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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr20 | genome | chr20:278030..280362 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G00830.1 vs.
Match: EWM22138.1 (Leucine-rich repeat, ribonuclease inhibitor subtype [Nannochloropsis gaditana]) HSP 1 Score: 326.2 bits (835), Expect = 2.600e-85 Identity = 248/591 (41.96%), Postives = 316/591 (53.47%), Query Frame = 0
Query: 67 DPLPRLPESLFDIVASYLPQRDVLRCRLTAKHHHAAFPKTLRRLELSFHHAGRVDWPVFGALKSLHIGLGGKGLVGTGEKYSPLGALFPPTPPALTGPSLV-IVP-------SLFPHLKELNLIGLMLGDARMASLWAGLGRLEQLEILNLDGNELTDQSLVALAQEIVGEHPQQEQQQKKQQLCALSTSSYSSTAHHGGPELVSSCGSPVGTPFPRLTSLQLSSNQLGDAGVAWLLRALAKASVSLRILDLSDNCLGDGLGEEEEEDGREGGREGGLREVCQALVETEAGMRLEELWLSYNQLTDGGLNGLSRKVIANRRLPCLQRLELESNHVGNDGVGSLAAALLASSTLPSSSS-----SSPPRYHGCR----------------------PGNLIATAGAVALAVALASERTSLKVLSLAWNDLRDAGMVAFAEELNGGRRRRRNGGRTRKDEDMKSVEEEVEEAKMEEEEDEGGEDEDRHWLERLELSNNSIGDTGVQALAAALQSAPPLARLVSIDLTGNDFHELGIGALAAIADGGRYCHRREQQEQEQE-QEQEQEQGKEQSVERD---KREGRGRRKGRGG 619
DPL LPESL ++AS+LP +DVL CRL K H+ AFPKTLRRL+L F + VDW F L+ LH+G GGK PL LFPP + S V I+P L P L+EL+++GL L D +A LW G+GRL +LE LNLDGN L+D SL A+A+E+ L ++S+SS S ++ SS + PF RL L+LS NQ GVA LL AL A + LR+LDL+DN LG +GE E G G L C+ L EAG R+EELWLSY +TD L + VI +LP L RLELESN +GN GV +LAAAL A + + S +S + Y G R GN +A GA+ALA + ++ TSL+ L+LAWNDL D GMVAFAE + G GG R++E M + LERLELSNNSIGD G+ ALAAAL+ AP LARL +IDLTGNDFH LG+ AL + GGR + +++ + + + D K G+GRRK R G
Sbjct: 135 DPLIGLPESLLTVMASFLPVKDVLCCRLVGKRHYRAFPKTLRRLQLPFPRSDMVDWSAFACLECLHLGPGGKSFSVHNASTHPLTRLFPPRSVRESYFSAVEILPWPFDVGRPLLPRLRELHMVGLGLDDDHLALLWHGIGRLTELECLNLDGNNLSDASLEAMAREVTA-----------FLLPSVSSSSSSPSS--------SSFATTSSGPFSRLRVLKLSQNQFTAQGVARLLTALTGAGIYLRVLDLADNDLG-SVGESRREGEAARGSRGLL---CETLATMEAGARMEELWLSYTGMTDESLEAFASLVIGPGKLPRLARLELESNKIGNAGVEALAAALSAGAPVASPASCLTSLNLSKNYVGNRGVQALGRALEEGRCSRLRRLDVSGNWVAAPGAMALARVMTAQTTSLQCLNLAWNDLGDTGMVAFAEHVCKG------GGGGREEEPMAT-------------------------LERLELSNNSIGDAGMHALAAALRRAPALARLHAIDLTGNDFHALGLMALEKVMKGGRAGEEGSEPGRDRHCLDISMGRYGAHPPQPDVCMKTRGQGRRKRRAG 671
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO20G00830.1 ID=NO20G00830.1|Name=NO20G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2232bp
