NO20G00610, NO20G00610 (gene) Nannochloropsis oceanica

Overview
NameNO20G00610
Unique NameNO20G00610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2101
Alignment locationchr20:207527..209627 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:207527..209627 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO20G00610 vs. NCBI_GenBank
Match: EWM22172.1 (hypothetical protein Naga_100153g6 [Nannochloropsis gaditana])

HSP 1 Score: 190.3 bits (482), Expect = 1.100e-44
Identity = 100/138 (72.46%), Postives = 114/138 (82.61%), Query Frame = 0 
Query:   99 PTLEALLTVPLPFIARHTHNKKEAEALLQVSLIAARLDSLLDCLRTVADQAARAHGHAARLHSLVPTDVRLNSLLPLLKELELQRRHDLAAYQEEVHECTVALERHKELLAWSACTHSSTAEQVGEMMPHLADAARRM 237
            P LEALLTVP  FIA++THNKKEAEAL+Q+SL+A RLDSLLD LR  AD AARA   ++RL SL   D R+ +LLPLL +L+LQRRHDL AYQEEV +CT+ALERHKELL WSA THSSTAEQVGEMMP LADAA +M
Sbjct:   19 PGLEALLTVPFSFIAKYTHNKKEAEALVQISLLAVRLDSLLDSLRVAADHAARARDSSSRLLSLCKEDPRVTALLPLLDQLQLQRRHDLTAYQEEVRQCTLALERHKELLGWSAGTHSSTAEQVGEMMPVLADAAMKM 156
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BLAST of NO20G00610 vs. NCBI_GenBank
Match: XP_005855039.1 (hypothetical protein NGA_0396700 [Nannochloropsis gaditana CCMP526] >EKU21324.1 hypothetical protein NGA_0396700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 77.4 bits (189), Expect = 1.100e-10
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0 
Query:   99 PTLEALLTVPLPFIARHTHNKKEAEALLQVSLIAARLDSLLDCLRTVADQAA 151
            P LEALLTVP  FIA++THNKKEAEAL+Q+SL+A RLDSLLD LR  AD AA
Sbjct:   19 PGLEALLTVPFSFIAKYTHNKKEAEALVQISLLAVRLDSLLDSLRVAADHAA 70
The following BLAST results are available for this feature:
BLAST of NO20G00610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22172.11.100e-4472.46hypothetical protein Naga_100153g6 [Nannochloropsi... [more]
XP_005855039.11.100e-1075.00hypothetical protein NGA_0396700 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002578NSK002578Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00610.1NO20G00610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594409gene_6275Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100153g6gene8261Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00610.1NO20G00610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00610 ID=NO20G00610|Name=NO20G00610|organism=Nannochloropsis oceanica|type=gene|length=2101bp
ATGTTGCTATCAGCTTCCTTTTCCTCCCTCTTTTTCTTGAACTGGGATAA
TTGTGGTAGCAAGCTATGGAGAATGAACATTTATCAGGCAGTATCATGGG
ATGTTGCACCCTGTCACCACGTCTCTTCGACAAGGAGAATTGAAGGAAGG
AGCAAAGgtaagacaataggaaaaggaaagttttccatgcgaaaaagtgt
