NO20G00500.1, NO20G00500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00500.1
Unique NameNO20G00500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1494
Alignment locationchr20:171483..173489 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:171483..173489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G00500.1 vs.
Match: XP_005853464.1 (light-harvesting protein [Nannochloropsis gaditana CCMP526]; EKU22896.1 light-harvesting protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 360.1 bits (923), Expect = 4.400e-96
Identity = 180/202 (89.11%), Postives = 191/202 (94.55%), Query Frame = 0 
Query:    1 MKLLSFACLLGAATAFVPSMPTTTRTRGAVRMMAEKSKAVPFLPRPAALDGSVVGDVGFDPVGFTSWLPLSYLQEAEIKHCRIAMLATLGWIVADFVHLPGAVHEVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLNFAKDEKSLKKMQLSELKNGRLAMLAFSGIVTQAALTGHAFPYM 203
            MKLLSFACL+GAA AFVP MP TTR RGAV MMAEKSK++PFLPRP ALDG+  GDVGFDPVGFTSWLPL+YLQEAEIKHCRIAMLATLGWIVADFVHLPG VH VSSLAAHDVAVKSGALAQILIWTSIAEAISV+AISQMLEGSGRQPGDFKFDPL FAKDE++LKK+QL+ELKNGRLAMLAFSGIVTQAALTGH+FPYM
Sbjct:    1 MKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 202
The following BLAST results are available for this feature:
BLAST of NO20G00500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853464.14.400e-9689.11light-harvesting protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00500NO20G00500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00500.1NO20G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00500.1.cds1NO20G00500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00500.1.cds2NO20G00500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00500.1.cds3NO20G00500.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00500.1.cds4NO20G00500.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00500.1 ID=NO20G00500.1|Name=NO20G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp
AAACACAGACTTCTCTCCACCCACAACCACCACCCCGCAAAACATGAAGC
TCTTGTCCTTCGCTTGCCTCCTCGGCGCAGCCACTGCCTTCGTCCCCTCC
ATGCCTACGACGACCCGCACCCGCGGCGCCGTCCGCATGATGGCGGAGAA
ATCCAAGGCTGTCCCTTTCCTGCCCCGGCCCGCGGCGCTTGACGGCTCGG
TTGTTGGGGATGTTGGCTTTGACCCGGTGGGGTTCACCAGCTGGTTGCCC
CTTTCTTACTTGCAGGAGGCCGAGATCAAGCACTGCCGCATTGCCATGCT
TGCCACCCTGGGCTGGATCGTCGCGGACTTCGTACATTTACCTGGCGCTG
TCCACGAGGTCTCCTCTCTGGCCGCCCACGACGTGGCCGTCAAGTCCGGT
GCCCTCGCCCAGATTTTGATTTGGACCTCTATCGCCGAGGCTATCTCCGT
CATTGCCATTTCCCAGATGCTCGAGGGATCTGGCCGCCAGCCCGGTGACT