ATGGCGGGGTTTGCGGCCCGTCTAAGGGCGTCATCGACCTCCCCTCCAAG
GCATCATCAGCCTCAAACCAAATCACCTGCCCGCCGTCAAAGCGTCCCCT
CTACCTCCGCCTCCACCTCCATCTCCCCGAACCCCCGTCGCCGCCTCTTC
TCCAGCAGTCACAATCTCACGGCGACCAACCCGACCTGCTGGTACCAAGA
CCCTCTGCCCCGCCTTCCCGAGTCTCTGTTCGATATTGTCGCCTCCTACT
TGCCACAACGTGACGTTCTCCGCTGCCGTCTCACCGCCAAACACCACCAT
GCTGCTTTCCCAAAAACCCTCCGACGGCTTGAGCTCTCGTTTCACCACGC
TGGACGGGTAGACTGGCCCGTCTTTGGGGCCTTAAAGAGCCTCCATATTG
GGCTTGGCGGAAAGGGATTGGTGGGAACCGGGGAGAAATACAGCCCGTTA
GGAGCGCTCTTCCCCCCGACCCCTCCTGCCCTTACAGGACCCTCGTTGGT
GATAGTGCCTTCTCTTTTCCCGCATTTGAAGGAACTGAATTTGATTGGGC
TTATGTTGGGAGATGCACGCATGGCATCTTTGTGGGCCGGGCTGGGAAGA
TTAGAACAATTGGAAATTTTAAATTTGGACGGTAACGAATTGACGGACCA
AAGCCTAGTGGCCTTGGCGCAGGAGATAGTAGGGGAGCACCCGCAGCAGG
AGCAACAGCAGAAGAAGCAGCAGTTGTGTGCCTTGTCCACGTCCTCGTAT
TCCTCCACCGCGCATCATGGCGGACCCGAACTCGTCTCCTCTTGTGGCTC
CCCTGTTGGCACCCCTTTTCCTCGTCTGACCTCGCTCCAGCTCTCTAGCA
ACCAGCTTGGTGATGCCGGGGTGGCCTGGCTCTTACGCGCCTTGGCCAAA
GCTAGTGTGAGTTTACGTATTTTGGACCTATCGGATAACTGCCTTGGAGA
CGGGCTAGGGGAAGAAGAGGAGGAAGATGGGAGAGAAGGAGGGAGGGAAG
GAGGGCTGCGGGAGGTATGTCAGGCGTTGGTCGAGACAGAGGCGGGAATG
AGGTTGGAGGAGTTGTGGTTGTCGTACAATCAACTGACGGACGGGGGTTT
GAATGGATTGAGCAGGAAGGTGATTGCGAATCGACGTTTACCGTGCTTGC
AGCGGCTGGAGCTGGAGTCGAACCATGTTGGGAACGACGGAGTGGGGAGC
CTCGCTGCGGCTTTATTGGCTTCCTCCACCCTCCCTTCCTCCTCCTCCTC
TTCCCCCCCTCGATATCACGGTTGTCGACCTGGGAATTTGATCGCGACTG
CTGGTGCTGTTGCGCTAGCGGTGGCATTGGCGTCGGAGCGGACGTCGTTG
AAGGTGCTGAGCTTGGCGTGGAACGACTTGAGGGACGCGGGGATGGTGGC
ATTTGCAGAGGAGTTGAATGGGGGGAGGAGGAGGAGGAGGAATGGAGGGA
GGACGAGGAAGGACGAGGATATGAAGAGTGTGGAGGAGGAAGTGGAGGAG
GCAAAGATGGAAGAGGAGGAGGACGAGGGGGGGGAAGACGAGGATCGACA
TTGGCTGGAGCGGTTGGAGCTGAGCAATAACAGTATAGGGGATACAGGAG
TGCAGGCTTTAGCTGCCGCTCTGCAGTCCGCCCCCCCCCTTGCGAGGTTA
GTGTCGATCGATTTGACAGGAAATGACTTTCACGAGCTGGGTATTGGGGC
CCTTGCGGCGATTGCGGACGGTGGACGGTATTGTCATCGCCGTGAGCAGC
AGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGGAAAGGAGCAG
TCGGTGGAGAGGGATAAAAGAGAGGGAAGAGGGAGGAGAAAAGGAAGGGG
AGGAGGGAATGAGCAGCAGCTGCTGGCGTTTCCTGACGTGAGGGTATATG
ATGGCTTGTTGCTGGGGGACTTGCTTGGGTGGCAACCCAGTTCATGGCCG
ATGAAGAGGGGCGAGGAAGGGAGGGAGGGAGGGGTGGAGGGAGGCGCGAC
