NO20G00810, NO20G00810 (gene) Nannochloropsis oceanica

Overview
NameNO20G00810
Unique NameNO20G00810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length339
Alignment locationchr20:274658..274996 -

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Properties
Property NameValue
DescriptionTransducin/WD40 repeat-like superfamily protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:274658..274996 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
Homology
BLAST of NO20G00810 vs. NCBI_GenBank
Match: EWM22147.1 (protein tssc1 [Nannochloropsis gaditana])

HSP 1 Score: 185.3 bits (469), Expect = 1.100e-43
Identity = 83/109 (76.15%), Postives = 97/109 (88.99%), Query Frame = 0
Query:    4 GPVKQLAGHTHWVTTVKYNPCHDQLLLSGGTDSMVNLWRVSSISSAPLLDLEDGHDAPDLRVKKFEDHEESVYSVAWSSQDPFVFSSLSYDGRVAINAVPPSEKYKILL 113
            GPVK+LAGH HWV TVKYNPCHDQLLLS GTD++VNLWR+SSISSAPL + E+G +APD+RV   +DHEESVY+V WS+ DPF+F+SLSYDGRV +NAVPPSEKYKILL
Sbjct:  321 GPVKRLAGHAHWVWTVKYNPCHDQLLLSAGTDNLVNLWRISSISSAPLWEPEEGPEAPDVRVLAIQDHEESVYAVDWSACDPFLFASLSYDGRVVVNAVPPSEKYKILL 429          
BLAST of NO20G00810 vs. NCBI_GenBank
Match: XP_008607164.1 (hypothetical protein SDRG_03311 [Saprolegnia diclina VS20] >EQC39103.1 hypothetical protein SDRG_03311 [Saprolegnia diclina VS20])

HSP 1 Score: 145.6 bits (366), Expect = 9.400e-32
Identity = 67/109 (61.47%), Postives = 86/109 (78.90%), Query Frame = 0
Query:    9 LAGHTHWVTTVKYNPCHDQLLLSGGTDSMVNLWRVSSISSAPLLDLED-----GHDAPDLRVKKFEDHEESVYSVAWSSQDPFVFSSLSYDGRVAINAVPPSEKYKILL 113
            L+GH+HWV  VKYN  HDQL+LS  +DS+VNLWRVSSISSAPLL+++D     G D  D R+K +E+HE+SVYSVAW S D ++F+S+SY GRV +N VP +EKY+ILL
Sbjct:  255 LSGHSHWVWCVKYNRFHDQLVLSSSSDSLVNLWRVSSISSAPLLEMDDDDSEQGIDVGDARIKSYEEHEDSVYSVAWGSADSWLFASVSYSGRVVLNQVPSTEKYRILL 363          
BLAST of NO20G00810 vs. NCBI_GenBank
Match: CBJ48442.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 143.3 bits (360), Expect = 4.700e-31
Identity = 71/135 (52.59%), Postives = 89/135 (65.93%), Query Frame = 0
Query:    3 HGPVKQLAGHTHWVTTVKYNPCHDQLLLSGGTDSMVNLWRVSSISSAPLLDLEDGH-------------------------DAPDLRVKKFEDHEESVYSVAWSSQDPFVFSSLSYDGRVAINAVPPSEKYKILL 113
            + PVK + GH HWV TVKYN  HDQLL+SG +D MV+LWRVSS+SSAPLL+ ED                           +A D+RV+ F++HEESVYS+AWS+ D +V +SLSYDG V +N VP +EKYKILL
Sbjct:  294 NAPVKTIVGHDHWVNTVKYNRFHDQLLVSGSSDCMVHLWRVSSVSSAPLLEPEDDDAGGLDXXXXXXXXXXXXXXXXXXXGEAADIRVRTFDEHEESVYSLAWSASDAWVMASLSYDGLVVLNHVPSTEKYKILL 428          
BLAST of NO20G00810 vs. NCBI_GenBank
Match: OQR96716.1 (hypothetical protein ACHHYP_13756 [Achlya hypogyna])

HSP 1 Score: 136.7 bits (343), Expect = 4.400e-29
Identity = 67/123 (54.47%), Postives = 86/123 (69.92%), Query Frame = 0
Query:    9 LAGHTHWVTT--------------VKYNPCHDQLLLSGGTDSMVNLWRVSSISSAPLLDLED-----GHDAPDLRVKKFEDHEESVYSVAWSSQDPFVFSSLSYDGRVAINAVPPSEKYKILL 113
            LAGH+HW T               VKYN  HDQL+LS  +DS+VNLWRVSSISSAPLL+++D     G D  D ++K +E+HE+SVYSVAW S D ++F+S+SY GRV +N VP +EKY+ILL
Sbjct:  253 LAGHSHWYTASRESCLDRLHRVWCVKYNRFHDQLVLSSSSDSVVNLWRVSSISSAPLLEMDDSESEAGVDVGDAKIKSYEEHEDSVYSVAWGSADSWLFASVSYSGRVVLNQVPSTEKYRILL 375          
BLAST of NO20G00810 vs. NCBI_GenBank
Match: XP_009844703.1 (hypothetical protein H257_17567 [Aphanomyces astaci] >ETV65840.1 hypothetical protein H257_17567 [Aphanomyces astaci])

