NO20G00610.1, NO20G00610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00610.1
Unique NameNO20G00610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1152
Alignment locationchr20:207527..209627 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:207527..209627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G00610.1 vs.
Match: EWM22172.1 (hypothetical protein Naga_100153g6 [Nannochloropsis gaditana])

HSP 1 Score: 190.3 bits (482), Expect = 1.100e-44
Identity = 101/140 (72.14%), Postives = 115/140 (82.14%), Query Frame = 0 
Query:   97 ALPTLEALLTVPLPFIARHTHNKKEAEALLQVSLIAARLDSLLDCLRTVADQAARAHGHAARLHSLVPTDVRLNSLLPLLKELELQRRHDLAAYQEEVHECTVALERHKELLAWSACTHSSTAEQVGEMMPHLADAARRM 237
            A P LEALLTVP  FIA++THNKKEAEAL+Q+SL+A RLDSLLD LR  AD AARA   ++RL SL   D R+ +LLPLL +L+LQRRHDL AYQEEV +CT+ALERHKELL WSA THSSTAEQVGEMMP LADAA +M
Sbjct:   17 AFPGLEALLTVPFSFIAKYTHNKKEAEALVQISLLAVRLDSLLDSLRVAADHAARARDSSSRLLSLCKEDPRVTALLPLLDQLQLQRRHDLTAYQEEVRQCTLALERHKELLGWSAGTHSSTAEQVGEMMPVLADAAMKM 156
The following BLAST results are available for this feature:
BLAST of NO20G00610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22172.11.100e-4472.14hypothetical protein Naga_100153g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00610NO20G00610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00610.1NO20G00610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00610.1.cds1NO20G00610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00610.1.cds2NO20G00610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00610.1.cds3NO20G00610.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00610.1.cds4NO20G00610.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00610.1.cds5NO20G00610.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00610.1 ID=NO20G00610.1|Name=NO20G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1152bp
ATGTTGCTATCAGCTTCCTTTTCCTCCCTCTTTTTCTTGAACTGGGATAA
TTGTGGTAGCAAGCTATGGAGAATGAACATTTATCAGGCAGTATCATGGG
ATGTTGCACCCTGTCACCACGTCTCTTCGACAAGGAGAATTGAAGGAAGG
AGCAAAGATCGGATGCCAAACGAGGAGGACGGAGCAGGGCGGCCAATATG
GGCAGCGACTACACCACCTGAATCACCAGACGCCCGATCATCACCATCAG
CGTTAGCATCAGCAACAGCAGTAGCATCTCAAGACGCCGCCCTCCCTACG
CTGGAAGCCCTCCTCACGGTGCCCTTGCCCTTTATCGCCCGCCACACGCA
CAACAAAAAGGAAGCTGAAGCCCTCCTTCAAGTCTCCCTTATTGCTGCCC
GACTCGACTCCCTCCTCGATTGCCTACGGACAGTCGCCGACCAAGCCGCG
CGCGCCCATGGCCACGCCGCCCGCCTCCATTCCCTCGTCCCCACAGACGT
CCGCCTCAATTCATTGCTTCCTCTTCTGAAGGAGCTGGAATTACAACGCC
GACATGACCTAGCGGCGTACCAAGAAGAGGTACACGAATGTACTGTCGCA
TTGGAGAGACACAAAGAGCTGTTGGCATGGTCAGCTTGCACGCACAGCAG