GAAAGCAGGTAGAACAGCAGCAGGAGATGGTGTTGGGAAAGGAGGCGGGG
ATGCCCGGCAATTGCTCTTTCGTCGACGGCAATCCCAGCGCATGGCGCGG
CGGGAGCAACAGGCACAGGAGCAGCAGGAACAACAGCTGTGGAGGCTGCA
GCTGGGGTTGGGGGGGGTCTGGGGAGCGGCGTGGGATGTGGTGTGTATGG
CGTTCGGGGGTGGGGGAGGGATACGGGCATAA back to topprotein sequence of NO20G00830.1 >NO20G00830.1-protein ID=NO20G00830.1-protein|Name=NO20G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=744bp
MAGFAARLRASSTSPPRHHQPQTKSPARRQSVPSTSASTSISPNPRRRLF
SSSHNLTATNPTCWYQDPLPRLPESLFDIVASYLPQRDVLRCRLTAKHHH
AAFPKTLRRLELSFHHAGRVDWPVFGALKSLHIGLGGKGLVGTGEKYSPL
GALFPPTPPALTGPSLVIVPSLFPHLKELNLIGLMLGDARMASLWAGLGR
LEQLEILNLDGNELTDQSLVALAQEIVGEHPQQEQQQKKQQLCALSTSSY
SSTAHHGGPELVSSCGSPVGTPFPRLTSLQLSSNQLGDAGVAWLLRALAK
ASVSLRILDLSDNCLGDGLGEEEEEDGREGGREGGLREVCQALVETEAGM
RLEELWLSYNQLTDGGLNGLSRKVIANRRLPCLQRLELESNHVGNDGVGS
LAAALLASSTLPSSSSSSPPRYHGCRPGNLIATAGAVALAVALASERTSL
KVLSLAWNDLRDAGMVAFAEELNGGRRRRRNGGRTRKDEDMKSVEEEVEE
AKMEEEEDEGGEDEDRHWLERLELSNNSIGDTGVQALAAALQSAPPLARL
VSIDLTGNDFHELGIGALAAIADGGRYCHRREQQEQEQEQEQEQEQGKEQ
SVERDKREGRGRRKGRGGGNEQQLLAFPDVRVYDGLLLGDLLGWQPSSWP
MKRGEEGREGGVEGGATKAGRTAAGDGVGKGGGDARQLLFRRRQSQRMAR
REQQAQEQQEQQLWRLQLGLGGVWGAAWDVVCMAFGGGGGIRA* back to topmRNA from alignment at chr20:278030..280362- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO20G00830.1 ID=NO20G00830.1|Name=NO20G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2333bp|location=Sequence derived from alignment at chr20:278030..280362- (Nannochloropsis oceanica)
ATGGCGGGGTTTGCGGCCCGTCTAAGGGCGTCATCGACCTCCCCTCCAAG
GCATCATCAGCCTCAAACCAAATCACCTGCCCGCCGTCAAAGCGTCCCCT
CTACCTCCGCCTCCACCTCCATCTCCCCGAACCCCCGTCGCCGCCTCTTC
TCCAGCAGTCACAATCTCACGGCGACCAACCCGACCTGCTGGTACCAAGA
CCCTCTGCCCCGCCTTCCCGAGTCTCTGTTCGATATTGTCGCCTCCTACT
TGCCACAACGTGACGTTCTCCGCTGCCGTCTCACCGCCAAACACCACCAT
GCTGCTTTCCCAAAAACCCTCCGACGGCTTGAGCTCTCGTTTCACCACGC
TGGACGGGTAGACTGGCCCGTCTTTGGGGCCTTAAAGAGCCTCCATATTG
GGCTTGGCGGAAAGGGATTGGTGGGAACCGGGGAGAAATACAGCCCGTTA
GGAGCGCTCTTCCCCCCGACCCCTCCTGCCCTTACAGGACCCTCGTTGGT
GATAGTGCCTTCTCTTTTCCCGCATTTGAAGGAACTGAATTTGATTGGGC
TTATGTTGGGAGATGCACGCATGGCATCTTTGTGGGCCGGGCTGGGAAGA
TTAGAACAATTGGAAATTTTAAATTTGGACGGTAACGAATTGACGGACCA
AAGCCTAGTGGCCTTGGCGCAGGAGATAGTAGGGGAGCACCCGCAGCAGG