HSP 1 Score: 132.5 bits (332), Expect = 8.200e-28
Identity = 66/108 (61.11%), Postives = 79/108 (73.15%), Query Frame = 0
Query:    9 LAGHTHWVTTVKYNPCHDQLLLSGGTDSMVNLWRVSSISSAPLLDLE---DGHDAPDLRVKKFE-DHEESVYSVAWSSQDPFVFSSLSYDGRVAINAVPPSEKYKILL 113
            L  H+HWV  VKYN  HDQL+LS  +DS VNLWRVSSISSAPLLD      G D  D ++   + DHE+SVY+VAW SQD +V+ SLSYDGRV +N VP +EKY+ILL
Sbjct:  269 LPSHSHWVWCVKYNRFHDQLVLSSSSDSSVNLWRVSSISSAPLLDESTDAGGIDIGDAKISTHDGDHEDSVYAVAWGSQDSWVYVSLSYDGRVVLNTVPSTEKYRILL 376          
BLAST of NO20G00810 vs. NCBI_GenBank
Match: XP_009033968.1 (hypothetical protein AURANDRAFT_20923, partial [Aureococcus anophagefferens] >EGB11620.1 hypothetical protein AURANDRAFT_20923, partial [Aureococcus anophagefferens])

HSP 1 Score: 132.1 bits (331), Expect = 1.100e-27
Identity = 68/127 (53.54%), Postives = 87/127 (68.50%), Query Frame = 0
Query:    5 PVKQLAGHTHWVTTVKYNPCHDQLLLSGGTDSMVNLWRVSSISSAPLLDLE------DG-------------HDAPDLRVKKFEDHEESVYSVAWSSQDPFVFSSLSYDGRVAINAVPPSEKYKILL 113
            P+K L GH  W   ++YN  HDQLL SGG+D +VNLWRVSSISSAPLL+L+      DG              DAPD++VK ++ H+++V +VAWSS D +VF+SLS+DGRV +N VP  EKYKILL
Sbjct:   83 PLKILRGHDGWCGALEYNKYHDQLLASGGSDKLVNLWRVSSISSAPLLELDLDDAKGDGASSAVTSSAGTAAPDAPDVKVKDYDLHDDAVVAVAWSSCDAWVFASLSFDGRVLLNHVPSPEKYKILL 209          
BLAST of NO20G00810 vs. NCBI_GenBank
Match: CCA25586.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 132.1 bits (331), Expect = 1.100e-27
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 0
Query:    9 LAGHTHWVTTVKYNPCHDQLLLSGGTDSMVNLWRVSSISSAPLLDLED---------GHDAPDLRVKKFEDHEESVYSVAWSSQDPFVFSSLSYDGRVAINAVPPSEKYKILL 113
            L+ H+HWV  VKYN CHDQLLL+  +D+   LWR+ S+SSAPL+DLE+         G    D +V ++EDH ESVYSV W++ D + F+SLSYDG + +NAVP SEKYKILL
Sbjct:  260 LSAHSHWVLCVKYNRCHDQLLLTSSSDASYALWRIPSVSSAPLIDLEEQDIMSESASGAYVADTKVNQYEDHCESVYSVVWAASDSWRFASLSYDGSLTMNAVPSSEKYKILL 372          
BLAST of NO20G00810 vs. NCBI_GenBank
Match: XP_002176819.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC51282.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 122.5 bits (306), Expect = 8.500e-25
Identity = 55/108 (50.93%), Postives = 77/108 (71.30%), Query Frame = 0
Query:   11 GHTHWVTTVKYNPCHDQLLLSGGTDSMVNLWRVSSISSAPLLDLEDGHD------APDLRVKKFEDHEESVYSVAWSSQDPFVFSSLSYDGRVAINAVPPSEKYKILL 113
            GH+HWV+ +KYNP HDQL+L+ GTDS+ NLWR+S+ISSAPLL + D  D      A ++RV + E H E+VY  +W + D ++++ + YDG+  +N VP  EKYKILL
Sbjct:   84 GHSHWVSQIKYNPFHDQLVLTTGTDSISNLWRISTISSAPLLTMHDDDDKLSETSAANVRVSRHE-HSEAVYGASWGAADAWIYACVGYDGKFVLNHVPSKEKYKILL 190          
BLAST of NO20G00810 vs. NCBI_GenBank
Match: GBG32745.1 (Nuclear distribution protein PAC1-1 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 121.7 bits (304), Expect = 1.500e-24
Identity = 64/141 (45.39%), Postives = 82/141 (58.16%), Query Frame = 0
Query:    5 PVKQLAGHTHWVTTVKYNPCHDQLLLSGGTDSMVNLWRVSSISSAPLLDLE---------------------------------DGHDAPDLRVKKFEDHEESVYSVAWSSQDPFVFSSLSYDGRVAINAVPPSEKYKILL 113
            P+K +  H HWV  V+YN  HDQL+LS GTDS V+LWR+SSISSAPLL L+                                    +  D  VK +EDH +SVYSVAWS+ + +VF+SLS DG++ +N VP +EKYKILL
Sbjct:  293 PLKVILAHDHWVGAVRYNRFHDQLVLSAGTDSHVSLWRLSSISSAPLLGLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSETADGLVKSYEDHADSVYSVAWSAAEAWVFASLSIDGKLVVNHVPSAEKYKILL 433          
BLAST of NO20G00810 vs. NCBI_GenBank
Match: OQV18668.1 (Protein TSSC1 [Hypsibius dujardini])

