NO20G00570, NO20G00570 (gene) Nannochloropsis oceanica

Overview
NameNO20G00570
Unique NameNO20G00570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2037
Alignment locationchr20:193317..195353 -

Link to JBrowse

Properties
Property NameValue
DescriptionPrefoldin subunit 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:193317..195353 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0009987cellular process
Vocabulary: Cellular Component
TermDefinition
GO:0016272prefoldin complex
GO:0005575cellular_component
Vocabulary: INTERPRO
TermDefinition
IPR016655PFD3
IPR004127Prefoldin_subunit_alpha
Homology
BLAST of NO20G00570 vs. NCBI_GenBank
Match: EWM22180.1 (prefoldin subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 246.1 bits (627), Expect = 1.100e-61
Identity = 123/156 (78.85%), Postives = 135/156 (86.54%), Query Frame = 0
Query:    5 AEDALARQQNLDIQKHLSVGRNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACDGRVCLWLGANVMLEYSYEEAVGVLETSLANAKEKL 161
            A D    +QN+DIQKHLSVG+NPRGIPTA FI+DV  FLQ LGGVPVETAIGAFNELYGK K +ENSL R K++MK+K PEIEKTLELV +L+ KQ EGE+L+THYNLADTIYAKA VAC GRVCLWLGANVMLEYSYEEA GVLETSL NAKEKL
Sbjct:    3 ARDTGTMEQNVDIQKHLSVGKNPRGIPTATFIEDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACHGRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKL 158          
BLAST of NO20G00570 vs. NCBI_GenBank
Match: XP_005855038.1 (prefoldin subunit 3 [Nannochloropsis gaditana CCMP526] >EKU21323.1 prefoldin subunit 3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 235.7 bits (600), Expect = 1.500e-58
Identity = 123/172 (71.51%), Postives = 135/172 (78.49%), Query Frame = 0
Query:    5 AEDALARQQNLDIQKHLSVGRNPRGIPTAAFI----------------DDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACDGRVCLWLGANVMLEYSYEEAVGVLETSLANAKEKL 161
            A D    +QN+DIQKHLSVG+NPRGIPTA FI                +DV  FLQ LGGVPVETAIGAFNELYGK K +ENSL R K++MK+K PEIEKTLELV +L+ KQ EGE+L+THYNLADTIYAKA VAC GRVCLWLGANVMLEYSYEEA GVLETSL NAKEKL
Sbjct:    3 ARDTGTMEQNVDIQKHLSVGKNPRGIPTATFIPPQPLSTTRFLTCAQKEDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACHGRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKL 174          
BLAST of NO20G00570 vs. NCBI_GenBank
Match: CBJ27267.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 171.4 bits (433), Expect = 3.600e-39
Identity = 83/135 (61.48%), Postives = 109/135 (80.74%), Query Frame = 0
Query:   25 RNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACDGRVCLWLGANVMLEYSYEEAVGVLETSLANAKEK 160
            +NPRGIP   FIDDV  FL +LG   VET IGAFNELY KYKLME+++ + K +MK K PEIE++LELVR LQE+Q + E++ T+Y+LADT++AKA + CDGRVC+WLGA+VM+EY+Y+EA+ +LE +LA A EK
Sbjct:   24 KNPRGIPEVVFIDDVVQFLARLGVEEVETPIGAFNELYSKYKLMESNMDKAKQSMKDKVPEIERSLELVRHLQERQDKEETVKTNYSLADTVFAKAELKCDGRVCIWLGASVMVEYTYKEALELLERNLATALEK 158          
BLAST of NO20G00570 vs. NCBI_GenBank
Match: XP_002909444.1 (prefoldin subunit 3, putative [Phytophthora infestans T30-4] >EEY58258.1 prefoldin subunit 3, putative [Phytophthora infestans T30-4])

HSP 1 Score: 147.1 bits (370), Expect = 7.200e-32
Identity = 75/161 (46.58%), Postives = 106/161 (65.84%), Query Frame = 0
Query:    2 ATPAEDALARQQNLDIQKHLSVG-RNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACD-GRVCLWLGANVMLEYSYEEAVGVLETSLANAKEKL 161
            +TP    L R + L       +G RNPRGIP+A F+D VD F+   G   +E  +GA  ++Y KYK ME SL + +   K K P+ +K L++VR L  K+ EGE+L T +NL+D +YAKA+V C+ G+VC+WLGA VM+EY YEEA  +LE ++A+A E+L
Sbjct:    4 STPTATGLERPEALARMNAAIMGERNPRGIPSAVFVDSVDTFMNACGVKNIEPLVGALQQMYSKYKFMETSLQKNRETFKRKIPDTQKDLDMVRHLIAKRDEGETLQTQFNLSDNVYAKASVDCNVGKVCIWLGAQVMVEYPYEEAQELLEKNVASATERL 164          
BLAST of NO20G00570 vs. NCBI_GenBank
Match: XP_024579108.1 (prefoldin subunit 3 [Plasmopara halstedii] >CEG42739.1 prefoldin subunit 3 [Plasmopara halstedii])