AGCAACAGCAGAAGAAGCAGCAGTTGTGTGCCTTGTCCACGTCCTCGTAT
TCCTCCACCGCGCATCATGGCGGACCCGAACTCGTCTCCTCTTGTGGCTC
CCCTGTTGGCACCCCTTTTCCTCGTCTGACCTCGCTCCAGCTCTCTAGCA
ACCAGCTTGGTGATGCCGGGGTGGCCTGGCTCTTACGCGCCTTGGCCAAA
GCTAGTGTGAGTTTACGTATTTTGGACCTATCGGATAACTGCCTTGGAGA
CGGGCTAGGGGAAGAAGAGGAGGAAGATGGGAGAGAAGGAGGGAGGGAAG
GAGGGCTGCGGGAGGTATGTCAGGCGTTGGTCGAGACAGAGGCGGGAATG
AGGTTGGAGGAGTTGTGGTTGTCGTACAATCAACTGACGGACGGGGGTTT
GAATGGATTGAGCAGGAAGGTGATTGCGAATCGACGTTTACCGTGCTTGC
AGCGGCTGGAGCTGGAGTCGAACCATGTTGGGAACGACGGAGTGGGGAGC
CTCGCTGCGGCTTTATTGGCTTCCTCCACCCTCCCTTCCTCCTCCTCCTC
TTCCCCCCCTCGATATCACGGTTGTCGACCGTGAATCTGTGCAAGAACTC
TGTGGGTGACGCGGGCGCACAAGCCCTCGCTTACTCCCTCGTGCATGCCT
CATGCCCATCCCTTTCTCGTCTTGATTTAAGTGGGAATTTGATCGCGACT
GCTGGTGCTGTTGCGCTAGCGGTGGCATTGGCGTCGGAGCGGACGTCGTT
GAAGGTGCTGAGCTTGGCGTGGAACGACTTGAGGGACGCGGGGATGGTGG
CATTTGCAGAGGAGTTGAATGGGGGGAGGAGGAGGAGGAGGAATGGAGGG
AGGACGAGGAAGGACGAGGATATGAAGAGTGTGGAGGAGGAAGTGGAGGA
GGCAAAGATGGAAGAGGAGGAGGACGAGGGGGGGGAAGACGAGGATCGAC
ATTGGCTGGAGCGGTTGGAGCTGAGCAATAACAGTATAGGGGATACAGGA
GTGCAGGCTTTAGCTGCCGCTCTGCAGTCCGCCCCCCCCCTTGCGAGGTT
AGTGTCGATCGATTTGACAGGAAATGACTTTCACGAGCTGGGTATTGGGG
CCCTTGCGGCGATTGCGGACGGTGGACGGTATTGTCATCGCCGTGAGCAG
CAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGGAAAGGAGCA
GTCGGTGGAGAGGGATAAAAGAGAGGGAAGAGGGAGGAGAAAAGGAAGGG
GAGGAGGGAATGAGCAGCAGCTGCTGGCGTTTCCTGACGTGAGGGTATAT
GATGGCTTGTTGCTGGGGGACTTGCTTGGGTGGCAACCCAGTTCATGGCC
GATGAAGAGGGGCGAGGAAGGGAGGGAGGGAGGGGTGGAGGGAGGCGCGA
CGAAAGCAGGTAGAACAGCAGCAGGAGATGGTGTTGGGAAAGGAGGCGGG
GATGCCCGGCAATTGCTCTTTCGTCGACGGCAATCCCAGCGCATGGCGCG
GCGGGAGCAACAGGCACAGGAGCAGCAGGAACAACAGCTGTGGAGGCTGC
AGCTGGGGTTGGGGGGGGTCTGGGGAGCGGCGTGGGATGTGGTGTGTATG
GCGTTCGGGGGTGGGGGAGGGATACGGGCATAA back to topCoding sequence (CDS) from alignment at chr20:278030..280362- >NO20G00830.1 ID=NO20G00830.1|Name=NO20G00830.1|organism=Nannochloropsis oceanica|type=CDS|length=2232bp|location=Sequence derived from alignment at chr20:278030..280362- (Nannochloropsis oceanica)
ATGGCGGGGTTTGCGGCCCGTCTAAGGGCGTCATCGACCTCCCCTCCAAG
GCATCATCAGCCTCAAACCAAATCACCTGCCCGCCGTCAAAGCGTCCCCT
CTACCTCCGCCTCCACCTCCATCTCCCCGAACCCCCGTCGCCGCCTCTTC
TCCAGCAGTCACAATCTCACGGCGACCAACCCGACCTGCTGGTACCAAGA
