NO20G00570.1, NO20G00570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00570.1
Unique NameNO20G00570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1190
Alignment locationchr20:193317..195353 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:193317..195353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G00570.1 vs.
Match: EWM22180.1 (prefoldin subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 311.2 bits (796), Expect = 2.600e-81
Identity = 163/216 (75.46%), Postives = 179/216 (82.87%), Query Frame = 0 
Query:    5 AEDALARQQNLDIQKHLSVGRNPRGIPTAAFIDDVDDFLQKLGGVPVETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQMEGESLSTHYNLADTIYAKATVACDGRVCLWLGANVMLEYSYEEAVGVLETSLANAKEKLKTTNEDLEHLKNQTITVEVNMARLFNHDVKRRKALQLQKLEGGGAAGAGAGGGKVKANVK 221
            A D    +QN+DIQKHLSVG+NPRGIPTA FI+DV  FLQ LGGVPVETAIGAFNELYGK K +ENSL R K++MK+K PEIEKTLELV +L+ KQ EGE+L+THYNLADTIYAKA VAC GRVCLWLGANVMLEYSYEEA GVLETSL NAKEKLKTTNEDLEHLKNQT T+EVNMARLFN+DVKRRKAL   + E G A   G G G+   N K
Sbjct:    3 ARDTGTMEQNVDIQKHLSVGKNPRGIPTATFIEDVGAFLQTLGGVPVETAIGAFNELYGKCKTLENSLGRVKLSMKAKIPEIEKTLELVHVLEGKQAEGEALTTHYNLADTIYAKAEVACHGRVCLWLGANVMLEYSYEEAKGVLETSLRNAKEKLKTTNEDLEHLKNQTTTIEVNMARLFNYDVKRRKAL---RQEEGAADKTGGGKGRGNGNPK 215
The following BLAST results are available for this feature:
BLAST of NO20G00570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22180.12.600e-8175.46prefoldin subunit 3 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00570NO20G00570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00570.1NO20G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00570.1.cds1NO20G00570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00570.1.cds2NO20G00570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00570.1.cds3NO20G00570.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00570.1.cds4NO20G00570.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00570.1.cds5NO20G00570.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00570.1 ID=NO20G00570.1|Name=NO20G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1190bp
GTTTGTGGCGTGTGCAGTGGCGCGTGTGGCGTGTGCAGTGGCGCGTGTGG
CGTGTCGTGTGAGCCATTACCGTTGGGTAGTCAAATCGTAGGGGCCAACA
AGTCGTGGAAGTCGAGTCGCGGAAAAAGCGAGCATACCTCCTCCCCTACC
CGCACTCATCCGCAGACACAGCCACAAAACATGCACCATACATACAAGCA
TAACGTCGACCATACCACCAGCAGGAGAAGGACATTCAAACGGGGCAGCG
AGATGTGCTGCATCTGAAGTCTGCCTACCAGCAGCGTCTTTCTCCAAGCC