acaattgaggatacaagatgcaactatgccctctcatcatacatatttta
tgctatgttctccttgcatacaagcttgctgctgttcagttcatatctgg
caatgtagttctttttttcgtagctatcctacaaacctagaactatcgcg
tgcaacctgacgtcgtctaggaattgcatacgaggggaatcgttcccaca
ttataatgtggtgtatagttccctttttcttggtacacgacttaattggt
gcagtgcacggttgccggattggtctgattcgacaacacctttggatcct
caccacaaccttgctagtgagcaacacgtctcctcggcagtgtttcgctt
tctctatgggaccgtgtctcaccctttcgctcctgacaaataaatagatg
gcaaaagttccatcgaattggcggtgattgtgtagcctgtcgacgtcgac
gcgagctctacagcgcaggggttcgtgataaggaaagcccgccaatcgcc
agatcacacccaccgccaaattccgcgccaagggcatttccgcacatgac
ttcttccttcttcctcattcgttgactgtattcctcacactcagtctaca
ctgccgaacacgagaacagATCGGATGCCAAACGAGGAGGACGGAGCAGG
GCGGCCAATATGGGCAGCGACTACACCACCTGAATCACCAGACGCCCGAT
CATCACCATCAGCGTTAGCATCAGCAACAGCAGTAGCATCTCAAGACGCC
GCCCTCCCTACGCTGGAAGCCCTCCTCACGGTGCCCTTGCCCTTTATCGC
CCGCCACACGCACAACAAAAAgtacgcccctctctctcttgtgtctgcat
tcatgccctcctctttcctgactcagtttttttctcccccactcaagGGA
AGCTGAAGCCCTCCTTCAAGTCTCCCTTATTGCTGCCCGACTCGACTCCC
TCCTCGATTGCCTACGGACAGTCGCCGACCAAGCCGCGgtacgtcctttc
tttttgttttcgggtctcaatcttccgttcctcacttcatgctgttgcaa
ccacacagCGCGCCCATGGCCACGCCGCCCGCCTCCATTCCCTCGTCCCC
ACAGACGTCCGCCTCAATTCATTGCTTCCTCTTCTGAAGGAGCTGGAATT
ACAACGCCGACATGACCTAGCGGCGTACCAAGAAGAGGTACACGAATGTA
CTGTCGCATTGGAGAGACACAAAGAGCTGTTGGCATGGTCAGCTTGCACG
CACAGCAGCACTGCTGAACAAGTAGGGGAGATGATGCCTCATCTGGCCGA
TGCCGCGCGAAGAATgtaaggaagggagggggtaagcaagggagagaggg
aggaaggagtcttcttgtccatgtcggcaatccaagcctccccctgcagc
ctctcatcaaagctctccttccgtccctcccttcccttccttcccccctt
tcgcagGGCCGAGGTGTTTAACGAAGTTGTTGCACGTCTCGACAGCCTCC
TGGGCGCCCGCGAATCTCTATTCCAATCGTGCCGTAGACCCAGCCACTCT
ACCTCTTCCTCCTTGTCTCCCTGGATCAGCATGGCTGAATTTGTAAAAGA
AAAGGAAGGACCAGAAACCCCTTCCTCTTCCTCCTCCCCCTCTTCCTCCC
CTTCCTCCTCCTTTTCCTCCTCTCAGGCTGCTGGCAACGGCAGCACCACT
TCTGCTGCTAATGCTTCTTCCCCCACAAAAATGAGTTCTTCAAAAACAAC
AGACGGGCAAGGGGGGGGCAGGGAAGCCCATCTACTGCTCCTCCTGTTTC
TGCTGTTACTGCTGCTACTGCTATTACGGTTGCTCCCGACGCTGCTGTTA
CAGCTGCTGCCGCCAGTGGTGTTGGTGCTGCTACTGCTACTGCTGCTGTA
G
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protein sequence of NO20G00610.1

>NO20G00610.1-protein ID=NO20G00610.1-protein|Name=NO20G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MLLSASFSSLFFLNWDNCGSKLWRMNIYQAVSWDVAPCHHVSSTRRIEGR
SKDRMPNEEDGAGRPIWAATTPPESPDARSSPSALASATAVASQDAALPT
LEALLTVPLPFIARHTHNKKEAEALLQVSLIAARLDSLLDCLRTVADQAA
RAHGHAARLHSLVPTDVRLNSLLPLLKELELQRRHDLAAYQEEVHECTVA
LERHKELLAWSACTHSSTAEQVGEMMPHLADAARRMAEVFNEVVARLDSL
LGARESLFQSCRRPSHSTSSSLSPWISMAEFVKEKEGPETPSSSSSPSSS
PSSSFSSSQAAGNGSTTSAANASSPTKMSSSKTTDGQGGGREAHLLLLLF
LLLLLLLLLRLLPTLLLQLLPPVVLVLLLLLLL*
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Synonyms
Publications