NO20G00370, NO20G00370 (gene) Nannochloropsis oceanica

Overview
NameNO20G00370
Unique NameNO20G00370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2288
Alignment locationchr20:124768..127055 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:124768..127055 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO20G00370 vs. NCBI_GenBank
Match: EWM22152.1 (hypothetical protein Naga_100064g16 [Nannochloropsis gaditana])

HSP 1 Score: 436.8 bits (1122), Expect = 9.000e-119
Identity = 240/516 (46.51%), Postives = 293/516 (56.78%), Query Frame = 0
Query:   10 PIASYRYRC-CRPLPSRGELCGGTGTSR----NIQVTWLQPYHRTIFEYFWRPKPVSSLPLSSGNKEDGPS----------SSTPSPPHVHHDLYDKQTLWGAKTGVGSKMPFPPQATNSLLDKLEKAHLCTEHLLHFTSR--HRRYT------SSSSSGHTALSTFPFLEELVDEHWKFRLKRSPSSLPQAGLGLFLTRGTIKAGDVITCYPGLMYRIPYDLEICMPMDEVSFTPCPPSFLLKNDYLLRFHHADTNQHLLLDGCPRGISALNFISANQQRGRPWANMEWLESNSHACGRKGLLDSHLHPSEGMGEG-------GGGMAEEQCVGEGGEYVRVPTVYDTSKYFAAKLGLGNMTRTPFGLRQKREGITWRRNQSFFTDAPGHGVDEKMQSCHEPEHVRGEGDXXXXXXXXXXXXXXXXXXHRFNDSRAPGSYNAEFHLCELPRDLPPHLLRFVPNLHFSDSLGDRRYCVLVTAAQDLEVPVGGPPLELFVPYASPFGGVCKHGFPLL 496
            P+AS  +   C P   +  L G +  S+    N++V   +   RTIF+Y W PK   SL   +G  + G                                   TGVGS+MPFPP+A +SLL++LEKAH+CTE LL   S+  H + T      SS  +    L + P LE+L+DEHW FRL+R PS+LP AG+GLFL +G + AG+VITC+PGL+YRIPYDLE CMPMDEVSF+PCPP FL+KNDYLLRF+H  TNQHLLLDGCP+GISALNFI+ANQ+RGRPWANMEWLES+   C R+G          G GEG       GG M    C+GEGGE V +P   D+SKYF AKLGLG                                                                     H  ND  +P  YNAEFHLCELP DLPPHLLRF+PNLHF+  +G R +CVLVTA+++LEVP G PP+E++VPYAS F  VCKHGFPLL
Sbjct:    9 PLASVSWLSRCYPHTIQPALIGNSIDSKRWTWNLKVLQWKSSQRTIFQYLWPPKSGPSLSHPAGKTDSGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGVGSRMPFPPKAEDSLLERLEKAHMCTERLLQRKSQLLHTKSTVTFPSSSSREAPSKRLGSCPVLEDLLDEHWTFRLERRPSTLPGAGMGLFLVQGRVHAGEVITCHPGLVYRIPYDLEACMPMDEVSFSPCPPPFLVKNDYLLRFYHPVTNQHLLLDGCPQGISALNFIAANQRRGRPWANMEWLESSPFGCRRRGPEREEGLVEGGWGEGRKDRGRPGGPMQGTSCLGEGGEEVLLPREMDSSKYFTAKLGLG---------------------------------------------------------------------HLVNDPHSPEKYNAEFHLCELPSDLPPHLLRFIPNLHFAQGIGSRHFCVLVTASKNLEVPQGAPPVEIYVPYASSFTEVCKHGFPLL 455          
BLAST of NO20G00370 vs. NCBI_GenBank
Match: EWM22151.1 (hypothetical protein Naga_100064g16 [Nannochloropsis gaditana])