GCACGACACGCATCGAAAAACAACTCGCTAGTTCTACGGCTGCGCACCCT
TACCACCGGCACCAAATTTCCCCTACCAAAAACTACAGAGGGATCATGGC
AACCCCCGCCGAGGACGCCCTAGCACGGCAACAAAATCTCGACATACAGA
AGCATCTTTCCGTGGGCAGGAACCCTCGTGGCATCCCCACTGCGGCCTTC
ATTGACGATGTGGACGATTTCTTACAGAAGTTGGGTGGGGTACCTGTGGA
GACGGCCATCGGGGCTTTCAACGAGCTCTATGGTAAATACAAGCTGATGG
AAAATAGCCTCAGTCGGACCAAGATCAACATGAAGAGTAAAAAGCCAGAG
ATCGAAAAAACGTTGGAACTCGTTCGAATCCTGCAAGAGAAGCAAATGGA
GGGAGAAAGCCTCTCCACGCATTACAACCTAGCTGACACTATCTACGCCA
AAGCCACGGTGGCCTGCGACGGCCGCGTCTGTCTATGGTTGGGGGCGAAC
GTCATGCTTGAATACTCGTACGAGGAGGCCGTGGGGGTGCTGGAGACGAG
CCTTGCCAACGCCAAAGAAAAACTGAAAACGACGAACGAGGACCTCGAGC
ACCTCAAGAATCAGACTATCACCGTAGAAGTCAACATGGCCCGTCTCTTC
AACCATGACGTCAAAAGGCGGAAGGCCTTGCAGCTGCAGAAGTTGGAAGG
AGGAGGAGCAGCGGGAGCAGGAGCTGGAGGAGGGAAAGTTAAGGCGAATG
TGAAGGCGTTGGCATGAGGGAGGGAGCAAGGAAACGGGGGGAGAGGGAAA
CGTGTAAAAGAGAGATTAAGATATTTTCATTCAAAGGGAATCGATGTAAC
CCACAGCACCACCACCACCACCACCAGCAGCTCCTGCTGC
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protein sequence of NO20G00570.1

>NO20G00570.1-protein ID=NO20G00570.1-protein|Name=NO20G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MATPAEDALARQQNLDIQKHLSVGRNPRGIPTAAFIDDVDDFLQKLGGVP
VETAIGAFNELYGKYKLMENSLSRTKINMKSKKPEIEKTLELVRILQEKQ
MEGESLSTHYNLADTIYAKATVACDGRVCLWLGANVMLEYSYEEAVGVLE
TSLANAKEKLKTTNEDLEHLKNQTITVEVNMARLFNHDVKRRKALQLQKL
EGGGAAGAGAGGGKVKANVKALA*
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mRNA from alignment at chr20:193317..195353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00570.1 ID=NO20G00570.1|Name=NO20G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=2037bp|location=Sequence derived from alignment at chr20:193317..195353- (Nannochloropsis oceanica)
GTTTGTGGCGTGTGCAGTGGCGCGTGTGGCGTGTGCAGTGGCGCGTGTGG
CGTGTCGTGTGAGCCATTACCGTTGGGTAGTCAAATCGTAGGGGCCAACA
AGTCGTGGAAGTCGAGTCGCGGAAAAAGCGAGCATACCTCCTCCCCTACC
CGCACTCATCCGCAGACACAGCCACAAAACATGCACCATACATACAAGCA
TAACGTCGACCATACCACCAGCAGGAGAAGGACATTCAAACGGGGCAGCG
AGATGTGCTGCATCTGAAGTCTGCCTACCAGCAGCGTCTTTCTCCAAGCC
GCACGACACGCATCGAAAAACAACTCGCTAGTTCTACGGCTGCGCACCCT
TACCACCGGCACCAAATTTCCCCTACCAAAAACTACAGAGGGATCATGGC
AACCCCCGCCGAGGACGCCCTAGCACGGCAACAAAATCTCGACATACAGA
AGCATCTTTCCGTGGGCAGGAACCCTCGTGGCATCCCCACTGCGGCCTTC
ATTGTGAGTATTTGACAAATACCTACATGCCCTTCCCCTTTCCCCCTCTC
TCTCCCTCCCTCCCTCCCATCCTACATCGCGGTGTGACTCACAACGTTCC
ACCACGCTGTTTAAACAGGACGATGTGGACGATTTCTTACAGAAGTTGGG
TGGGGTACCTGTGGAGACGGCCATCGGGGCTTTCAACGAGCTCTATGGGT
