Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr20 genome chr20:171483..173489 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G00500.1 vs.
Match: XP_005853464.1 (light-harvesting protein [Nannochloropsis gaditana CCMP526]; EKU22896.1 light-harvesting protein [Nannochloropsis gaditana CCMP526])
HSP 1 Score: 360.1 bits (923), Expect = 4.400e-96
Identity = 180/202 (89.11%), Postives = 191/202 (94.55%), Query Frame = 0
Query: 1 MKLLSFACLLGAATAFVPSMPTTTRTRGAVRMMAEKSKAVPFLPRPAALDGSVVGDVGFDPVGFTSWLPLSYLQEAEIKHCRIAMLATLGWIVADFVHLPGAVHEVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLNFAKDEKSLKKMQLSELKNGRLAMLAFSGIVTQAALTGHAFPYM 203
MKLLSFACL+GAA AFVP MP TTR RGAV MMAEKSK++PFLPRP ALDG+ GDVGFDPVGFTSWLPL+YLQEAEIKHCRIAMLATLGWIVADFVHLPG VH VSSLAAHDVAVKSGALAQILIWTSIAEAISV+AISQMLEGSGRQPGDFKFDPL FAKDE++LKK+QL+ELKNGRLAMLAFSGIVTQAALTGH+FPYM
Sbjct: 1 MKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADFVHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPYM 202
The following BLAST results are available for this feature:
BLAST of NO20G00500.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 Expect = 4.40e-96 / Id = 89.11 Sequence XP_005853464.1
Match Name E-value Identity Description
XP_005853464.1 4.400e-96 89.11 light-harvesting protein [Nannochloropsis gaditana... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO20G00500.1 ID=NO20G00500.1|Name=NO20G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp AAACACAGACTTCTCTCCACCCACAACCACCACCCCGCAAAACATGAAGC TCTTGTCCTTCGCTTGCCTCCTCGGCGCAGCCACTGCCTTCGTCCCCTCC ATGCCTACGACGACCCGCACCCGCGGCGCCGTCCGCATGATGGCGGAGAA ATCCAAGGCTGTCCCTTTCCTGCCCCGGCCCGCGGCGCTTGACGGCTCGG TTGTTGGGGATGTTGGCTTTGACCCGGTGGGGTTCACCAGCTGGTTGCCC CTTTCTTACTTGCAGGAGGCCGAGATCAAGCACTGCCGCATTGCCATGCT TGCCACCCTGGGCTGGATCGTCGCGGACTTCGTACATTTACCTGGCGCTG TCCACGAGGTCTCCTCTCTGGCCGCCCACGACGTGGCCGTCAAGTCCGGT GCCCTCGCCCAGATTTTGATTTGGACCTCTATCGCCGAGGCTATCTCCGT CATTGCCATTTCCCAGATGCTCGAGGGATCTGGCCGCCAGCCCGGTGACT TCAAGTTCGATCCCCTCAACTTTGCCAAGGACGAAAAGAGCCTGAAGAAG ATGCAGCTCAGCGAGCTCAAGAACGGACGCCTGGCCATGCTCGCCTTCTC CGGCATTGTCACCCAGGCCGCCCTCACGGGCCATGCCTTCCCCTACATGT AAACGTCGACTCCCGCCCTGTCAACCGATTTATCCTTCTCGTCTCCTTCC TCTTTACAAGCCTTGTCCTCATTTGTCCTCCTTTAAGCCCTCAGCGTGGT