NO20G00570, NO20G00570 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO20G00570 vs. NCBI_GenBank
Match: EWM22180.1 (prefoldin subunit 3 [Nannochloropsis gaditana]) HSP 1 Score: 246.1 bits (627), Expect = 1.100e-61 Identity = 123/156 (78.85%), Postives = 135/156 (86.54%), Query Frame = 0 Query: 5 AEDALARQQNLDIQKHLSVGRNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACDGRVCLWLGANVMLEYSYEEAVGVLETSLANAKEKL 161 A D +QN+DIQKHLSVG+NPRGIPTA FI+DV FLQ LGGVPVETAIGAFNELYGK K +ENSL R K++MK+K PEIEKTLELV +L+ KQ EGE+L+THYNLADTIYAKA VAC GRVCLWLGANVMLEYSYEEA GVLETSL NAKEKL Sbjct: 3 ARDTGTMEQNVDIQKHLSVGKNPRGIPTATFIEDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACHGRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKL 158
BLAST of NO20G00570 vs. NCBI_GenBank
Match: XP_005855038.1 (prefoldin subunit 3 [Nannochloropsis gaditana CCMP526] >EKU21323.1 prefoldin subunit 3 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 235.7 bits (600), Expect = 1.500e-58 Identity = 123/172 (71.51%), Postives = 135/172 (78.49%), Query Frame = 0 Query: 5 AEDALARQQNLDIQKHLSVGRNPRGIPTAAFI----------------DDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACDGRVCLWLGANVMLEYSYEEAVGVLETSLANAKEKL 161 A D +QN+DIQKHLSVG+NPRGIPTA FI +DV FLQ LGGVPVETAIGAFNELYGK K +ENSL R K++MK+K PEIEKTLELV +L+ KQ EGE+L+THYNLADTIYAKA VAC GRVCLWLGANVMLEYSYEEA GVLETSL NAKEKL Sbjct: 3 ARDTGTMEQNVDIQKHLSVGKNPRGIPTATFIPPQPLSTTRFLTCAQKEDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACHGRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKL 174
BLAST of NO20G00570 vs. NCBI_GenBank
Match: CBJ27267.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 171.4 bits (433), Expect = 3.600e-39 Identity = 83/135 (61.48%), Postives = 109/135 (80.74%), Query Frame = 0 Query: 25 RNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACDGRVCLWLGANVMLEYSYEEAVGVLETSLANAKEK 160 +NPRGIP FIDDV FL +LG VET IGAFNELY KYKLME+++ + K +MK K PEIE++LELVR LQE+Q + E++ T+Y+LADT++AKA + CDGRVC+WLGA+VM+EY+Y+EA+ +LE +LA A EK Sbjct: 24 KNPRGIPEVVFIDDVVQFLARLGVEEVETPIGAFNELYSKYKLMESNMDKAKQSMKDKVPEIERSLELVRHLQERQDKEETVKTNYSLADTVFAKAELKCDGRVCIWLGASVMVEYTYKEALELLERNLATALEK 158
BLAST of NO20G00570 vs. NCBI_GenBank
Match: XP_002909444.1 (prefoldin subunit 3, putative [Phytophthora infestans T30-4] >EEY58258.1 prefoldin subunit 3, putative [Phytophthora infestans T30-4]) HSP 1 Score: 147.1 bits (370), Expect = 7.200e-32 Identity = 75/161 (46.58%), Postives = 106/161 (65.84%), Query Frame = 0 Query: 2 ATPAEDALARQQNLDIQKHLSVG-RNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACD-GRVCLWLGANVMLEYSYEEAVGVLETSLANAKEKL 161 +TP L R + L +G RNPRGIP+A F+D VD F+ G +E +GA ++Y KYK ME SL + + K K P+ +K L++VR L K+ EGE+L T +NL+D +YAKA+V C+ G+VC+WLGA VM+EY YEEA +LE ++A+A E+L Sbjct: 4 STPTATGLERPEALARMNAAIMGERNPRGIPSAVFVDSVDTFMNACGVKNIEPLVGALQQMYSKYKFMETSLQKNRETFKRKIPDTQKDLDMVRHLIAKRDEGETLQTQFNLSDNVYAKASVDCNVGKVCIWLGAQVMVEYPYEEAQELLEKNVASATERL 164