TCAAGTTCGATCCCCTCAACTTTGCCAAGGACGAAAAGAGCCTGAAGAAG
ATGCAGCTCAGCGAGCTCAAGAACGGACGCCTGGCCATGCTCGCCTTCTC
CGGCATTGTCACCCAGGCCGCCCTCACGGGCCATGCCTTCCCCTACATGT
AAACGTCGACTCCCGCCCTGTCAACCGATTTATCCTTCTCGTCTCCTTCC
TCTTTACAAGCCTTGTCCTCATTTGTCCTCCTTTAAGCCCTCAGCGTGGT
CACCGCAGCAGCTGGTCCCGTCGTCAAGGGCACCCGTTCGTAATGTAGCT
TTCCCTATCTTAATCACCCCCTTTTGTCGTTCCCCTCCCGTGTGTAGGGT
CTCTCCCGGACGGCTTTAATTAAAAGCCTGTGGGTCATCTACACACTGAT
GTACCCTTCCGCCCCCCTCATATTTGTTCGTGCAGTGTGTTTGTCTGTGT
CGTGGGAGTTCTGTTCAGTTCTGTTCAAGAGCGAGTGTATGACATCATGT
GGGTGTGGGCAGCTTTTCAGGAGAAAGATAGAAGGAACAGAATCAAAAGA
GACGAAAAAGAAAAAAAGAACCACAACACATGCAGTGGCGGAGTGGACTG
GAAGAAGGCACATGAAACTAGAGGAAAGCCAATGAAGAAGTACCCTGGTA
GATCTCCTTTTCTCAACTTCCATCAAAGGGCATACACGTCTCACTCTATC
TTTTGCTTTACTAATTTTCCTCATGCTGAGAAGGGGACTCCTTAAGGAAG
GGAGGGGTGGGAGTCATGTCGAAGGGACGAGCTGTAACGGCTGGCCCAAC
GTCTGCTTAACGGAACTTAACGCCATTGCTCGCTTGGCCTCTCTTGTTTT
TGGAGGCATGTCTGCCACACAGAAGCACCCCTTTATGGAGGACACCCTCA
ACAACACGTATTCCTAAATTGCTGGCTTGACCTCTTGTCACCCCTCCTAA
TCGCAATCATCGCTCTTTCACTGACCGCCTTTCACAAATCAGGA
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protein sequence of NO20G00500.1

>NO20G00500.1-protein ID=NO20G00500.1-protein|Name=NO20G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MKLLSFACLLGAATAFVPSMPTTTRTRGAVRMMAEKSKAVPFLPRPAALD
GSVVGDVGFDPVGFTSWLPLSYLQEAEIKHCRIAMLATLGWIVADFVHLP
GAVHEVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQP
GDFKFDPLNFAKDEKSLKKMQLSELKNGRLAMLAFSGIVTQAALTGHAFP
YM*
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mRNA from alignment at chr20:171483..173489-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00500.1 ID=NO20G00500.1|Name=NO20G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp|location=Sequence derived from alignment at chr20:171483..173489- (Nannochloropsis oceanica)
AAACACAGACTTCTCTCCACCCACAACCACCACCCCGCAAAACATGAAGC
TCTTGTCCTTCGCTTGCCTCCTCGGCGCAGCCACTGCCTTCGTCCCCTCC
ATGCCTACGACGACCCGCACCCGCGGCGCCGTCCGCATGATGGCGGAGAA
ATCCAAGGCTGTCCCTTTCCTGCCCCGGCCCGCGGCGCTTGACGGCTCGG
TTGTTGGGGATGTTGGCTTTGACCCGGTGGGGTTCACCAGCTGGTTGCCC
CTTTCTTACTTGCAGGAGGCCGAGATCAAGCACTGCCGCATTGCCATGCT
TGCCACCCTGGGCTGGATCGTCGCGGACTTCGTACATTTACCTGGTACGT
TTTCTTTTGTATATCTAGAATGGTGTGTGTCGTGACACGGGGAGGCTAGC
TATCGTGATGAGACGATTTTTGACGTCGCCCTCCTATCCAACCAACACTT
ACCCCTCCCCTCCCTCCCTCTTTCCGATCCTCCCTTCCATTCCAATCACA
TGCAGGCGCTGTCCACGAGGTCTCCTCTCTGGCCGCCCACGACGTGGCCG
TCAAGTCCGGTGCCCTCGCCCAGATTTTGATTTGGACCTCTATCGCCGAG
GCTATCTCCGTCATTGCCATTTCCCAGATGCTCGAGGGATCTGGCCGCCA