CACCGCAGCAGCTGGTCCCGTCGTCAAGGGCACCCGTTCGTAATGTAGCT TTCCCTATCTTAATCACCCCCTTTTGTCGTTCCCCTCCCGTGTGTAGGGT CTCTCCCGGACGGCTTTAATTAAAAGCCTGTGGGTCATCTACACACTGAT GTACCCTTCCGCCCCCCTCATATTTGTTCGTGCAGTGTGTTTGTCTGTGT CGTGGGAGTTCTGTTCAGTTCTGTTCAAGAGCGAGTGTATGACATCATGT GGGTGTGGGCAGCTTTTCAGGAGAAAGATAGAAGGAACAGAATCAAAAGA GACGAAAAAGAAAAAAAGAACCACAACACATGCAGTGGCGGAGTGGACTG GAAGAAGGCACATGAAACTAGAGGAAAGCCAATGAAGAAGTACCCTGGTA GATCTCCTTTTCTCAACTTCCATCAAAGGGCATACACGTCTCACTCTATC TTTTGCTTTACTAATTTTCCTCATGCTGAGAAGGGGACTCCTTAAGGAAG GGAGGGGTGGGAGTCATGTCGAAGGGACGAGCTGTAACGGCTGGCCCAAC GTCTGCTTAACGGAACTTAACGCCATTGCTCGCTTGGCCTCTCTTGTTTT TGGAGGCATGTCTGCCACACAGAAGCACCCCTTTATGGAGGACACCCTCA ACAACACGTATTCCTAAATTGCTGGCTTGACCTCTTGTCACCCCTCCTAA TCGCAATCATCGCTCTTTCACTGACCGCCTTTCACAAATCAGGA back to top protein sequence of NO20G00500.1
>NO20G00500.1-protein ID=NO20G00500.1-protein|Name=NO20G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp MKLLSFACLLGAATAFVPSMPTTTRTRGAVRMMAEKSKAVPFLPRPAALD GSVVGDVGFDPVGFTSWLPLSYLQEAEIKHCRIAMLATLGWIVADFVHLP GAVHEVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQP GDFKFDPLNFAKDEKSLKKMQLSELKNGRLAMLAFSGIVTQAALTGHAFP YM* back to top mRNA from alignment at chr20:171483..173489-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00500.1 ID=NO20G00500.1|Name=NO20G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp|location=Sequence derived from alignment at chr20:171483..173489- (Nannochloropsis oceanica) AAACACAGACTTCTCTCCACCCACAACCACCACCCCGCAAAACATGAAGC
TCTTGTCCTTCGCTTGCCTCCTCGGCGCAGCCACTGCCTTCGTCCCCTCC
ATGCCTACGACGACCCGCACCCGCGGCGCCGTCCGCATGATGGCGGAGAA
ATCCAAGGCTGTCCCTTTCCTGCCCCGGCCCGCGGCGCTTGACGGCTCGG
TTGTTGGGGATGTTGGCTTTGACCCGGTGGGGTTCACCAGCTGGTTGCCC
CTTTCTTACTTGCAGGAGGCCGAGATCAAGCACTGCCGCATTGCCATGCT
TGCCACCCTGGGCTGGATCGTCGCGGACTTCGTACATTTACCTG GTACGT
TTTCTTTTGTATATCTAGAATGGTGTGTGTCGTGACACGGGGAGGCTAGC
TATCGTGATGAGACGATTTTTGACGTCGCCCTCCTATCCAACCAACACTT
ACCCCTCCCCTCCCTCCCTCTTTCCGATCCTCCCTTCCATTCCAATCACA
TGCAGGCGCTGTCCACGAGGTCTCCTCTCTGGCCGCCCACGACGTGGCCG
TCAAGTCCGGTGCCCTCGCCCAGATTTTGATTTGGACCTCTATCGCCGAG
GCTATCTCCGTCATTGCCATTTCCCAGATGCTCGAGGGATCTGGCCGCCA
G GTACGGTCCCCTTTTCTATCACATGTCGTCTCCTTTCCTTTGTCGTCCT
GTCGTCGGCATTTGTGTGATCACCTGTGAGTCCCTTTTTTTCCTTTTCTC