HSP 1 Score: 335.5 bits (859), Expect = 2.800e-88
Identity = 183/373 (49.06%), Postives = 228/373 (61.13%), Query Frame = 0
Query:   10 PIASYRYRC-CRPLPSRGELCGGTGTSR----NIQVTWLQPYHRTIFEYFWRPKPVSSLPLSSGNKEDGPS----------SSTPSPPHVHHDLYDKQTLWGAKTGVGSKMPFPPQATNSLLDKLEKAHLCTEHLLHFTSR--HRRYT------SSSSSGHTALSTFPFLEELVDEHWKFRLKRSPSSLPQAGLGLFLTRGTIKAGDVITCYPGLMYRIPYDLEICMPMDEVSFTPCPPSFLLKNDYLLRFHHADTNQHLLLDGCPRGISALNFISANQQRGRPWANMEWLESNSHACGRKGLLDSHLHPSEGMGEG-------GGGMAEEQCVGEGGEYVRVPTVYDTSKYFAAKLGLGNMTRTPFGLRQKR 353
            P+AS  +   C P   +  L G +  S+    N++V   +   RTIF+Y W PK   SL   +G  + G                                   TGVGS+MPFPP+A +SLL++LEKAH+CTE LL   S+  H + T      SS  +    L + P LE+L+DEHW FRL+R PS+LP AG+GLFL +G + AG+VITC+PGL+YRIPYDLE CMPMDEVSF+PCPP FL+KNDYLLRF+H  TNQHLLLDGCP+GISALNFI+ANQ+RGRPWANMEWLES+   C R+G          G GEG       GG M    C+GEGGE V +P   D+SKYF AKLGLG++   P G   +R
Sbjct:    9 PLASVSWLSRCYPHTIQPALIGNSIDSKRWTWNLKVLQWKSSQRTIFQYLWPPKSGPSLSHPAGKTDSGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGVGSRMPFPPKAEDSLLERLEKAHMCTERLLQRKSQLLHTKSTVTFPSSSSREAPSKRLGSCPVLEDLLDEHWTFRLERRPSTLPGAGMGLFLVQGRVHAGEVITCHPGLVYRIPYDLEACMPMDEVSFSPCPPPFLVKNDYLLRFYHPVTNQHLLLDGCPQGISALNFIAANQRRGRPWANMEWLESSPFGCRRRGPEREEGLVEGGWGEGRKDRGRPGGPMQGTSCLGEGGEEVLLPREMDSSKYFTAKLGLGHLAHAPRGRHSER 381          
BLAST of NO20G00370 vs. NCBI_GenBank
Match: PSC76244.1 (hypothetical protein C2E20_0376 [Micractinium conductrix])

HSP 1 Score: 84.0 bits (206), Expect = 1.500e-12
Identity = 83/330 (25.15%), Postives = 116/330 (35.15%), Query Frame = 0
Query:  163 HWKFRLKRSPSSLPQAGLGLFLTRGT-IKAGDVITCYPGLMY-------RIPYDLEICMPMDEVSFTPCPPSFLLKNDYLLRFHHADTNQHLLLDGCPRGISALNFISANQQRGRPWANMEWLESNSHACGRKGLLDSHLHPSEGMGEGGGGMAEEQCVGEGGEYVRVPTVYDTSKYFAAKLGLGNMTRTPFGLRQKREGITWRRNQSFFTDAPGHGVDEKMQSCHEPEHVRGEGDXXXXXXXXXXXXXXXXXXHRFNDSRAPGSYNAEFHLCELPRDLPPHLLRFVPNLHFSDSLGD--RRYCVLVTAAQDLEVPVGGPPLELFVPYAS 483
            H   RL  +PS++P+AG G+FL  G+  + GD++T YPGL +        I   +   +P  +  F P PP+F+  N Y+L+   A   +  L+DG P G+SA  F +A    G P  N  WL+   H                                                +   K  LG++                            HG                                             P S    + LC LP DLPP LLR++P L   D+      R+ V+VTAA +L VP GGPPLEL   Y +