HSP 1 Score: 120.9 bits (302), Expect = 2.500e-24
Identity = 58/118 (49.15%), Postives = 80/118 (67.80%), Query Frame = 0
Query:    4 GPVKQLAGHTHWVTTVKYNPCHDQLLLSGGTDSMVNLWRVSSISSAPLL---------DLEDGHDAPDLRVKKFEDHEESVYSVAWSSQDPFVFSSLSYDGRVAINAVPPSEKYKILL 113
            GP++ LA H+HWV  VKYNP HDQLLL+  +DS V L  ++S+SS P+          +L+   +  D  +  +E+HE+SVY++ WSS DP+ F+SLSYDGR+ IN VP S KY+ILL
Sbjct:  265 GPLRVLADHSHWVWCVKYNPFHDQLLLTSSSDSHVILTSIASLSSEPITRDAEDEPSSELDSKENLVDGIINTYEEHEDSVYALDWSSADPWTFASLSYDGRLVINRVPRSVKYRILL 382          
The following BLAST results are available for this feature:
BLAST of NO20G00810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22147.11.100e-4376.15protein tssc1 [Nannochloropsis gaditana][more]
XP_008607164.19.400e-3261.47hypothetical protein SDRG_03311 [Saprolegnia dicli... [more]
CBJ48442.14.700e-3152.59conserved unknown protein [Ectocarpus siliculosus][more]
OQR96716.14.400e-2954.47hypothetical protein ACHHYP_13756 [Achlya hypogyna... [more]
XP_009844703.18.200e-2861.11hypothetical protein H257_17567 [Aphanomyces astac... [more]
XP_009033968.11.100e-2753.54hypothetical protein AURANDRAFT_20923, partial [Au... [more]
CCA25586.11.100e-2754.87conserved hypothetical protein [Albugo laibachii N... [more]
XP_002176819.18.500e-2550.93predicted protein, partial [Phaeodactylum tricornu... [more]
GBG32745.11.500e-2445.39Nuclear distribution protein PAC1-1 [Aurantiochytr... [more]
OQV18668.12.500e-2449.15Protein TSSC1 [Hypsibius dujardini][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002611NSK002611Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00810.1NO20G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594494gene_6294Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100064g7gene8293Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00810.1NO20G00810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00810 ID=NO20G00810|Name=NO20G00810|organism=Nannochloropsis oceanica|type=gene|length=339bp
ATGACCCACGGGCCTGTGAAGCAGCTGGCGGGGCACACGCACTGGGTGAC
AACCGTTAAATACAATCCGTGCCACGACCAACTGCTCTTAAGTGGGGGGA
CGGACAGCATGGTTAATTTGTGGAGGGTGTCTTCGATTAGCTCGGCTCCG
TTGTTGGACTTGGAGGATGGTCATGATGCCCCCGACCTCCGGGTGAAGAA
GTTCGAGGACCATGAGGAGAGTGTGTACAGCGTGGCGTGGTCGAGTCAAG
ACCCCTTTGTCTTCTCGAGCCTGTCATACGATGGTCGGGTGGCTATCAAT
GCAGTGCCGCCCTCGGAGAAGTACAAAATCTTGCTGTAG
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protein sequence of NO20G00810.1

>NO20G00810.1-protein ID=NO20G00810.1-protein|Name=NO20G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MTHGPVKQLAGHTHWVTTVKYNPCHDQLLLSGGTDSMVNLWRVSSISSAP
LLDLEDGHDAPDLRVKKFEDHEESVYSVAWSSQDPFVFSSLSYDGRVAIN
AVPPSEKYKILL*
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Synonyms
Publications