NO20G00500, NO20G00500 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO20G00500 vs. NCBI_GenBank
Match: XP_005853464.1 (light-harvesting protein [Nannochloropsis gaditana CCMP526] >EKU22896.1 light-harvesting protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 360.1 bits (923), Expect = 4.400e-96 Identity = 180/202 (89.11%), Postives = 191/202 (94.55%), Query Frame = 0 Query: 1 MKLLSFACLLGAATAFVPSMPTTTRTRGAVRMMAEKSKAVPFLPRPAALDGSVVGDVGFDPVGFTSWLPLSYLQEAEIKHCRIAMLATLGWIVADFVHLPGAVHEVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLNFAKDEKSLKKMQLSELKNGRLAMLAFSGIVTQAALTGHAFPYM 203 MKLLSFACL+GAA AFVP MP TTR RGAV MMAEKSK++PFLPRP ALDG+ GDVGFDPVGFTSWLPL+YLQEAEIKHCRIAMLATLGWIVADFVHLPG VH VSSLAAHDVAVKSGALAQILIWTSIAEAISV+AISQMLEGSGRQPGDFKFDPL FAKDE++LKK+QL+ELKNGRLAMLAFSGIVTQAALTGH+FPYM Sbjct: 1 MKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 202
BLAST of NO20G00500 vs. NCBI_GenBank
Match: EWM22167.1 (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 360.1 bits (923), Expect = 4.400e-96 Identity = 180/202 (89.11%), Postives = 191/202 (94.55%), Query Frame = 0 Query: 1 MKLLSFACLLGAATAFVPSMPTTTRTRGAVRMMAEKSKAVPFLPRPAALDGSVVGDVGFDPVGFTSWLPLSYLQEAEIKHCRIAMLATLGWIVADFVHLPGAVHEVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLNFAKDEKSLKKMQLSELKNGRLAMLAFSGIVTQAALTGHAFPYM 203 MKLLSFACL+GAA AFVP MP TTR RGAV MMAEKSK++PFLPRP ALDG+ GDVGFDPVGFTSWLPL+YLQEAEIKHCRIAMLATLGWIVADFVHLPG VH VSSLAAHDVAVKSGALAQILIWTSIAEAISV+AISQMLEGSGRQPGDFKFDPL FAKDE++LKK+QL+ELKNGRLAMLAFSGIVTQAALTGH+FPYM Sbjct: 70 MKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 271
BLAST of NO20G00500 vs. NCBI_GenBank
Match: CEM15583.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 206.5 bits (524), Expect = 8.100e-50 Identity = 101/169 (59.76%), Postives = 130/169 (76.92%), Query Frame = 0 Query: 35 EKSKAVPFLPRPAALDGSVVGDVGFDPVGFTSWLPLSYLQEAEIKHCRIAMLATLGWIVADFVHLPGAVHEVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLNFAKDE--KSLKKMQLSELKNGRLAMLAFSGIVTQAALTGHAFPY 202 E SK++PF+PRP LDG++ D GFDP GF++WL L + +EAEIKH R+ MLAT+G+I A++ LPG VH+VSSL AH+ AV+ GA++QIL+W S AE S IA+ QM +GSGRQPG+F FDPL F K++ + +K MQ E+KNGRLAMLA SGI+TQAALT FPY Sbjct: 67 EMSKSIPFMPRPYRLDGTMAADDGFDPFGFSNWLDLRWAREAEIKHGRLCMLATVGYIFAEYFKLPGEVHQVSSLEAHNKAVEYGAMSQILLWISFAEIFSTIAVVQMYDGSGRQPGEFGFDPLGFCKNKSPEFVKDMQKKEIKNGRLAMLAISGILTQAALTNKGFPY 235
BLAST of NO20G00500 vs. NCBI_GenBank
Match: CBJ32007.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 201.4 bits (511), Expect = 2.600e-48 Identity = 105/199 (52.76%), Postives = 142/199 (71.36%), Query Frame = 0 Query: 9 LLGAATAFVP--SMPTTTRTRGAVRMMAEKSKAVPFLPRPAALDGSVVGDVGFDPVGFTSWLPLSYLQEAEIKHCRIAMLATLGWIVADF-VHLPGAVHEVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLN-FAKDEKSLKK--MQLSELKNGRLAMLAFSGIVTQAALTGHAFPY 202 +L +A+AFVP +P + + M A KSK++PF+P+PA LDG++ GD GFDP+GF++++PL +L+EAE+KH RI LA +G+ D LPGA H V+S+AAHD AV +GA+ QIL+W S EAIS +A+ QMLEGSGR PGDF FDP N +++ E + KK M+L E+ + RLAM AF G+VTQA LT FPY Sbjct: 11 VLASASAFVPPAQLPRVASSNSGMSMQATKSKSLPFMPQPAKLDGTMAGDAGFDPLGFSNFIPLDFLREAELKHGRICQLAVVGFAATDLGFRLPGAEHAVASIAAHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPY 209