CACTGCTGAACAAGTAGGGGAGATGATGCCTCATCTGGCCGATGCCGCGC
GAAGAATGGCCGAGGTGTTTAACGAAGTTGTTGCACGTCTCGACAGCCTC
CTGGGCGCCCGCGAATCTCTATTCCAATCGTGCCGTAGACCCAGCCACTC
TACCTCTTCCTCCTTGTCTCCCTGGATCAGCATGGCTGAATTTGTAAAAG
AAAAGGAAGGACCAGAAACCCCTTCCTCTTCCTCCTCCCCCTCTTCCTCC
CCTTCCTCCTCCTTTTCCTCCTCTCAGGCTGCTGGCAACGGCAGCACCAC
TTCTGCTGCTAATGCTTCTTCCCCCACAAAAATGAGTTCTTCAAAAACAA
CAGACGGGCAAGGGGGGGGCAGGGAAGCCCATCTACTGCTCCTCCTGTTT
CTGCTGTTACTGCTGCTACTGCTATTACGGTTGCTCCCGACGCTGCTGTT
ACAGCTGCTGCCGCCAGTGGTGTTGGTGCTGCTACTGCTACTGCTGCTGT
AG
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protein sequence of NO20G00610.1

>NO20G00610.1-protein ID=NO20G00610.1-protein|Name=NO20G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MLLSASFSSLFFLNWDNCGSKLWRMNIYQAVSWDVAPCHHVSSTRRIEGR
SKDRMPNEEDGAGRPIWAATTPPESPDARSSPSALASATAVASQDAALPT
LEALLTVPLPFIARHTHNKKEAEALLQVSLIAARLDSLLDCLRTVADQAA
RAHGHAARLHSLVPTDVRLNSLLPLLKELELQRRHDLAAYQEEVHECTVA
LERHKELLAWSACTHSSTAEQVGEMMPHLADAARRMAEVFNEVVARLDSL
LGARESLFQSCRRPSHSTSSSLSPWISMAEFVKEKEGPETPSSSSSPSSS
PSSSFSSSQAAGNGSTTSAANASSPTKMSSSKTTDGQGGGREAHLLLLLF
LLLLLLLLLRLLPTLLLQLLPPVVLVLLLLLLL*
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mRNA from alignment at chr20:207527..209627+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00610.1 ID=NO20G00610.1|Name=NO20G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2101bp|location=Sequence derived from alignment at chr20:207527..209627+ (Nannochloropsis oceanica)
ATGTTGCTATCAGCTTCCTTTTCCTCCCTCTTTTTCTTGAACTGGGATAA
TTGTGGTAGCAAGCTATGGAGAATGAACATTTATCAGGCAGTATCATGGG
ATGTTGCACCCTGTCACCACGTCTCTTCGACAAGGAGAATTGAAGGAAGG
AGCAAAGGTAAGACAATAGGAAAAGGAAAGTTTTCCATGCGAAAAAGTGT
ACAATTGAGGATACAAGATGCAACTATGCCCTCTCATCATACATATTTTA
TGCTATGTTCTCCTTGCATACAAGCTTGCTGCTGTTCAGTTCATATCTGG
CAATGTAGTTCTTTTTTTCGTAGCTATCCTACAAACCTAGAACTATCGCG
TGCAACCTGACGTCGTCTAGGAATTGCATACGAGGGGAATCGTTCCCACA
TTATAATGTGGTGTATAGTTCCCTTTTTCTTGGTACACGACTTAATTGGT
GCAGTGCACGGTTGCCGGATTGGTCTGATTCGACAACACCTTTGGATCCT
CACCACAACCTTGCTAGTGAGCAACACGTCTCCTCGGCAGTGTTTCGCTT
TCTCTATGGGACCGTGTCTCACCCTTTCGCTCCTGACAAATAAATAGATG
GCAAAAGTTCCATCGAATTGGCGGTGATTGTGTAGCCTGTCGACGTCGAC
GCGAGCTCTACAGCGCAGGGGTTCGTGATAAGGAAAGCCCGCCAATCGCC
AGATCACACCCACCGCCAAATTCCGCGCCAAGGGCATTTCCGCACATGAC
TTCTTCCTTCTTCCTCATTCGTTGACTGTATTCCTCACACTCAGTCTACA
CTGCCGAACACGAGAACAGATCGGATGCCAAACGAGGAGGACGGAGCAGG
GCGGCCAATATGGGCAGCGACTACACCACCTGAATCACCAGACGCCCGAT
CATCACCATCAGCGTTAGCATCAGCAACAGCAGTAGCATCTCAAGACGCC
GCCCTCCCTACGCTGGAAGCCCTCCTCACGGTGCCCTTGCCCTTTATCGC
CCGCCACACGCACAACAAAAAGTACGCCCCTCTCTCTCTTGTGTCTGCAT
TCATGCCCTCCTCTTTCCTGACTCAGTTTTTTTCTCCCCCACTCAAGGGA