HSP 1 Score: 143.7 bits (361), Expect = 8.000e-31
Identity = 68/141 (48.23%), Postives = 98/141 (69.50%), Query Frame = 0
Query:   25 RNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACD-GRVCLWLGANVMLEYSYEEAVGVLETSLANAKEKLVRRE 165
            RNPRGIP++ F+D V+ ++ + G   +E  +GA  ++Y KYK ME +L + +   K K PE +K L++V+ L  K+ EGE+L T +NLAD +YA A+V C  G+VC+WLGA VM+EYSYEEA  +LE ++A A EKL + E
Sbjct:   24 RNPRGIPSSVFVDSVESYMTECGVKTIEPLVGALQQMYSKYKFMETNLQKNRETFKRKIPETQKDLDMVQHLMTKRDEGETLQTQFNLADNVYANASVDCSLGKVCIWLGAQVMVEYSYEEAQELLEKNMATASEKLAQIE 164          
BLAST of NO20G00570 vs. NCBI_GenBank
Match: GAY04671.1 (prefoldin subunit 3, putative [Pythium insidiosum])

HSP 1 Score: 143.3 bits (360), Expect = 1.000e-30
Identity = 76/159 (47.80%), Postives = 111/159 (69.81%), Query Frame = 0
Query:    7 DALARQQNLDIQKHLSVGRNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATV-ACDGRVCLWLGANVMLEYSYEEAVGVLETSLANAKEKLVRRE 165
            +ALAR   L I +     RN RGIP+A F+++V+ F+  +G   +E  +GA  +LY KYK ME +L + + + K K PE EK LE++R L +KQ EGE++ TH++LAD +YAKATV +  G+VC+WLGANVM+EY+YEEA+ +LE ++  A E+L + E
Sbjct:   14 EALARIPELIIGE-----RNARGIPSAVFVENVEAFMTTIGIRSIEPLVGALQQLYSKYKFMEVNLQKNRDSFKRKIPETEKDLEMLRHLLQKQEEGENIQTHFSLADNVYAKATVDSSVGKVCIWLGANVMVEYTYEEALELLEGNVKIATERLEQLE 167          
BLAST of NO20G00570 vs. NCBI_GenBank
Match: XP_009036759.1 (hypothetical protein AURANDRAFT_26059 [Aureococcus anophagefferens] >EGB08775.1 hypothetical protein AURANDRAFT_26059 [Aureococcus anophagefferens])

HSP 1 Score: 142.9 bits (359), Expect = 1.400e-30
Identity = 73/137 (53.28%), Postives = 93/137 (67.88%), Query Frame = 0
Query:   21 LSVGRNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACDGRVCLWLGANVMLEYSYEEAVGVLETSLANAK 158
            LS   NPRGIP  AFID V+  L       VET IGAFNEL+ K+K++E   +RTK++MK K PEI KTL+LV  L+ K    E   +HY+L++ IY +AT+   G VCLWLGANVM+EY Y+EA+ +L  SL NAK
Sbjct:    5 LSGNTNPRGIPHVAFIDSVESTLAATTDGTVETLIGAFNELHQKFKILEGHKARTKMSMKQKIPEITKTLQLVEHLKAKHEAEEDFMSHYSLSEMIYGRATITPTGNVCLWLGANVMVEYPYDEALDILTLSLKNAK 141          
BLAST of NO20G00570 vs. NCBI_GenBank
Match: POM62314.1 (Prefoldin subunit 3 [Phytophthora palmivora var. palmivora] >POM73928.1 Prefoldin subunit 3 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 142.9 bits (359), Expect = 1.400e-30
Identity = 72/141 (51.06%), Postives = 96/141 (68.09%), Query Frame = 0
Query:   25 RNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACD-GRVCLWLGANVMLEYSYEEAVGVLETSLANAKEKLVRRE 165
            RN RGIP+A F+D VD F+   G   +E  +GA  ++Y KYK ME SL + +   K K P+ +K L++VR L  K+ EGE+L T +NLAD +YAKA V C  G+VC+WLGA VM+EY YEEA  +LET++A A EKL + E
Sbjct:   28 RNARGIPSAVFVDAVDAFMDACGVKNIEPLVGALQQMYSKYKFMETSLQKNRETFKRKIPDTQKDLDMVRHLIAKRDEGETLLTQFNLADNVYAKAAVDCSVGKVCIWLGAQVMVEYPYEEAQELLETNVATATEKLAQIE 168          
BLAST of NO20G00570 vs. NCBI_GenBank
Match: XP_009514063.1 (hypothetical protein PHYSODRAFT_320679 [Phytophthora sojae] >EGZ26788.1 hypothetical protein PHYSODRAFT_320679 [Phytophthora sojae])