Sbjct:   23 HPAARLAVAPSTIPEAGRGVFLQPGSAARRGDILTLYPGLAHDMQAVQAGIQDAMAASIPAADECFAPAPPAFMAYNQYMLQRRCA--GRAFLIDGRPNGLSAQRFAAAAAVDGLP-VNAAWLD-EMHG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLLRKTALGHLI--------------------------NHG--------------------------------------------TPAS--VTYELCPLPADLPPSLLRWLPTLEAGDASASPGLRWAVVVTAAAELHVPAGGPPLELLADYGA 275          
BLAST of NO20G00370 vs. NCBI_GenBank
Match: XP_005854601.1 (hypothetical protein NGA_0209800, partial [Nannochloropsis gaditana CCMP526] >EKU21753.1 hypothetical protein NGA_0209800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 78.6 bits (192), Expect = 6.200e-11
Identity = 56/151 (37.09%), Postives = 79/151 (52.32%), Query Frame = 0
Query:  172 PSSLPQAGLGLFL-TRGTIKAGDVITCYPGLMYRIPYDLEICMPMDEVSFTPCPPSFLLKNDYLLRFHHADTNQHLLLDGCPRGISALNF--ISANQ-QRGRPWANMEWLESNSHACGRKGLLDSHLHPSEGMGEGGGGMAEEQCVGEGGE 319
            PSS+P AG GL+L     +  GD++T YPGL+Y +P+DL   MP ++ +F   PP F++ N +LLR   + +++  L DG P G+SA  F  IS  Q +R     N  WLE                   EG  E GGG A+E+    GG+
Sbjct:  121 PSSIPNAGRGLWLKPYQNVAKGDILTLYPGLIYELPHDLAALMPSED-AFAFAPPDFMIGNAFLLRV--SVSSRDFLCDGRPFGLSAHMFRAISRRQHERLGLQVNDAWLEGE----------------GEGGKENGGGTAKERGAEGGGK 252          
BLAST of NO20G00370 vs. NCBI_GenBank
Match: EWM23845.1 (hypothetical protein Naga_100273g2 [Nannochloropsis gaditana])

HSP 1 Score: 78.6 bits (192), Expect = 6.200e-11
Identity = 62/176 (35.23%), Postives = 88/176 (50.00%), Query Frame = 0
Query:  147 HTALSTFPFLEELVDEHWKFRLKRSPSSLPQAGLGLFL-TRGTIKAGDVITCYPGLMYRIPYDLEICMPMDEVSFTPCPPSFLLKNDYLLRFHHADTNQHLLLDGCPRGISALNF--ISANQ-QRGRPWANMEWLESNSHACGRKGLLDSHLHPSEGMGEGGGGMAEEQCVGEGGE 319
            HT+L +F     L+       L   PSS+P AG GL+L    T+  GD++T YPGL+Y +P+DL   MP ++ +F   PP F++ N +LLR   + +++  L DG P G+SA  F  IS  Q +R     N  WLE                   EG  E G G A+E+    GG+
Sbjct:  122 HTSLPSFSSATPLLP---PTLLDVRPSSIPNAGRGLWLKPYQTVAKGDILTLYPGLIYELPHDLAALMPSED-AFAFAPPDFMIGNAFLLRV--SVSSRDFLCDGRPFGLSAHMFRAISRRQHERLGLQVNDAWLEGE----------------GEGGKENGKGTAKEKGAEGGGK 275          
BLAST of NO20G00370 vs. NCBI_GenBank
Match: XP_005851253.1 (hypothetical protein CHLNCDRAFT_49994 [Chlorella variabilis] >EFN59151.1 hypothetical protein CHLNCDRAFT_49994 [Chlorella variabilis])

HSP 1 Score: 70.1 bits (170), Expect = 2.200e-8
Identity = 47/130 (36.15%), Postives = 70/130 (53.85%), Query Frame = 0