ACTCTAGTCTCGACGCCGTTTACCCACCACTCACTCCTCCTTCCCTCCCT
CCCTCCCCTTTTCCCCACACTGAACATCTCAGCCCGGTGACTTCAAGTTC
GATCCCCTCAACTTTGCCAAGGACGAAAAGAGCCTGAAGAAGATGCAGCT
CAGCGAGCTCAAGAACGGACGCCTGGCCATG GTACGGTCCCGTAAGGGAG
CTATTTCCCCCTTTTTTCTGTTTTGTGATTGCGCTGCCTGGCTGCTTGCT
TCACATGAGTATGAAGAAATCCATTAGTATTCAGATTTCTACAGTTTGTA
CGGTAGACTTACATCTTCTCCTCTCCCCCCACCCCTCTTCCCTCTTTATC
AGCTCGCCTTCTCCGGCATTGTCACCCAGGCCGCCCTCACGGGCCATGCC
TTCCCCTACATGTAA ACGTCGACTCCCGCCCTGTCAACCGATTTATCCTT
CTCGTCTCCTTCCTCTTTACAAGCCTTGTCCTCATTTGTCCTCCTTTAAG
CCCTCAGCGTGGTCACCGCAGCAGCTGGTCCCGTCGTCAAGGGCACCCGT
TCGTAATGTAGCTTTCCCTATCTTAATCACCCCCTTTTGTCGTTCCCCTC
CCGTGTGTAGGGTCTCTCCCGGACGGCTTTAATTAAAAGCCTGTGGGTCA
TCTACACACTGATGTACCCTTCCGCCCCCCTCATATTTGTTCGTGCAGTG
TGTTTGTCTGTGTCGTGGGAGTTCTGTTCAGTTCTGTTCAAGAGCGAGTG
TATGACATCATGTGGGTGTGGGCAGCTTTTCAGGAGAAAGATAGAAGGAA
CAGAATCAAAAGAGACGAAAAAGAAAAAAAGAACCACAACACATGCAGTG
GCGGAGTGGACTGGAAGAAGGCACATGAAACTAGAGGAAAGCCAATGAAG
AAGTACCCTGGTAGATCTCCTTTTCTCAACTTCCATCAAAGGGCATACAC
GTCTCACTCTATCTTTTGCTTTACTAATTTTCCTCATGCTGAGAAGGGGA
CTCCTTAAGGAAGGGAGGGGTGGGAGTCATGTCGAAGGGACGAGCTGTAA
CGGCTGGCCCAACGTCTGCTTAACGGAACTTAACGCCATTGCTCGCTTGG
CCTCTCTTGTTTTTGGAGGCATGTCTGCCACACAGAAGCACCCCTTTATG
GAGGACACCCTCAACAACACGTATTCCTAAATTGCTGGCTTGACCTCTTG
TCACCCCTCCTAATCGCAATCATCGCTCTTTCACTGACCGCCTTTCACAA
ATCAGGA back to top Coding sequence (CDS) from alignment at chr20:171483..173489-
>NO20G00500.1 ID=NO20G00500.1|Name=NO20G00500.1|organism=Nannochloropsis oceanica|type=CDS|length=609bp|location=Sequence derived from alignment at chr20:171483..173489- (Nannochloropsis oceanica) ATGAAGCTCTTGTCCTTCGCTTGCCTCCTCGGCGCAGCCACTGCCTTCGT CCCCTCCATGCCTACGACGACCCGCACCCGCGGCGCCGTCCGCATGATGG CGGAGAAATCCAAGGCTGTCCCTTTCCTGCCCCGGCCCGCGGCGCTTGAC GGCTCGGTTGTTGGGGATGTTGGCTTTGACCCGGTGGGGTTCACCAGCTG GTTGCCCCTTTCTTACTTGCAGGAGGCCGAGATCAAGCACTGCCGCATTG CCATGCTTGCCACCCTGGGCTGGATCGTCGCGGACTTCGTACATTTACCT GGCGCTGTCCACGAGGTCTCCTCTCTGGCCGCCCACGACGTGGCCGTCAA GTCCGGTGCCCTCGCCCAGATTTTGATTTGGACCTCTATCGCCGAGGCTA TCTCCGTCATTGCCATTTCCCAGATGCTCGAGGGATCTGGCCGCCAGCCC GGTGACTTCAAGTTCGATCCCCTCAACTTTGCCAAGGACGAAAAGAGCCT GAAGAAGATGCAGCTCAGCGAGCTCAAGAACGGACGCCTGGCCATGCTCG CCTTCTCCGGCATTGTCACCCAGGCCGCCCTCACGGGCCATGCCTTCCCC TACATGTAA back to top