NO20G00530, NO20G00530 (gene) Nannochloropsis oceanica

Overview
NameNO20G00530
Unique NameNO20G00530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3419
Alignment locationchr20:181174..184592 +

Link to JBrowse

Properties
Property NameValue
DescriptionPentatricopeptide repeat containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:181174..184592 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
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BLAST of NO20G00530 vs. NCBI_GenBank
Match: EWM22169.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 241.9 bits (616), Expect = 8.700e-60
Identity = 207/591 (35.03%), Postives = 264/591 (44.67%), Query Frame = 0 
Query:  145 PSPSNPPSVLADCASMTPLQRQLVWGEEELRLRIREVEEDVDTLKATARALCLKGKWEEAEVVVKKLYLDRSVEEEEEGGLKRTWRRSMGTGQRMEYSERRRVAARKRKEMRRVERVGVPLSLAFLHVCRAEEAWPSALSFVDEVLLEKETEKGAGEEG---------KEEGLLMPSTILPLKKELAQEALHICVGAGDIRRALEITRRAEAG-ESALLLDLALQACAMHKKR-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGVTVLTLIREARCR-----------------------------------TPXXXXXXXXXXISP-------SQRGWEAASSALTAAGPLRL----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLYEKAIRASVDEGQEAEALLLYREGVRWATVEG--EGGKERTVXXXXXXXXXXXXXXXXGAIPVAIHEAALEAYARRGLWRPALEVLDGLRKEE------MDGRREGGPSVACFNAAIRACCVGNEWERGVGLLRRMEAAGQEADEETYGVILQAFARAGEWKGSLKLLEYIEK 653
            P+P+ PP++L +   +T  QRQLVWGEEELRLRIREVE  V+TL+ATA ALC +G+W EAE VV +LY    +  E +      W R    G    Y  R              ERVG  +S A+L  C    AWP+ALSF+D+ LL +      GE G                P+  L L   +A+ A  +C GAGD  R L + R  +       +LD+A+ AC   ++R                                          +GVTVL+++REAR R                                    P            P       S +GWE A+ AL +A  LRL                                                 LLY +AI+ASV   + AEALLLY E +  A VEG  EGG++ T                   +P++IHEAAL A+A RG W+ AL +LD LRKE+               S+ACFN+AIRACCVG+EWERGVGLLRRME AG  A+EETYGVILQAF R G W+GSLKL+EY+ K
Sbjct:   28 PTPA-PPAILTEKNRVTRPQRQLVWGEEELRLRIREVEGAVETLRATALALCREGRWVEAEKVVLRLYRGNDLTGERK--RSEAWDRDGVEG----YGGRN----------GGFERVGSEVSHAYLKACITARAWPAALSFLDQ-LLSRNVVGSTGEAGXXXXXXXXXXXXXXXAPALAL-LDVRVAEAAWEVCGGAGDASRILAVLRCTQPHCLGPAVLDVAMDACLACQRRLLSSLPPSAGAGAAKGGEQRTLRQDTQSRTSVRALEASCPSQVGVTVLSVLREARKRIHRGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAPKASTGSAEGGALPSHPPALLSSQGWETAAEALPSAAFLRLLLGEAKLAAASMAPVHVDPAAPGRASCPASPSVPPLSPPSSLSFRPPMLLLYARAIQASVVAKEIAEALLLYNEAL--ALVEGGMEGGRKGTAVALRSSNSGSDGSSE--RLPLSIHEAALAAHAVRGDWQQALGILDRLRKEDGXXXXXXXXXXXXXXSLACFNSAIRACCVGDEWERGVGLLRRMERAGVRANEETYGVILQAFRRTGAWEGSLKLVEYLGK 595
