                XXX                                  GN +A  GA+ALA  + ++ TSL+ L+LAWNDL D GMVAFAE +                                              LERLELSNNSIGD G+ ALAAAL+ AP LARL +IDLTGNDFH LG+ AL  +  GGR
Sbjct:  135 DPLIGLPESLLTVMASFLPVKDVLCCRLVGKRHYRAFPKTLRRLQLPFPRSDMVDWSAFACLECLHLGPGGKSFSVHNASTHPLTRLFPPRSVRESYFSAVEILPWPFDVGRPLLPRLRELHMVGLGLDDDHLALLWHGIGRLTELECLNLDGNNLSDASLEAMAREVTA-------------------FLLPSVSXXXXXXXXXXXXXXXXGPFSRLRVLKLSQNQFTAQGVARLLTALTGAGIYLRVLDLADNDLGSVGESRREGEAARGSRGL----LCETLATMEAGARMEELWLSYTGMTDESLEAFASLVIGPGKLPRLARLELESNKIGNAGVEALAAALSAGAPVASPASCXXXXXXXXXXXXXXXXXXXXXXXXXXRCSRLRRLDVSGNWVAAPGAMALARVMTAQTTSLQCLNLAWNDLGDTGMVAFAEHV-------------------------------CKGGGGGREEEPMATLERLELSNNSIGDAGMHALAAALRRAPALARLHAIDLTGNDFHALGLMALEKVMKGGR 625
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BLAST of NO20G00830 vs. NCBI_GenBank
Match: XP_005854609.1 (lrr and pyd domains-containing 3-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU21749.1 lrr and pyd domains-containing 3-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 244.2 bits (622), Expect = 1.300e-60
Identity = 174/438 (39.73%), Postives = 215/438 (49.09%), Query Frame = 0 
Query:   67 DPLPRLPESLFDIVASYLPQRDVLRCRLTAKHHHAAFPKTLRRLELSFHHAGRVDWPVFGALKSLHIGLGGKGLVGTGEKYSPLGALFPPTPPALTGPSLV-IVP-------SLFPHLKELNLIGLMLGDARMASLWAGLGRLEQLEILNLDGNELTDQSLVALAQEIVGEHPXXXXXXXXXXXXXXXXXXXXXXXXXXXPELVSSCGSPVGTPFPRLTSLQLSSNQLGDAGVAWLLRALAKASVSLRILDLSDNCLGDGXXXXXXXXXXXXXXXXXXREVCQALVETEAGMRLEELWLSYNQLTDGGLNGLSRKVIANRRLPCLQRLELESNHVGNDGVGSLXXXXXXXXXXXXXXXXXXXRYHGCR---------------------------PGNLIATAGAVALAVALASERTSLKVLSLAWNDLRDAGMVAFA 470
            DPL  LPESL  ++AS+LP +DVL CRL  K H+ AFPKTLRRL+L F  +  VDW  F  L+ LH+G GGK          PL  LFPP     +  S V I+P        L P L+EL+++GL L D  +A LW G+GRL +LE LNLDGN L+D SL A+A+E+                            XXXX             PF RL  L+LS NQ    GVA LL AL  A + LR+LDL+DN LG                      +C+ L   EAG R+EELWLSY  +TD  L   +  VI   +LP L RLELESN +GN GV +L                XXX                                  GN +A  GA+ALA  + ++ TSL+ L+LAWNDL D GMVAFA