BLAST of NO20G00500 vs. NCBI_GenBank
Match: KOO28459.1 (protein fucoxanthin chlorophyll a c protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 190.3 bits (482), Expect = 6.000e-45 Identity = 93/163 (57.06%), Postives = 120/163 (73.62%), Query Frame = 0 Query: 42 FLPRPAALD--GSVVGDVGFDPVGFTSWLPLSYLQEAEIKHCRIAMLATLGWIVADFVHLPGAVHEVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLNFAKDEKSLKKMQLSELKNGRLAMLAFSGIVTQAALTGHAFPYM 203 FL R A+L G VGDVGFDPVG+T P+ +L+EAEIKH R+AMLA LG++ DF HLPG + ++L AHD V SGA++Q+L+W + E IS I+I QML GSGR+PGDF FDP+ F D LK++Q+ EL NGRLAM AF G+VTQ+ LTG++FPY+ Sbjct: 51 FLVRRASLGPVGKYVGDVGFDPVGWTEIFPIEWLREAEIKHSRVAMLAFLGFVFTDFYHLPG--FDYTTLEAHDATVASGAMSQLLLWIGLLEVISTISIDQMLRGSGREPGDFGFDPIGFGSDPVKLKELQMKELANGRLAMFAFGGVVTQSVLTGNSFPYL 211
BLAST of NO20G00500 vs. NCBI_GenBank
Match: ABA55528.1 (chloroplast light harvesting protein isoform 12 [Isochrysis galbana]) HSP 1 Score: 182.6 bits (462), Expect = 1.200e-42 Identity = 87/164 (53.05%), Postives = 116/164 (70.73%), Query Frame = 0 Query: 39 AVPFLPRPAALDGSVVGDVGFDPVGFTSWLPLSYLQEAEIKHCRIAMLATLGWIVADFVHLPGAVHEVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLNFAKDEKSLKKMQLSELKNGRLAMLAFSGIVTQAALTGHAFPYM 203 ++PFL + LDG VGD+GFDPVGF+ LP+ +L+EAE+KHCR+AMLAT+G++ DF H+ G + ++L AHD V SGA++Q+L+W + E I I Q L GSGR GDF FDPL F D + +Q+ EL NGRLAM AFSG+VTQ+ LTG+ FPY+ Sbjct: 70 SMPFLVKRKTLDG-YVGDIGFDPVGFSEILPMDWLREAELKHCRVAMLATVGFVFTDFFHISG--FDFTTLEAHDACVASGAMSQLLLWLGLLEVFGFIGIDQTLRGSGRAAGDFSFDPLGFGSDPAKMATLQMKELANGRLAMFAFSGMVTQSVLTGNDFPYL 230
BLAST of NO20G00500 vs. NCBI_GenBank
Match: XP_009038907.1 (putative plastid light harvesting protein isoform 51 [Aureococcus anophagefferens] >EGB06328.1 putative plastid light harvesting protein isoform 51 [Aureococcus anophagefferens]) HSP 1 Score: 181.4 bits (459), Expect = 2.800e-42 Identity = 97/197 (49.24%), Postives = 132/197 (67.01%), Query Frame = 0 Query: 7 ACLLGAATAFVPSMPTTTRTRGAVRMMAEKSKAVPFLPRPAALDGSVVGDVGFDPVGFTSWLPLSYLQEAEIKHCRIAMLATLGWIVAD--FVHLPGAVHEVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLNFAKDEKSLKKMQLSELKNGRLAMLAFSGIVTQAALTGHAFPY 202 A LL A ++ ++ M EKS ++PFL L G + G+ GFDP+G + W+P+ +L+E+E+KH R+ MLATLG++ D FV LPG +H+VSS+ AHDVAV G++ QI I+ +I E I +AI +ML+GSGR+PGDF FDPL + +MQL E++NGRLAMLAF+GIVTQA LTG FPY Sbjct: 5 ALLLAATATCASALVAPVSQTTSLTSMHEKSASMPFLEASPNLKGYIGGEKGFDPLGLSYWVPMDWLRESELKHGRVCMLATLGFVATDMGFV-LPGEMHQVSSIGAHDVAVAQGSMTQITIFIAICECIGYLAILEMLDGSGRKPGDFGFDPLQIGGGDD--PEMQLREIENGRLAMLAFAGIVTQAVLTGKGFPY 198
BLAST of NO20G00500 vs. NCBI_GenBank