HSP 1 Score: 142.5 bits (358), Expect = 1.800e-30
Identity = 69/137 (50.36%), Postives = 95/137 (69.34%), Query Frame = 0
Query:   25 RNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACD-GRVCLWLGANVMLEYSYEEAVGVLETSLANAKEKL 161
            RNPRGIP+A F+D V+ F+   G   +E  +GA  ++Y KYK ME SL + +   K K P+ +K L++VR L  K+ EGE+L T +NLAD +YAKA V C  G+VC+WLGA VM+EY YE+A  +LE ++A+A EKL
Sbjct:   28 RNPRGIPSAVFVDSVEAFMDACGVKNIEPLVGALQQMYSKYKFMETSLQKNRETFKRKIPDTQKDLDMVRHLIAKRDEGETLQTQFNLADNVYAKAAVDCSVGKVCIWLGAQVMVEYPYEDAQDLLEKNVASATEKL 164          
BLAST of NO20G00570 vs. NCBI_GenBank
Match: ETK74107.1 (hypothetical protein L915_19024 [Phytophthora parasitica] >ETL27532.1 hypothetical protein L916_18926 [Phytophthora parasitica] >ETM33979.1 hypothetical protein L914_18834 [Phytophthora parasitica] >ETO62523.1 hypothetical protein F444_19551 [Phytophthora parasitica P1976] >ETP03623.1 hypothetical protein F441_19425 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 142.1 bits (357), Expect = 2.300e-30
Identity = 68/137 (49.64%), Postives = 94/137 (68.61%), Query Frame = 0
Query:   25 RNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACD-GRVCLWLGANVMLEYSYEEAVGVLETSLANAKEKL 161
            RNPRGIP+A F+D VD F+   G   +E  +GA  ++Y KYK ME SL + +   K K P+ +K L +VR L  K+ EGE+L T +NL+D +YAKA+V C  G+VC+WLGA +M+EY Y+EA  +LE ++A A EKL
Sbjct:   28 RNPRGIPSAVFVDSVDTFMDACGVKNIEPLVGALQQMYSKYKFMETSLQKNRETFKRKIPDTQKDLNMVRHLIAKRDEGETLQTQFNLSDNVYAKASVECSVGKVCIWLGAQIMVEYPYDEAQELLEKNVATATEKL 164          
The following BLAST results are available for this feature:
BLAST of NO20G00570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22180.11.100e-6178.85prefoldin subunit 3 [Nannochloropsis gaditana][more]
XP_005855038.11.500e-5871.51prefoldin subunit 3 [Nannochloropsis gaditana CCMP... [more]
CBJ27267.13.600e-3961.48conserved unknown protein [Ectocarpus siliculosus][more]
XP_002909444.17.200e-3246.58prefoldin subunit 3, putative [Phytophthora infest... [more]
XP_024579108.18.000e-3148.23prefoldin subunit 3 [Plasmopara halstedii] >CEG427... [more]
GAY04671.11.000e-3047.80prefoldin subunit 3, putative [Pythium insidiosum][more]
XP_009036759.11.400e-3053.28hypothetical protein AURANDRAFT_26059 [Aureococcus... [more]
POM62314.11.400e-3051.06Prefoldin subunit 3 [Phytophthora palmivora var. p... [more]
XP_009514063.11.800e-3050.36hypothetical protein PHYSODRAFT_320679 [Phytophtho... [more]
ETK74107.12.300e-3049.64hypothetical protein L915_19024 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002583NSK002583Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00570.2NO20G00570.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G00570.1NO20G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594399gene_6271Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100153g10gene8265Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00570.2NO20G00570.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G00570.1NO20G00570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00570 ID=NO20G00570|Name=NO20G00570|organism=Nannochloropsis oceanica|type=gene|length=2037bp