Sbjct:   92 DPLIGLPESLLTVMASFLPVKDVLCCRLVGKRHYRAFPKTLRRLQLPFPRSDMVDWSAFACLECLHLGPGGKSFSVHNASTHPLTRLFPPRSVRESYFSAVEILPWPFDVGRPLLPRLRELHMVGLGLDDDHLALLWHGIGRLTELECLNLDGNNLSDASLEAMAREVTA-------------------FLLPSVSXXXXXXXXXXXXXXXXGPFSRLRVLKLSQNQFTAQGVARLLTALTGAGIYLRVLDLADNDLGSVGESRREGEAARGSRGL----LCETLATMEAGARMEELWLSYTGMTDESLEAFASLVIGPGKLPRLARLELESNKIGNAGVEALAAALSAGAPVASPASCXXXXXXXXXXXXXXXXXXXXXXXXXXRCSRLRRLDVSGNWVAAPGAMALARVMTAQTTSLQCLNLAWNDLGDTGMVAFA 506
The following BLAST results are available for this feature:
BLAST of NO20G00830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22138.14.000e-7839.82Leucine-rich repeat, ribonuclease inhibitor subtyp... [more]
XP_005854609.11.300e-6039.73lrr and pyd domains-containing 3-like protein, par... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002614NSK002614Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00830.1NO20G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|89492gene_6296Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100064g5gene8295Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00830.1NO20G00830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00830 ID=NO20G00830|Name=NO20G00830|organism=Nannochloropsis oceanica|type=gene|length=2333bp
ATGGCGGGGTTTGCGGCCCGTCTAAGGGCGTCATCGACCTCCCCTCCAAG
GCATCATCAGCCTCAAACCAAATCACCTGCCCGCCGTCAAAGCGTCCCCT
CTACCTCCGCCTCCACCTCCATCTCCCCGAACCCCCGTCGCCGCCTCTTC
TCCAGCAGTCACAATCTCACGGCGACCAACCCGACCTGCTGGTACCAAGA
CCCTCTGCCCCGCCTTCCCGAGTCTCTGTTCGATATTGTCGCCTCCTACT
TGCCACAACGTGACGTTCTCCGCTGCCGTCTCACCGCCAAACACCACCAT
GCTGCTTTCCCAAAAACCCTCCGACGGCTTGAGCTCTCGTTTCACCACGC
TGGACGGGTAGACTGGCCCGTCTTTGGGGCCTTAAAGAGCCTCCATATTG
GGCTTGGCGGAAAGGGATTGGTGGGAACCGGGGAGAAATACAGCCCGTTA
GGAGCGCTCTTCCCCCCGACCCCTCCTGCCCTTACAGGACCCTCGTTGGT
GATAGTGCCTTCTCTTTTCCCGCATTTGAAGGAACTGAATTTGATTGGGC
TTATGTTGGGAGATGCACGCATGGCATCTTTGTGGGCCGGGCTGGGAAGA
TTAGAACAATTGGAAATTTTAAATTTGGACGGTAACGAATTGACGGACCA
AAGCCTAGTGGCCTTGGCGCAGGAGATAGTAGGGGAGCACCCGCAGCAGG
AGCAACAGCAGAAGAAGCAGCAGTTGTGTGCCTTGTCCACGTCCTCGTAT
TCCTCCACCGCGCATCATGGCGGACCCGAACTCGTCTCCTCTTGTGGCTC
CCCTGTTGGCACCCCTTTTCCTCGTCTGACCTCGCTCCAGCTCTCTAGCA
ACCAGCTTGGTGATGCCGGGGTGGCCTGGCTCTTACGCGCCTTGGCCAAA
GCTAGTGTGAGTTTACGTATTTTGGACCTATCGGATAACTGCCTTGGAGA
CGGGCTAGGGGAAGAAGAGGAGGAAGATGGGAGAGAAGGAGGGAGGGAAG
GAGGGCTGCGGGAGGTATGTCAGGCGTTGGTCGAGACAGAGGCGGGAATG
AGGTTGGAGGAGTTGTGGTTGTCGTACAATCAACTGACGGACGGGGGTTT
GAATGGATTGAGCAGGAAGGTGATTGCGAATCGACGTTTACCGTGCTTGC
