NO20G00810.1, NO20G00810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00810.1
Unique NameNO20G00810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length339
Alignment locationchr20:274658..274996 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:274658..274996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G00810.1 vs.
Match: EWM22147.1 (protein tssc1 [Nannochloropsis gaditana])

HSP 1 Score: 185.3 bits (469), Expect = 1.100e-43
Identity = 83/109 (76.15%), Postives = 97/109 (88.99%), Query Frame = 0 
Query:    4 GPVKQLAGHTHWVTTVKYNPCHDQLLLSGGTDSMVNLWRVSSISSAPLLDLEDGHDAPDLRVKKFEDHEESVYSVAWSSQDPFVFSSLSYDGRVAINAVPPSEKYKILL 113
            GPVK+LAGH HWV TVKYNPCHDQLLLS GTD++VNLWR+SSISSAPL + E+G +APD+RV   +DHEESVY+V WS+ DPF+F+SLSYDGRV +NAVPPSEKYKILL
Sbjct:  321 GPVKRLAGHAHWVWTVKYNPCHDQLLLSAGTDNLVNLWRISSISSAPLWEPEEGPEAPDVRVLAIQDHEESVYAVDWSACDPFLFASLSYDGRVVVNAVPPSEKYKILL 429
The following BLAST results are available for this feature:
BLAST of NO20G00810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22147.11.100e-4376.15protein tssc1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00810NO20G00810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00810.1NO20G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00810.1.cds1NO20G00810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00810.1 ID=NO20G00810.1|Name=NO20G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=339bp
ATGACCCACGGGCCTGTGAAGCAGCTGGCGGGGCACACGCACTGGGTGAC
AACCGTTAAATACAATCCGTGCCACGACCAACTGCTCTTAAGTGGGGGGA
CGGACAGCATGGTTAATTTGTGGAGGGTGTCTTCGATTAGCTCGGCTCCG
TTGTTGGACTTGGAGGATGGTCATGATGCCCCCGACCTCCGGGTGAAGAA
GTTCGAGGACCATGAGGAGAGTGTGTACAGCGTGGCGTGGTCGAGTCAAG
ACCCCTTTGTCTTCTCGAGCCTGTCATACGATGGTCGGGTGGCTATCAAT
GCAGTGCCGCCCTCGGAGAAGTACAAAATCTTGCTGTAG
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protein sequence of NO20G00810.1

>NO20G00810.1-protein ID=NO20G00810.1-protein|Name=NO20G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MTHGPVKQLAGHTHWVTTVKYNPCHDQLLLSGGTDSMVNLWRVSSISSAP
LLDLEDGHDAPDLRVKKFEDHEESVYSVAWSSQDPFVFSSLSYDGRVAIN
AVPPSEKYKILL*
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mRNA from alignment at chr20:274658..274996-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00810.1 ID=NO20G00810.1|Name=NO20G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=339bp|location=Sequence derived from alignment at chr20:274658..274996- (Nannochloropsis oceanica)
ATGACCCACGGGCCTGTGAAGCAGCTGGCGGGGCACACGCACTGGGTGAC
AACCGTTAAATACAATCCGTGCCACGACCAACTGCTCTTAAGTGGGGGGA
CGGACAGCATGGTTAATTTGTGGAGGGTGTCTTCGATTAGCTCGGCTCCG
TTGTTGGACTTGGAGGATGGTCATGATGCCCCCGACCTCCGGGTGAAGAA
GTTCGAGGACCATGAGGAGAGTGTGTACAGCGTGGCGTGGTCGAGTCAAG
ACCCCTTTGTCTTCTCGAGCCTGTCATACGATGGTCGGGTGGCTATCAAT
GCAGTGCCGCCCTCGGAGAAGTACAAAATCTTGCTGTAG
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Coding sequence (CDS) from alignment at chr20:274658..274996-

>NO20G00810.1 ID=NO20G00810.1|Name=NO20G00810.1|organism=Nannochloropsis oceanica|type=CDS|length=339bp|location=Sequence derived from alignment at chr20:274658..274996- (Nannochloropsis oceanica)
ATGACCCACGGGCCTGTGAAGCAGCTGGCGGGGCACACGCACTGGGTGAC
AACCGTTAAATACAATCCGTGCCACGACCAACTGCTCTTAAGTGGGGGGA
CGGACAGCATGGTTAATTTGTGGAGGGTGTCTTCGATTAGCTCGGCTCCG
TTGTTGGACTTGGAGGATGGTCATGATGCCCCCGACCTCCGGGTGAAGAA
GTTCGAGGACCATGAGGAGAGTGTGTACAGCGTGGCGTGGTCGAGTCAAG
ACCCCTTTGTCTTCTCGAGCCTGTCATACGATGGTCGGGTGGCTATCAAT
GCAGTGCCGCCCTCGGAGAAGTACAAAATCTTGCTGTAG
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Synonyms
Publications