CCCTCTGCCCCGCCTTCCCGAGTCTCTGTTCGATATTGTCGCCTCCTACT
TGCCACAACGTGACGTTCTCCGCTGCCGTCTCACCGCCAAACACCACCAT
GCTGCTTTCCCAAAAACCCTCCGACGGCTTGAGCTCTCGTTTCACCACGC
TGGACGGGTAGACTGGCCCGTCTTTGGGGCCTTAAAGAGCCTCCATATTG
GGCTTGGCGGAAAGGGATTGGTGGGAACCGGGGAGAAATACAGCCCGTTA
GGAGCGCTCTTCCCCCCGACCCCTCCTGCCCTTACAGGACCCTCGTTGGT
GATAGTGCCTTCTCTTTTCCCGCATTTGAAGGAACTGAATTTGATTGGGC
TTATGTTGGGAGATGCACGCATGGCATCTTTGTGGGCCGGGCTGGGAAGA
TTAGAACAATTGGAAATTTTAAATTTGGACGGTAACGAATTGACGGACCA
AAGCCTAGTGGCCTTGGCGCAGGAGATAGTAGGGGAGCACCCGCAGCAGG
AGCAACAGCAGAAGAAGCAGCAGTTGTGTGCCTTGTCCACGTCCTCGTAT
TCCTCCACCGCGCATCATGGCGGACCCGAACTCGTCTCCTCTTGTGGCTC
CCCTGTTGGCACCCCTTTTCCTCGTCTGACCTCGCTCCAGCTCTCTAGCA
ACCAGCTTGGTGATGCCGGGGTGGCCTGGCTCTTACGCGCCTTGGCCAAA
GCTAGTGTGAGTTTACGTATTTTGGACCTATCGGATAACTGCCTTGGAGA
CGGGCTAGGGGAAGAAGAGGAGGAAGATGGGAGAGAAGGAGGGAGGGAAG
GAGGGCTGCGGGAGGTATGTCAGGCGTTGGTCGAGACAGAGGCGGGAATG
AGGTTGGAGGAGTTGTGGTTGTCGTACAATCAACTGACGGACGGGGGTTT
GAATGGATTGAGCAGGAAGGTGATTGCGAATCGACGTTTACCGTGCTTGC
AGCGGCTGGAGCTGGAGTCGAACCATGTTGGGAACGACGGAGTGGGGAGC
CTCGCTGCGGCTTTATTGGCTTCCTCCACCCTCCCTTCCTCCTCCTCCTC
TTCCCCCCCTCGATATCACGGTTGTCGACCTGGGAATTTGATCGCGACTG
CTGGTGCTGTTGCGCTAGCGGTGGCATTGGCGTCGGAGCGGACGTCGTTG
AAGGTGCTGAGCTTGGCGTGGAACGACTTGAGGGACGCGGGGATGGTGGC
ATTTGCAGAGGAGTTGAATGGGGGGAGGAGGAGGAGGAGGAATGGAGGGA
GGACGAGGAAGGACGAGGATATGAAGAGTGTGGAGGAGGAAGTGGAGGAG
GCAAAGATGGAAGAGGAGGAGGACGAGGGGGGGGAAGACGAGGATCGACA
TTGGCTGGAGCGGTTGGAGCTGAGCAATAACAGTATAGGGGATACAGGAG
TGCAGGCTTTAGCTGCCGCTCTGCAGTCCGCCCCCCCCCTTGCGAGGTTA
GTGTCGATCGATTTGACAGGAAATGACTTTCACGAGCTGGGTATTGGGGC
CCTTGCGGCGATTGCGGACGGTGGACGGTATTGTCATCGCCGTGAGCAGC
AGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGGAAAGGAGCAG
TCGGTGGAGAGGGATAAAAGAGAGGGAAGAGGGAGGAGAAAAGGAAGGGG
AGGAGGGAATGAGCAGCAGCTGCTGGCGTTTCCTGACGTGAGGGTATATG
ATGGCTTGTTGCTGGGGGACTTGCTTGGGTGGCAACCCAGTTCATGGCCG
ATGAAGAGGGGCGAGGAAGGGAGGGAGGGAGGGGTGGAGGGAGGCGCGAC
GAAAGCAGGTAGAACAGCAGCAGGAGATGGTGTTGGGAAAGGAGGCGGGG
ATGCCCGGCAATTGCTCTTTCGTCGACGGCAATCCCAGCGCATGGCGCGG
CGGGAGCAACAGGCACAGGAGCAGCAGGAACAACAGCTGTGGAGGCTGCA
GCTGGGGTTGGGGGGGGTCTGGGGAGCGGCGTGGGATGTGGTGTGTATGG
CGTTCGGGGGTGGGGGAGGGATACGGGCATAA back to top
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