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BLAST of NO20G00530 vs. NCBI_GenBank
Match: EWM22179.1 (hypothetical protein Naga_100153g13 [Nannochloropsis gaditana])

HSP 1 Score: 126.7 bits (317), Expect = 4.100e-25
Identity = 85/240 (35.42%), Postives = 108/240 (45.00%), Query Frame = 0 
Query:  743 PSSWAGPSRQEEAFQLVTALMDSQTPIALETYEHACQALLSLXXXXXXXXXXXXXXXXXXXXXXYETALRDVYRHGVAAGVLPSSPPSLTSSSXXPPSVDLRGLRPTLAKVAMVSALESLLHLHPLQNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLIIITGTGRVKGAVQRFLRTACFPPLLPQPVPYNAGRLLLPWSQIQCWKEGGGMVALS 983
            PS+  G  RQEEA +L+TALM S  PIA  TYEHAC  +LSL                      Y+  LR +Y HGVAAGVLPS        +  P  ++LRGL PTLA++A+V  LE+                                                               ++IITG GR+K  VQ+FLR AC P L  QP+PYN GRL+LP +++Q W E  G+  LS
Sbjct:    3 PSTGGGRERQEEAHRLITALMASNVPIARATYEHACY-MLSLHDATDGPAGTRGSSEPGPSSRGYKDTLRRIYGHGVAAGVLPS-----IGEASAPAVLELRGLGPTLARLALVMFLET----------------------------------------WGQIAFTKDAEASPGLSASQPASIVIITGPGRLKATVQQFLRRACLPSLRTQPLPYNPGRLILPLTEVQHWHERAGIARLS 196
The following BLAST results are available for this feature:
BLAST of NO20G00530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22169.18.700e-6035.03Pentatricopeptide repeat containing protein [Nanno... [more]
EWM22179.14.100e-2535.42hypothetical protein Naga_100153g13 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002586NSK002586Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00530.1NO20G00530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|88205gene_6268Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100153g13gene8268Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00530.1NO20G00530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00530 ID=NO20G00530|Name=NO20G00530|organism=Nannochloropsis oceanica|type=gene|length=3419bp
AGATAATTCGTCGTTGTCTCCATGTCAAGCTGATTACCGGAGTGATCAAG
GGCGCCAGTCAGTCCAGCTCCAGGCGCGGTTTGAGGAAGGAGATGGTAGC
TCCGGCTCGGACAGGGTCATCATGCCTTCATTTCTTCCGACTCTTGCTCC
TCCTCCTCTTCTTGCAGTCTCCTCAGGCTTTTGGGCCTCCATCGTTTACC
ATCACGGTCACATGTATGAGAAGCAGCAGTAGCAACAGCGGCAAAAGTAG