AGCGGCTGGAGCTGGAGTCGAACCATGTTGGGAACGACGGAGTGGGGAGC
CTCGCTGCGGCTTTATTGGCTTCCTCCACCCTCCCTTCCTCCTCCTCCTC
TTCCCCCCCTCGATATCACGGTTGTCGACCgtgaatctgtgcaagaactc
tgtgggtgacgcgggcgcacaagccctcgcttactccctcgtgcatgcct
catgcccatccctttctcgtcttgatttaagTGGGAATTTGATCGCGACT
GCTGGTGCTGTTGCGCTAGCGGTGGCATTGGCGTCGGAGCGGACGTCGTT
GAAGGTGCTGAGCTTGGCGTGGAACGACTTGAGGGACGCGGGGATGGTGG
CATTTGCAGAGGAGTTGAATGGGGGGAGGAGGAGGAGGAGGAATGGAGGG
AGGACGAGGAAGGACGAGGATATGAAGAGTGTGGAGGAGGAAGTGGAGGA
GGCAAAGATGGAAGAGGAGGAGGACGAGGGGGGGGAAGACGAGGATCGAC
ATTGGCTGGAGCGGTTGGAGCTGAGCAATAACAGTATAGGGGATACAGGA
GTGCAGGCTTTAGCTGCCGCTCTGCAGTCCGCCCCCCCCCTTGCGAGGTT
AGTGTCGATCGATTTGACAGGAAATGACTTTCACGAGCTGGGTATTGGGG
CCCTTGCGGCGATTGCGGACGGTGGACGGTATTGTCATCGCCGTGAGCAG
CAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGGAAAGGAGCA
GTCGGTGGAGAGGGATAAAAGAGAGGGAAGAGGGAGGAGAAAAGGAAGGG
GAGGAGGGAATGAGCAGCAGCTGCTGGCGTTTCCTGACGTGAGGGTATAT
GATGGCTTGTTGCTGGGGGACTTGCTTGGGTGGCAACCCAGTTCATGGCC
GATGAAGAGGGGCGAGGAAGGGAGGGAGGGAGGGGTGGAGGGAGGCGCGA
CGAAAGCAGGTAGAACAGCAGCAGGAGATGGTGTTGGGAAAGGAGGCGGG
GATGCCCGGCAATTGCTCTTTCGTCGACGGCAATCCCAGCGCATGGCGCG
GCGGGAGCAACAGGCACAGGAGCAGCAGGAACAACAGCTGTGGAGGCTGC
AGCTGGGGTTGGGGGGGGTCTGGGGAGCGGCGTGGGATGTGGTGTGTATG
GCGTTCGGGGGTGGGGGAGGGATACGGGCATAA
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protein sequence of NO20G00830.1

>NO20G00830.1-protein ID=NO20G00830.1-protein|Name=NO20G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=744bp
MAGFAARLRASSTSPPRHHQPQTKSPARRQSVPSTSASTSISPNPRRRLF
SSSHNLTATNPTCWYQDPLPRLPESLFDIVASYLPQRDVLRCRLTAKHHH
AAFPKTLRRLELSFHHAGRVDWPVFGALKSLHIGLGGKGLVGTGEKYSPL
GALFPPTPPALTGPSLVIVPSLFPHLKELNLIGLMLGDARMASLWAGLGR
LEQLEILNLDGNELTDQSLVALAQEIVGEHPQQEQQQKKQQLCALSTSSY
SSTAHHGGPELVSSCGSPVGTPFPRLTSLQLSSNQLGDAGVAWLLRALAK
ASVSLRILDLSDNCLGDGLGEEEEEDGREGGREGGLREVCQALVETEAGM
RLEELWLSYNQLTDGGLNGLSRKVIANRRLPCLQRLELESNHVGNDGVGS
LAAALLASSTLPSSSSSSPPRYHGCRPGNLIATAGAVALAVALASERTSL
KVLSLAWNDLRDAGMVAFAEELNGGRRRRRNGGRTRKDEDMKSVEEEVEE
AKMEEEEDEGGEDEDRHWLERLELSNNSIGDTGVQALAAALQSAPPLARL
VSIDLTGNDFHELGIGALAAIADGGRYCHRREQQEQEQEQEQEQEQGKEQ
SVERDKREGRGRRKGRGGGNEQQLLAFPDVRVYDGLLLGDLLGWQPSSWP
MKRGEEGREGGVEGGATKAGRTAAGDGVGKGGGDARQLLFRRRQSQRMAR
REQQAQEQQEQQLWRLQLGLGGVWGAAWDVVCMAFGGGGGIRA*
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Synonyms
Publications