AAGGGAGGGGACAGAGGAGGGATGAGACGATAAACGGATAGAGGGAAGAG
GCTGTATGGGACATGTCACAAACATTTGTATTGTATGGATTCTTGTCTTC
CGTGGGTTTTGTTCTATTTCACTTCTTTTGTTCTCCTCCTTATTTGAAGC
TTGCCGTTTCACTTTGTTGTGCATGCTACCTCTCCTTTTTGCTCCATCTC
CTCGCACTTTTTTCCCAAGTCTACACCCACACCCTCTCTCTTCCTCCCTC
TCACTCTTTCTCCTCTCCTCAGTAAATACAAGCTGATGGAAAATAGCCTC
AGTCGGACCAAGATCAACATGAAGAGTAAAAAGCCAGAGATCGAAAAAAC
GTTGGAACTCGTTCGAATCCTGCAAGAGAAGCAAATGGAGGGAGAAAGCC
TCTCCACGCATTACAACCTAGGTAGGTTTCCTTAATTTCCTCTATCTCCC
TCCCCTCGTCTTGTCCTCACTCCTACCCTAGGTGTCTTCCTTTTCCCCAC
CACCCTTTCTCTCTCCTTCTCGCCCTCCTTCCCTCCTTTGGTCTGGCTCT
CCACGCGCACTACGCGGATTTTCAATTGTTTTCCTTGCAGTCCAAAACCC
CTGGAGGCGACAGCAAGCTCGGTAGGTAGCCTCCCTCACACTCTTTCTTC
CTCCCTCCCTCTCTCTCTCTCCCTCCTTCCCTGTAGCTGACACTATCTAC
GCCAAAGCCACGGTGGCCTGCGACGGCCGCGTCTGTCTATGGTTGGGGGC
GAACGTCATGCTTGAATACTCGTACGAGGAGGCCGTGGGGGTGCTGGAGA
CGAGCCTTGCCAACGCCAAAGAAAAACTGGTGAGGAGGGAGGGAAAGAGG
GAGGGAGGGACGGGGCATGTCGTGTACGAGTTTAATTTAAGGGACGATAT
ACTTCTGGGGAATCAAAGGAGAAAAAAGTGCGTCATCCCTCCCTACCTTT
CCATCTCTTTTCCCCGTCCTTTCAAAACTCCCTCCATCGCTCCCTTCCTT
TATCTCTTTCAATCCCCGCCAGAAAACGACGAACGAGGACCTCGAGCACC
TCAAGAATCAGACTATCACCGTAGAAGTCAACATGGCCCGTCTCTTCAAC
CATGACGTCAAAAGGCGGAAGGCCTTGCAGCTGCAGAAGTTGGAAGGAGG
AGGAGCAGCGGGAGCAGGAGCTGGAGGAGGGAAAGTTAAGGCGAATGTGA
AGGCGTTGGCATGAGGGAGGGAGCAAGGAAACGGGGGGAGAGGGAAACGT
GTAAAAGAGAGATTAAGATATTTTCATTCAAAGGGAATCGATGTAACCCA
CAGCACCACCACCACCACCACCAGCAGCTCCTGCTGC
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Coding sequence (CDS) from alignment at chr20:193317..195353-

>NO20G00570.1 ID=NO20G00570.1|Name=NO20G00570.1|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at chr20:193317..195353- (Nannochloropsis oceanica)
ATGGCAACCCCCGCCGAGGACGCCCTAGCACGGCAACAAAATCTCGACAT
ACAGAAGCATCTTTCCGTGGGCAGGAACCCTCGTGGCATCCCCACTGCGG
CCTTCATTGACGATGTGGACGATTTCTTACAGAAGTTGGGTGGGGTACCT
GTGGAGACGGCCATCGGGGCTTTCAACGAGCTCTATGGTAAATACAAGCT
GATGGAAAATAGCCTCAGTCGGACCAAGATCAACATGAAGAGTAAAAAGC
CAGAGATCGAAAAAACGTTGGAACTCGTTCGAATCCTGCAAGAGAAGCAA
ATGGAGGGAGAAAGCCTCTCCACGCATTACAACCTAGCTGACACTATCTA
CGCCAAAGCCACGGTGGCCTGCGACGGCCGCGTCTGTCTATGGTTGGGGG
CGAACGTCATGCTTGAATACTCGTACGAGGAGGCCGTGGGGGTGCTGGAG
ACGAGCCTTGCCAACGCCAAAGAAAAACTGAAAACGACGAACGAGGACCT
CGAGCACCTCAAGAATCAGACTATCACCGTAGAAGTCAACATGGCCCGTC
TCTTCAACCATGACGTCAAAAGGCGGAAGGCCTTGCAGCTGCAGAAGTTG
GAAGGAGGAGGAGCAGCGGGAGCAGGAGCTGGAGGAGGGAAAGTTAAGGC
GAATGTGAAGGCGTTGGCATGA
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Synonyms
Publications