BLAST of NO20G00570 vs. NCBI_GenBank
Match: XP_024579108.1 (prefoldin subunit 3 [Plasmopara halstedii] >CEG42739.1 prefoldin subunit 3 [Plasmopara halstedii]) HSP 1 Score: 143.7 bits (361), Expect = 8.000e-31 Identity = 68/141 (48.23%), Postives = 98/141 (69.50%), Query Frame = 0 Query: 25 RNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACD-GRVCLWLGANVMLEYSYEEAVGVLETSLANAKEKLVRRE 165 RNPRGIP++ F+D V+ ++ + G +E +GA ++Y KYK ME +L + + K K PE +K L++V+ L K+ EGE+L T +NLAD +YA A+V C G+VC+WLGA VM+EYSYEEA +LE ++A A EKL + E Sbjct: 24 RNPRGIPSSVFVDSVESYMTECGVKTIEPLVGALQQMYSKYKFMETNLQKNRETFKRKIPETQKDLDMVQHLMTKRDEGETLQTQFNLADNVYANASVDCSLGKVCIWLGAQVMVEYSYEEAQELLEKNMATASEKLAQIE 164
BLAST of NO20G00570 vs. NCBI_GenBank
Match: GAY04671.1 (prefoldin subunit 3, putative [Pythium insidiosum]) HSP 1 Score: 143.3 bits (360), Expect = 1.000e-30 Identity = 76/159 (47.80%), Postives = 111/159 (69.81%), Query Frame = 0 Query: 7 DALARQQNLDIQKHLSVGRNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATV-ACDGRVCLWLGANVMLEYSYEEAVGVLETSLANAKEKLVRRE 165 +ALAR L I + RN RGIP+A F+++V+ F+ +G +E +GA +LY KYK ME +L + + + K K PE EK LE++R L +KQ EGE++ TH++LAD +YAKATV + G+VC+WLGANVM+EY+YEEA+ +LE ++ A E+L + E Sbjct: 14 EALARIPELIIGE-----RNARGIPSAVFVENVEAFMTTIGIRSIEPLVGALQQLYSKYKFMEVNLQKNRDSFKRKIPETEKDLEMLRHLLQKQEEGENIQTHFSLADNVYAKATVDSSVGKVCIWLGANVMVEYTYEEALELLEGNVKIATERLEQLE 167
BLAST of NO20G00570 vs. NCBI_GenBank
Match: XP_009036759.1 (hypothetical protein AURANDRAFT_26059 [Aureococcus anophagefferens] >EGB08775.1 hypothetical protein AURANDRAFT_26059 [Aureococcus anophagefferens]) HSP 1 Score: 142.9 bits (359), Expect = 1.400e-30 Identity = 73/137 (53.28%), Postives = 93/137 (67.88%), Query Frame = 0 Query: 21 LSVGRNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACDGRVCLWLGANVMLEYSYEEAVGVLETSLANAK 158 LS NPRGIP AFID V+ L VET IGAFNEL+ K+K++E +RTK++MK K PEI KTL+LV L+ K E +HY+L++ IY +AT+ G VCLWLGANVM+EY Y+EA+ +L SL NAK Sbjct: 5 LSGNTNPRGIPHVAFIDSVESTLAATTDGTVETLIGAFNELHQKFKILEGHKARTKMSMKQKIPEITKTLQLVEHLKAKHEAEEDFMSHYSLSEMIYGRATITPTGNVCLWLGANVMVEYPYDEALDILTLSLKNAK 141
BLAST of NO20G00570 vs. NCBI_GenBank