GTTTGTGGCGTGTGCAGTGGCGCGTGTGGCGTGTGCAGTGGCGCGTGTGG
CGTGTCGTGTGAGCCATTACCGTTGGGTAGTCAAATCGTAGGGGCCAACA
AGTCGTGGAAGTCGAGTCGCGGAAAAAGCGAGCATACCTCCTCCCCTACC
CGCACTCATCCGCAGACACAGCCACAAAACATGCACCATACATACAAGCA
TAACGTCGACCATACCACCAGCAGGAGAAGGACATTCAAACGGGGCAGCG
AGATGTGCTGCATCTGAAGTCTGCCTACCAGCAGCGTCTTTCTCCAAGCC
GCACGACACGCATCGAAAAACAACTCGCTAGTTCTACGGCTGCGCACCCT
TACCACCGGCACCAAATTTCCCCTACCAAAAACTACAGAGGGATCATGGC
AACCCCCGCCGAGGACGCCCTAGCACGGCAACAAAATCTCGACATACAGA
AGCATCTTTCCGTGGGCAGGAACCCTCGTGGCATCCCCACTGCGGCCTTC
ATTgtgagtatttgacaaatacctacatgcccttcccctttccccctctc
tctccctccctccctcccatcctacatcgcggtgtgactcacaacgttcc
accacgctgtttaaacagGACGATGTGGACGATTTCTTACAGAAGTTGGG
TGGGGTACCTGTGGAGACGGCCATCGGGGCTTTCAACGAGCTCTATGGgt
aagggaggggacagaggagggatgagacgataaacggatagagggaagag
gctgtatgggacatgtcacaaacatttgtattgtatggattcttgtcttc
cgtgggttttgttctatttcacttcttttgttctcctccttatttgaagc
ttgccgtttcactttgttgtgcatgctacctctcctttttgctccatctc
ctcgcacttttttcccaagtctacacccacaccctctctcttcctccctc
tcactctttctcctctcctcagTAAATACAAGCTGATGGAAAATAGCCTC
AGTCGGACCAAGATCAACATGAAGAGTAAAAAGCCAGAGATCGAAAAAAC
GTTGGAACTCGTTCGAATCCTGCAAGAGAAGCAAATGGAGGGAGAAAGCC
TCTCCACGCATTACAACCTAGgtaggtttccttaatttcctctatctccc
tcccctcgtcttgtcctcactcctaccctaggtgtcttccttttccccac
caccctttctctctccttctcgccctccttccctcctttggtctggctct
ccacgcgcactacgcggattttcaattgttttccttgcagtccaaaaccc
ctggaggcgacagcaagctcggtaggtagcctccctcacactctttcttc
ctccctccctctctctctctccctccttccctgtagCTGACACTATCTAC
GCCAAAGCCACGGTGGCCTGCGACGGCCGCGTCTGTCTATGGTTGGGGGC
GAACGTCATGCTTGAATACTCGTACGAGGAGGCCGTGGGGGTGCTGGAGA
CGAGCCTTGCCAACGCCAAAGAAAAACTGgtgaggagggagggaaagagg
gagggagggacggggcatgtcgtgtacgagtttaatttaagggacgatat
acttctggggaatcaaaggagaaaaaagtgcgtcatccctccctaccttt
ccatctcttttccccgtcctttcaaaactccctccatcgctcccttcctt
tatctctttcaatccccgccagAAAACGACGAACGAGGACCTCGAGCACC
TCAAGAATCAGACTATCACCGTAGAAGTCAACATGGCCCGTCTCTTCAAC
CATGACGTCAAAAGGCGGAAGGCCTTGCAGCTGCAGAAGTTGGAAGGAGG
AGGAGCAGCGGGAGCAGGAGCTGGAGGAGGGAAAGTTAAGGCGAATGTGA
AGGCGTTGGCATGAGGGAGGGAGCAAGGAAACGGGGGGAGAGGGAAACGT
GTAAAAGAGAGATTAAGATATTTTCATTCAAAGGGAATCGATGTAACCCA
CAGCACCACCACCACCACCACCAGCAGCTCCTGCTGC
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protein sequence of NO20G00570.2

>NO20G00570.2-protein ID=NO20G00570.2-protein|Name=NO20G00570.2|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MATPAEDALARQQNLDIQKHLSVGRNPRGIPTAAFIDDVDDFLQKLGGVP
VETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQ
MEGESLSTHYNLADTIYAKATVACDGRVCLWLGANVMLEYSYEEAVGVLE
TSLANAKEKLVRREGKREGGTGHVVYEFNLRDDILLGNQRRKKCVIPPYL
SISFPRPFKTPSIAPFLYLFQSPPENDERGPRAPQESDYHRRSQHGPSLQ
P*
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protein sequence of NO20G00570.1

>NO20G00570.1-protein ID=NO20G00570.1-protein|Name=NO20G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MATPAEDALARQQNLDIQKHLSVGRNPRGIPTAAFIDDVDDFLQKLGGVP
VETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQ
MEGESLSTHYNLADTIYAKATVACDGRVCLWLGANVMLEYSYEEAVGVLE
TSLANAKEKLKTTNEDLEHLKNQTITVEVNMARLFNHDVKRRKALQLQKL
EGGGAAGAGAGGGKVKANVKALA*
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Synonyms
Publications