AGCTGAAGCCCTCCTTCAAGTCTCCCTTATTGCTGCCCGACTCGACTCCC
TCCTCGATTGCCTACGGACAGTCGCCGACCAAGCCGCGGTACGTCCTTTC
TTTTTGTTTTCGGGTCTCAATCTTCCGTTCCTCACTTCATGCTGTTGCAA
CCACACAGCGCGCCCATGGCCACGCCGCCCGCCTCCATTCCCTCGTCCCC
ACAGACGTCCGCCTCAATTCATTGCTTCCTCTTCTGAAGGAGCTGGAATT
ACAACGCCGACATGACCTAGCGGCGTACCAAGAAGAGGTACACGAATGTA
CTGTCGCATTGGAGAGACACAAAGAGCTGTTGGCATGGTCAGCTTGCACG
CACAGCAGCACTGCTGAACAAGTAGGGGAGATGATGCCTCATCTGGCCGA
TGCCGCGCGAAGAATGTAAGGAAGGGAGGGGGTAAGCAAGGGAGAGAGGG
AGGAAGGAGTCTTCTTGTCCATGTCGGCAATCCAAGCCTCCCCCTGCAGC
CTCTCATCAAAGCTCTCCTTCCGTCCCTCCCTTCCCTTCCTTCCCCCCTT
TCGCAGGGCCGAGGTGTTTAACGAAGTTGTTGCACGTCTCGACAGCCTCC
TGGGCGCCCGCGAATCTCTATTCCAATCGTGCCGTAGACCCAGCCACTCT
ACCTCTTCCTCCTTGTCTCCCTGGATCAGCATGGCTGAATTTGTAAAAGA
AAAGGAAGGACCAGAAACCCCTTCCTCTTCCTCCTCCCCCTCTTCCTCCC
CTTCCTCCTCCTTTTCCTCCTCTCAGGCTGCTGGCAACGGCAGCACCACT
TCTGCTGCTAATGCTTCTTCCCCCACAAAAATGAGTTCTTCAAAAACAAC
AGACGGGCAAGGGGGGGGCAGGGAAGCCCATCTACTGCTCCTCCTGTTTC
TGCTGTTACTGCTGCTACTGCTATTACGGTTGCTCCCGACGCTGCTGTTA
CAGCTGCTGCCGCCAGTGGTGTTGGTGCTGCTACTGCTACTGCTGCTGTA
G
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Coding sequence (CDS) from alignment at chr20:207527..209627+

>NO20G00610.1 ID=NO20G00610.1|Name=NO20G00610.1|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at chr20:207527..209627+ (Nannochloropsis oceanica)
ATGTTGCTATCAGCTTCCTTTTCCTCCCTCTTTTTCTTGAACTGGGATAA
TTGTGGTAGCAAGCTATGGAGAATGAACATTTATCAGGCAGTATCATGGG
ATGTTGCACCCTGTCACCACGTCTCTTCGACAAGGAGAATTGAAGGAAGG
AGCAAAGATCGGATGCCAAACGAGGAGGACGGAGCAGGGCGGCCAATATG
GGCAGCGACTACACCACCTGAATCACCAGACGCCCGATCATCACCATCAG
CGTTAGCATCAGCAACAGCAGTAGCATCTCAAGACGCCGCCCTCCCTACG
CTGGAAGCCCTCCTCACGGTGCCCTTGCCCTTTATCGCCCGCCACACGCA
CAACAAAAAGGAAGCTGAAGCCCTCCTTCAAGTCTCCCTTATTGCTGCCC
GACTCGACTCCCTCCTCGATTGCCTACGGACAGTCGCCGACCAAGCCGCG
CGCGCCCATGGCCACGCCGCCCGCCTCCATTCCCTCGTCCCCACAGACGT
CCGCCTCAATTCATTGCTTCCTCTTCTGAAGGAGCTGGAATTACAACGCC
GACATGACCTAGCGGCGTACCAAGAAGAGGTACACGAATGTACTGTCGCA
TTGGAGAGACACAAAGAGCTGTTGGCATGGTCAGCTTGCACGCACAGCAG
CACTGCTGAACAAGTAGGGGAGATGATGCCTCATCTGGCCGATGCCGCGC
GAAGAATGGCCGAGGTGTTTAACGAAGTTGTTGCACGTCTCGACAGCCTC
CTGGGCGCCCGCGAATCTCTATTCCAATCGTGCCGTAGACCCAGCCACTC
TACCTCTTCCTCCTTGTCTCCCTGGATCAGCATGGCTGAATTTGTAAAAG
AAAAGGAAGGACCAGAAACCCCTTCCTCTTCCTCCTCCCCCTCTTCCTCC
CCTTCCTCCTCCTTTTCCTCCTCTCAGGCTGCTGGCAACGGCAGCACCAC
TTCTGCTGCTAATGCTTCTTCCCCCACAAAAATGAGTTCTTCAAAAACAA
CAGACGGGCAAGGGGGGGGCAGGGAAGCCCATCTACTGCTCCTCCTGTTT
CTGCTGTTACTGCTGCTACTGCTATTACGGTTGCTCCCGACGCTGCTGTT
ACAGCTGCTGCCGCCAGTGGTGTTGGTGCTGCTACTGCTACTGCTGCTGT
AG
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Synonyms
Publications