Query:  156 LEELVDEHWKFRLKRSPSSL--PQAGLGLFLTRGTIKAGDVITCYPGLMYRI-PYDLEICMPMDEVSFTPCPPSFLLKNDYLLRFHHADTNQHLLLDGCPRGISALNF--ISANQQRGRPWA---NMEWL 278
            L E + +   F L+R PS +  P AG G+FLT G   AG ++T YPGL++ +  + L + +   + +  P PP++ L N YLL+      N   L+DG P G+SA  F   +A+   G+P A   N  WL
Sbjct:  596 LTEALADTIGFELQRRPSGIQHPDAGDGVFLTAGGCPAGGILTLYPGLVHDMGDFVLLLGVSAPDDACAPAPPAWTLDNHYLLQLR--CLNAACLVDGQPGGLSAQRFQAAAASWAAGQPEAALVNASWL 723          
The following BLAST results are available for this feature:
BLAST of NO20G00370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM22152.19.000e-11946.51hypothetical protein Naga_100064g16 [Nannochlorops... [more]
EWM22151.12.800e-8849.06hypothetical protein Naga_100064g16 [Nannochlorops... [more]
PSC76244.11.500e-1225.15hypothetical protein C2E20_0376 [Micractinium cond... [more]
XP_005854601.16.200e-1137.09hypothetical protein NGA_0209800, partial [Nannoch... [more]
EWM23845.16.200e-1135.23hypothetical protein Naga_100273g2 [Nannochloropsi... [more]
XP_005851253.12.200e-836.15hypothetical protein CHLNCDRAFT_49994 [Chlorella v... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002605NSK002605Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00370.1NO20G00370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594312gene_6248Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100064g16gene8287Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00370.1NO20G00370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00370 ID=NO20G00370|Name=NO20G00370|organism=Nannochloropsis oceanica|type=gene|length=2288bp
ACAGCTACAAGCGTTCATCATGACCATCGTCATCAGTATCCTTTTTCCTG
ATTAATGCGATTCCTCATTCGTCGCCTGCTCCCGATCGCGTCCTATCGAT
ATCGGTGTTGCCGCCCACTTCCTAGCCGCGGGGAGTTGTGCGGCGGCACC
GGTACCAGTCGCAATATCCAGGTCACGTGGCTACAGCCCTACCATCGAAC
TATCTTCGAATACTTCTGGCGTCCTAAGCCTGTGTCATCGTTGCCGTTGT
CGTCTGGAAACAAAGAAGATGGCCCGTCTTCCTCCACTCCCTCACCGCCA
CACGTGCACCACGACCTTTACGATAAGCAAACCCTCTGGGGTGCCAAGAC
TGGTGTTGGAAGCAAGATGCCCTTCCCGCCCCAAGCCACTAATTCCCTCC
TCGACAAGCTTGAAAAGGCACATCTGTGCACCGAGCATTTGCTGCACTTT
ACCAGCCGCCATCGCCGCTACACTTCCAGCAGCAGCAGCGGCCACACGGC
ATTGTCCACCTTCCCCTTTCTCGAAGAGCTGGTGGATGAGCATTGGAAAT
TCCGTCTCAAACGAAGTCCTTCCTCTCTTCCCCAAGCCGGGCTCGGTCTG
TTTCTGACACGAGGAACAATTAAAGCCGGAGACGTGATTACATGCTACCC
TGGCCTCATGTACCGTATCCCTTACGATCTCGAAATCTGCATGCCTATGG
ACGAGGTCTCCTTCACCCCTTGCCCTCCCTCCTTCCTTCTAAAAAACGAC
TACCTTCTCCGATTTCATCACGCTGACACCAATCAGCACTTGCTCCTCGA