Match: XP_005778485.1 (light harvesting protein [Emiliania huxleyi CCMP1516] >EOD26056.1 light harvesting protein [Emiliania huxleyi CCMP1516]) HSP 1 Score: 181.4 bits (459), Expect = 2.800e-42 Identity = 85/152 (55.92%), Postives = 109/152 (71.71%), Query Frame = 0 Query: 51 GSVVGDVGFDPVGFTSWLPLSYLQEAEIKHCRIAMLATLGWIVADFVHLPGAVHEVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLNFAKDEKSLKKMQLSELKNGRLAMLAFSGIVTQAALTGHAFPYM 203 G++VGDVGFDP+GFT LPL++L+EAEIKHCR AMLAT G+ DF H PG + ++L AHD + G ++Q+L+W + E S I+I QML GSGR+PGD+ FDPL FA D +Q+ EL NGRLAM AF G VTQ+ LTG+ FPY+ Sbjct: 63 GALVGDVGFDPLGFTEILPLAWLREAEIKHCRTAMLATFGFAFTDFWHFPG--FDYTTLEAHDAVIAQGGMSQLLLWIGLLEVFSAISIDQMLRGSGREPGDYGFDPLGFASDPAKKADLQMKELANGRLAMFAFGGFVTQSVLTGNTFPYL 212
BLAST of NO20G00500 vs. NCBI_GenBank
Match: CAC87422.1 (light-harvesting protein [Galdieria sulphuraria]) HSP 1 Score: 179.5 bits (454), Expect = 1.100e-41 Identity = 88/164 (53.66%), Postives = 118/164 (71.95%), Query Frame = 0 Query: 33 MAEKSKAVPFLPRPAALDGSVVGDVGFDPVGFTSWLPLSYLQEAEIKHCRIAMLATLGWIVADFVHLPGAVHEVSS-LAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLNFAKDEKSLKKMQLSELKNGRLAMLAFSGIVTQAALT 196 + +KSKA+PFL RP ALDGS+VGDVGFDP+ +S+L L +L+E+E+KHCRIAMLA +GW V + HLP ++ S A + +G + QI++WTS E IS A+ QML+GSGR+PG F FDPL K+ + K+ QLSELKNGRLAM+A G++ Q+ LT Sbjct: 42 LPQKSKAIPFLDRPPALDGSMVGDVGFDPLNISSYLDLRWLRESELKHCRIAMLAVVGWFVQEVFHLPNXIYSASDPTEAFWKTLATGPMGQIVLWTSFFEIISTPAVIQMLQGSGREPGYFGFDPLGLGKNPQLYKRFQLSELKNGRLAMIAIGGLIHQSFLT 205
BLAST of NO20G00500 vs. NCBI_GenBank
Match: XP_005708003.1 (light-harvesting complex protein [Galdieria sulphuraria] >EME31483.1 light-harvesting complex protein [Galdieria sulphuraria]) HSP 1 Score: 179.5 bits (454), Expect = 1.100e-41 Identity = 95/187 (50.80%), Postives = 129/187 (68.98%), Query Frame = 0 Query: 10 LGAATAFVPSMPTTTRTRGAVRMMAEKSKAVPFLPRPAALDGSVVGDVGFDPVGFTSWLPLSYLQEAEIKHCRIAMLATLGWIVADFVHLPGAVHEVS-SLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLNFAKDEKSLKKMQLSELKNGRLAMLAFSGIVTQAALT 196 L ++ +FVP + R A + +KSKA+PFL RP ALDGS+VGDVGFDP+ +S+L L +L+E+EIKHCRIAMLA +GW V + HLP ++ S A + +G + QI++WTS+ E IS A+ QML+GSGR+PG F FDPL K+ + K+ QLSELKNGRLAM+A G++ Q+ LT Sbjct: 31 LRSSRSFVPRNLCSLR---ASASLPQKSKAIPFLDRPPALDGSMVGDVGFDPLNISSYLDLRWLRESEIKHCRIAMLAVVGWFVQEVYHLPNEIYSSSVPTEAFWKTLVTGPMGQIVLWTSLFEMISTPAVIQMLQGSGREPGYFGFDPLGLGKNPELYKRFQLSELKNGRLAMIAIGGLIHQSFLT 214 The following BLAST results are available for this feature:
BLAST of NO20G00500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G00500 ID=NO20G00500|Name=NO20G00500|organism=Nannochloropsis oceanica|type=gene|length=2007bpback to top protein sequence of NO20G00500.1 >NO20G00500.1-protein ID=NO20G00500.1-protein|Name=NO20G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=203bpback to top Synonyms
Publications
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