CAGCAGCAGTAGGAGGAGAAGGCGGTCCAAGACAATGCTGAGCATATCAT
CAGCCGGGGCCATCCCATCCTCTTCCTTTTCCTCCCCCTCATCCTCATCG
ACTGGCAACAGCAACAACCCCCACGAGGGTAACAGTCTATCTTCGTCTCC
GTCCTACACAATTCAAGCTTCAGCCACCGCTGCCGCTGTCCCCGGTGGTG
GTGGCGGCAGCATCCACATGCCGCGCATCAGATCCAGCAGCAGTTGCAGT
GGACAGTACCAGAGTGGGAGCCTTCCTTCGCCATCAAACCCTCCGTCTGT
CCTTGCTGATTGTGCCTCAATGACACCTCTCCAAAGGCAATTAGTCTGGG
GGGAGGAAGAGTTGAGATTACGCATAAGAGAGGTAGAAGAAGACGTGGAT
ACGCTAAAAGCAACGGCCCGTGCGTTGTGTTTGAAGGGGAAATGGGAGGA
GGCAGAGGTGGTGGTGAAGAAGCTTTACTTGGATCGAAGCGTAGAGGAAG
AGGAGGAGGGAGGGTTGAAAAGGACGTGGAGGAGGAGCATGGGCACGGGG
CAACGGATGGAGTACAGCGAAAGGCGAAGGGTGGCGGCAAGGAAGAGGAA
GGAAATGCGACGAGTCGAGAGAGTGGGCGTACCACTAAGCCTGGCTTTTC
TGCATGTGTGTCGCGCGGAAGAGGCGTGGCCGTCAGCCTTATCGTTCGTG
GACGAGGTGCTTCTGGAGAAGGAGACAGAGAAGGGCGCGGGGGAGGAGGG
GAAGGAGGAAGGGCTGCTGATGCCATCGACCATACTACCATTGAAAAAAG
AGCTCGCGCAGGAAGCGCTTCACATATGCGTGGGAGCGGGAGATATTCGG
AGGGCATTGGAAATTACCAGACGAGCAGAAGCTGGCGAGTCTGCTTTGCT
ACTAGATTTAGCTCTGCAGGCGTGCGCGATGCACAAGAAACGACCTCAGT
CCTCCCCTTCCTCCGCCCCTCCCTCAGCCCCTTTCTCCTCCTCTTCCTTC
CTACAACCGCCATTACCTCCTCCCGCAGCAACAACAGAAGAAACCACATT
AGGTGTCACCGTCTTAACCTTGATTAGAGAAGCCCGGTGTAGGACACCAA
GAACACCAGCGGCACCAGCAGCACGCGCAATAAGCCCCTCTCAGAGAGGT
TGGGAGGCAGCGTCGTCCGCCCTGACAGCTGCAGGGCCCTTACGGCTGCT
GCTGAGTGAAGCCAAGCGAGTAGCAGCAGTGGCAGCAGCAGTAGGTAGCA
GCCCTTCCTCTTCGTTGCCCTCCTCCTCGTCCTCCCCACCCATGTGGTTG
CTGTACGAGAAGGCTATTAGGGCCAGTGTGGACGAGGGGCAGGAGGCCGA
GGCGTTGTTGCTCTACCGCGAAGGGGTGCGCTGGGCGACAGTGGAGGGAG
AGGGAGGGAAGGAGAGGACAGTTAGCAGCACCACCAGCCCTACCACCAGC
AGTAGTAGCAGCAGCAGCTACGGTGCAATACCCGTTGCGATTCACGAGGC
TGCATTGGAAGCTTACGCCAGACGCGGACTGTGGCGCCCCGCCTTAGAGG
TGCTCGACGGGTTGAGGAAGGAAGAGATGGATGGACGGAGGGAGGGAGGG
CCGTCCGTGGCCTGTTTCAATGCGGCGATTCGGGCATGTTGTGTGGGAAA
TGAGTGGGAGAGAGGGGTGGGGCTGCTAAGGCGAATGGAAGCAGCAGGGC
AAGAAGCAGACGAAGAAACGTATGGTGTGATATTGCAGGCATTTGCGCGC
GCAGGGGAATGGAAAGGCAGCCTCAAGCTGCTCGAGTACATAGAGAAAAA
GACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGACCCCGGCGT
TGGCAAGGGCGGCTGCGAATATCTGCGTTAGGGCACAGAGATACGAAGAA
GCAAGGGCCCTAGTCGCATCCGTCTTGCACCGGGGCAAGGAAACCTCTTC
TTCCTTCACTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTTCCT
CCGTGGCCCTACCGGCGATCCAGCCCGCCTTCCTGGCCCTTGGGCTGTGG
TCGCTCGCCTGCGCCACCCCATCTTCATGGGCCGGTCCTTCTCGACAAGA
GGAAGCCTTTCAATTGGTTACCGCCCTCATGGACTCCCAAACACCAATAG
CCCTCGAAACGTACGAACATGCGTGCCAAGCTCTCCTTTCCCTGGGCGGT
GGGAGCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAG
CAGCCAAAAGTATGAAACCGCCCTCCGAGATGTCTACAGACACGGAGTAG
CTGCGGGCGTGCTTCCTTCTTCCCCTCCCTCTCTTACTTCTTCCTCCTCC
TCTCCTCCTTCTGTAGATCTACGAGGCCTCCGTCCAACCCTAGCGAAAGT
AGCGATGGTATCAGCCCTCGAATCCTTACTCCACCTGCACCCTCTCCAGA
ATAAGAAGGAGGAAGGAAGGGAAGAAAGGTGTGTCATGACTGCTTCCTCC
TCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTTTTCCTCCTTTTTCTTCCCCTACTCCTCTTCCTCCTCCC
ATGCACCATCACCACTCATCATCATCACGGGCACTGGCCGAGTGAAAGGG
GCAGTGCAACGTTTCTTGCGGACGGCGTGCTTCCCTCCTTTGTTGCCTCA
ACCCGTGCCGTACAACGCGGGTCGGTTGCTTTTGCCTTGGTCTCAGATTC
AATGCTGGAAAGAAGGAGGAGGAATGGTGGCCTTGTCAACTTCCGTGGGC
GTGGAGAAGGGGAAGGTTGGAGGAGGAAATGGGAAGGGAGGAGGAGATGG
AGGAGGAGAGGGAGGAGGAGGAGGAGGAAGAGGAAGAAGAGGAGGAGGAG
GATGAGGAGGAGGAAGAGAAGGAGGAGGGGAAAGGAAGGCTAAGCGGCGC
CCAACGCTTTGGGTCGCAGGTGACCCGGAAATAGAGGAGTAGAAAGAGTT
AAACAGTGTGTACATAAGAGGGTAATTAATTTGATCACAGCAAAGAGAGT
GTGTGGAAGCCGGCACGAGTGCACACACACTATCGAGGTGATAGGAGAAG
GGAGGAAGAGCTCCCTGCCATTTCTCTCTTTGAGGCAGGAATAATGAAAC
AAGGCTCCCATATGTAGGA
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protein sequence of NO20G00530.1

>NO20G00530.1-protein ID=NO20G00530.1-protein|Name=NO20G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1021bp
MVAPARTGSSCLHFFRLLLLLLFLQSPQAFGPPSFTITVTCMRSSSSNSG
KSSSSSRRRRRSKTMLSISSAGAIPSSSFSSPSSSSTGNSNNPHEGNSLS
SSPSYTIQASATAAAVPGGGGGSIHMPRIRSSSSCSGQYQSGSLPSPSNP
PSVLADCASMTPLQRQLVWGEEELRLRIREVEEDVDTLKATARALCLKGK
WEEAEVVVKKLYLDRSVEEEEEGGLKRTWRRSMGTGQRMEYSERRRVAAR
KRKEMRRVERVGVPLSLAFLHVCRAEEAWPSALSFVDEVLLEKETEKGAG
EEGKEEGLLMPSTILPLKKELAQEALHICVGAGDIRRALEITRRAEAGES
ALLLDLALQACAMHKKRPQSSPSSAPPSAPFSSSSFLQPPLPPPAATTEE
TTLGVTVLTLIREARCRTPRTPAAPAARAISPSQRGWEAASSALTAAGPL
RLLLSEAKRVAAVAAAVGSSPSSSLPSSSSSPPMWLLYEKAIRASVDEGQ
EAEALLLYREGVRWATVEGEGGKERTVSSTTSPTTSSSSSSSYGAIPVAI
HEAALEAYARRGLWRPALEVLDGLRKEEMDGRREGGPSVACFNAAIRACC
VGNEWERGVGLLRRMEAAGQEADEETYGVILQAFARAGEWKGSLKLLEYI
EKKTEGGREGGREGGVTPALARAAANICVRAQRYEEARALVASVLHRGKE
TSSSFTSSSSSSSSSSSPSSVALPAIQPAFLALGLWSLACATPSSWAGPS
RQEEAFQLVTALMDSQTPIALETYEHACQALLSLGGGSSTSTSTSTSTST
STSSQKYETALRDVYRHGVAAGVLPSSPPSLTSSSSSPPSVDLRGLRPTL
AKVAMVSALESLLHLHPLQNKKEEGREERCVMTASSSSFSSSSSSSFSSS
SSSSSSFSSFFFPYSSSSSHAPSPLIIITGTGRVKGAVQRFLRTACFPPL
LPQPVPYNAGRLLLPWSQIQCWKEGGGMVALSTSVGVEKGKVGGGNGKGG
GDGGGEGGGGGGRGRRGGGG*
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Synonyms
Publications