TGGCTGCCCTCGGGGAATCTCCGCCCTGAATTTCATCAGCGCAAACCAAC
AACGAGGCCGCCCCTGGGCGAATATGGAGTGGTTGGAGAGTAATTCTCAC
GCGTGCGGACGAAAAGGACTGCTTGATTCGCATTTACACCCGTCGGAGGG
GATGGGAGAGGGAGGAGGGGGGATGGCGGAGGAGCAGTGTGTGGGGGAAG
GGGGGGAGTATGTGAGGGTCCCGACGGTTTATGACACGAGCAAATATTTT
GCGGCGAAGCTTGGCCTGGGCAATATGAgtaagtgaggaggttgaggatg
gagaggagggatggatgtctattgtctgcgtgcacccgtgcgtgagtatg
cgggtgggtgggtacgggtgggtgtggatatgggtgtcgtaatggtgctt
gcagaggtaagtaagtatgtatgctggcgacaagtgatgggaaagaggga
gggggggaggaagggggggggggggggggggattgaaaggacggagaagg
agtgaaatcccctttcctttcccgtggctgttctcccctccttccccggt
gacctttcataggggtctctccctcttcttttttgcctgttttcccttca
acaacgaatgtaacaacagCTCGTACCCCCTTTGGCCTGCGCCAAAAAAG
GGAAGGCATTACGTGGCGGCGCAATCAATCATTCTTTACCGACGCTCCTG
GCCATGGGGTGGACGAGAAGATGCAGAGCTGCCACGAACCAGAGCACGTG
AGAGGAGAGGGTGATGAAGAATACCACCACCAGCAGCATCAACAGAAGCA
ACAGCAGCAGCAGCAGCCGCATAGATgtgaggcatgcttgtgatggctgt
atgcttgtaaatgttacggagtagatgaagtggtagtagtaataatagta
ataatagtagtcgtagtagtagtagtagtagtagtagtagtagtagtagt
agtagtagagtagtagtagtagtagtagtagtagtagtagtagtagagta
gtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagt
agtagtagttgttgttgttgttgttgttgttgttgtagttcccggttctt
cctcatgcgaaagttgacggataaaatatgaagctaaaaacatcgtcctc
tcggaagcttatcacattcatctacttgccacccgccccctctctccctc
ctctcctccctctcccttaccaaaaccacagTCAACGATTCCCGCGCCCC
CGGGAGCTACAATGCTGAGTTCCACCTGTGTGAGCTCCCTCGCGACCTCC
CTCCACACCTCCTTCGCTTTGTGCCTAACCTGCATTTTTCGGATTCCCTG
GGCGATCGCCGGTATTGCGTGTTGGTGACAGCGGCGCAGGACTTGGAGGT
GCCCGTGGGAGGACCGCCGCTGGAGTTATTTGTGCCATACGCGAGCCCGT
TTGGCGGCGTGTGCAAGCATGGGTTTCCATTGCTCTAG
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protein sequence of NO20G00370.1

>NO20G00370.1-protein ID=NO20G00370.1-protein|Name=NO20G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MRFLIRRLLPIASYRYRCCRPLPSRGELCGGTGTSRNIQVTWLQPYHRTI
FEYFWRPKPVSSLPLSSGNKEDGPSSSTPSPPHVHHDLYDKQTLWGAKTG
VGSKMPFPPQATNSLLDKLEKAHLCTEHLLHFTSRHRRYTSSSSSGHTAL
STFPFLEELVDEHWKFRLKRSPSSLPQAGLGLFLTRGTIKAGDVITCYPG
LMYRIPYDLEICMPMDEVSFTPCPPSFLLKNDYLLRFHHADTNQHLLLDG
CPRGISALNFISANQQRGRPWANMEWLESNSHACGRKGLLDSHLHPSEGM
GEGGGGMAEEQCVGEGGEYVRVPTVYDTSKYFAAKLGLGNMTRTPFGLRQ
KREGITWRRNQSFFTDAPGHGVDEKMQSCHEPEHVRGEGDEEYHHQQHQQ
KQQQQQQPHRFNDSRAPGSYNAEFHLCELPRDLPPHLLRFVPNLHFSDSL
GDRRYCVLVTAAQDLEVPVGGPPLELFVPYASPFGGVCKHGFPLL*
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Synonyms
Publications