Match: POM62314.1 (Prefoldin subunit 3 [Phytophthora palmivora var. palmivora] >POM73928.1 Prefoldin subunit 3 [Phytophthora palmivora var. palmivora]) HSP 1 Score: 142.9 bits (359), Expect = 1.400e-30 Identity = 72/141 (51.06%), Postives = 96/141 (68.09%), Query Frame = 0 Query: 25 RNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACD-GRVCLWLGANVMLEYSYEEAVGVLETSLANAKEKLVRRE 165 RN RGIP+A F+D VD F+ G +E +GA ++Y KYK ME SL + + K K P+ +K L++VR L K+ EGE+L T +NLAD +YAKA V C G+VC+WLGA VM+EY YEEA +LET++A A EKL + E Sbjct: 28 RNARGIPSAVFVDAVDAFMDACGVKNIEPLVGALQQMYSKYKFMETSLQKNRETFKRKIPDTQKDLDMVRHLIAKRDEGETLLTQFNLADNVYAKAAVDCSVGKVCIWLGAQVMVEYPYEEAQELLETNVATATEKLAQIE 168
BLAST of NO20G00570 vs. NCBI_GenBank
Match: XP_009514063.1 (hypothetical protein PHYSODRAFT_320679 [Phytophthora sojae] >EGZ26788.1 hypothetical protein PHYSODRAFT_320679 [Phytophthora sojae]) HSP 1 Score: 142.5 bits (358), Expect = 1.800e-30 Identity = 69/137 (50.36%), Postives = 95/137 (69.34%), Query Frame = 0 Query: 25 RNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACD-GRVCLWLGANVMLEYSYEEAVGVLETSLANAKEKL 161 RNPRGIP+A F+D V+ F+ G +E +GA ++Y KYK ME SL + + K K P+ +K L++VR L K+ EGE+L T +NLAD +YAKA V C G+VC+WLGA VM+EY YE+A +LE ++A+A EKL Sbjct: 28 RNPRGIPSAVFVDSVEAFMDACGVKNIEPLVGALQQMYSKYKFMETSLQKNRETFKRKIPDTQKDLDMVRHLIAKRDEGETLQTQFNLADNVYAKAAVDCSVGKVCIWLGAQVMVEYPYEDAQDLLEKNVASATEKL 164
BLAST of NO20G00570 vs. NCBI_GenBank
Match: ETK74107.1 (hypothetical protein L915_19024 [Phytophthora parasitica] >ETL27532.1 hypothetical protein L916_18926 [Phytophthora parasitica] >ETM33979.1 hypothetical protein L914_18834 [Phytophthora parasitica] >ETO62523.1 hypothetical protein F444_19551 [Phytophthora parasitica P1976] >ETP03623.1 hypothetical protein F441_19425 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 142.1 bits (357), Expect = 2.300e-30 Identity = 68/137 (49.64%), Postives = 94/137 (68.61%), Query Frame = 0 Query: 25 RNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACD-GRVCLWLGANVMLEYSYEEAVGVLETSLANAKEKL 161 RNPRGIP+A F+D VD F+ G +E +GA ++Y KYK ME SL + + K K P+ +K L +VR L K+ EGE+L T +NL+D +YAKA+V C G+VC+WLGA +M+EY Y+EA +LE ++A A EKL Sbjct: 28 RNPRGIPSAVFVDSVDTFMDACGVKNIEPLVGALQQMYSKYKFMETSLQKNRETFKRKIPDTQKDLNMVRHLIAKRDEGETLQTQFNLSDNVYAKASVECSVGKVCIWLGAQIMVEYPYDEAQELLEKNVATATEKL 164 The following BLAST results are available for this feature:
BLAST of NO20G00570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G00570 ID=NO20G00570|Name=NO20G00570|organism=Nannochloropsis oceanica|type=gene|length=2037bpback to top protein sequence of NO20G00570.2 >NO20G00570.2-protein ID=NO20G00570.2-protein|Name=NO20G00570.2|organism=Nannochloropsis oceanica|type=polypeptide|length=252bpback to top protein sequence of NO20G00570.1 >NO20G00570.1-protein ID=NO20G00570.1-protein|Name=NO20G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bpback to top Synonyms
Publications
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