GGTACGGTCCCCTTTTCTATCACATGTCGTCTCCTTTCCTTTGTCGTCCT
GTCGTCGGCATTTGTGTGATCACCTGTGAGTCCCTTTTTTTCCTTTTCTC
ACTCTAGTCTCGACGCCGTTTACCCACCACTCACTCCTCCTTCCCTCCCT
CCCTCCCCTTTTCCCCACACTGAACATCTCAGCCCGGTGACTTCAAGTTC
GATCCCCTCAACTTTGCCAAGGACGAAAAGAGCCTGAAGAAGATGCAGCT
CAGCGAGCTCAAGAACGGACGCCTGGCCATGGTACGGTCCCGTAAGGGAG
CTATTTCCCCCTTTTTTCTGTTTTGTGATTGCGCTGCCTGGCTGCTTGCT
TCACATGAGTATGAAGAAATCCATTAGTATTCAGATTTCTACAGTTTGTA
CGGTAGACTTACATCTTCTCCTCTCCCCCCACCCCTCTTCCCTCTTTATC
AGCTCGCCTTCTCCGGCATTGTCACCCAGGCCGCCCTCACGGGCCATGCC
TTCCCCTACATGTAAACGTCGACTCCCGCCCTGTCAACCGATTTATCCTT
CTCGTCTCCTTCCTCTTTACAAGCCTTGTCCTCATTTGTCCTCCTTTAAG
CCCTCAGCGTGGTCACCGCAGCAGCTGGTCCCGTCGTCAAGGGCACCCGT
TCGTAATGTAGCTTTCCCTATCTTAATCACCCCCTTTTGTCGTTCCCCTC
CCGTGTGTAGGGTCTCTCCCGGACGGCTTTAATTAAAAGCCTGTGGGTCA
TCTACACACTGATGTACCCTTCCGCCCCCCTCATATTTGTTCGTGCAGTG
TGTTTGTCTGTGTCGTGGGAGTTCTGTTCAGTTCTGTTCAAGAGCGAGTG
TATGACATCATGTGGGTGTGGGCAGCTTTTCAGGAGAAAGATAGAAGGAA
CAGAATCAAAAGAGACGAAAAAGAAAAAAAGAACCACAACACATGCAGTG
GCGGAGTGGACTGGAAGAAGGCACATGAAACTAGAGGAAAGCCAATGAAG
AAGTACCCTGGTAGATCTCCTTTTCTCAACTTCCATCAAAGGGCATACAC
GTCTCACTCTATCTTTTGCTTTACTAATTTTCCTCATGCTGAGAAGGGGA
CTCCTTAAGGAAGGGAGGGGTGGGAGTCATGTCGAAGGGACGAGCTGTAA
CGGCTGGCCCAACGTCTGCTTAACGGAACTTAACGCCATTGCTCGCTTGG
CCTCTCTTGTTTTTGGAGGCATGTCTGCCACACAGAAGCACCCCTTTATG
GAGGACACCCTCAACAACACGTATTCCTAAATTGCTGGCTTGACCTCTTG
TCACCCCTCCTAATCGCAATCATCGCTCTTTCACTGACCGCCTTTCACAA
ATCAGGA
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Coding sequence (CDS) from alignment at chr20:171483..173489-

>NO20G00500.1 ID=NO20G00500.1|Name=NO20G00500.1|organism=Nannochloropsis oceanica|type=CDS|length=609bp|location=Sequence derived from alignment at chr20:171483..173489- (Nannochloropsis oceanica)
ATGAAGCTCTTGTCCTTCGCTTGCCTCCTCGGCGCAGCCACTGCCTTCGT
CCCCTCCATGCCTACGACGACCCGCACCCGCGGCGCCGTCCGCATGATGG
CGGAGAAATCCAAGGCTGTCCCTTTCCTGCCCCGGCCCGCGGCGCTTGAC
GGCTCGGTTGTTGGGGATGTTGGCTTTGACCCGGTGGGGTTCACCAGCTG
GTTGCCCCTTTCTTACTTGCAGGAGGCCGAGATCAAGCACTGCCGCATTG
CCATGCTTGCCACCCTGGGCTGGATCGTCGCGGACTTCGTACATTTACCT
GGCGCTGTCCACGAGGTCTCCTCTCTGGCCGCCCACGACGTGGCCGTCAA
GTCCGGTGCCCTCGCCCAGATTTTGATTTGGACCTCTATCGCCGAGGCTA
TCTCCGTCATTGCCATTTCCCAGATGCTCGAGGGATCTGGCCGCCAGCCC
GGTGACTTCAAGTTCGATCCCCTCAACTTTGCCAAGGACGAAAAGAGCCT
GAAGAAGATGCAGCTCAGCGAGCTCAAGAACGGACGCCTGGCCATGCTCG
CCTTCTCCGGCATTGTCACCCAGGCCGCCCTCACGGGCCATGCCTTCCCC
TACATGTAA
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Synonyms
Publications