NO20G00370.1, NO20G00370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00370.1
Unique NameNO20G00370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1542
Alignment locationchr20:124768..127055 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:124768..127055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G00370.1 vs.
Match: EWM22151.1 (hypothetical protein Naga_100064g16 [Nannochloropsis gaditana])

HSP 1 Score: 368.6 bits (945), Expect = 3.000e-98
Identity = 197/373 (52.82%), Postives = 245/373 (65.68%), Query Frame = 0 
Query:   10 PIASYRYRC-CRPLPSRGELCGGTGTSR----NIQVTWLQPYHRTIFEYFWRPKPVSSLPLSSGNKEDGPSS----------STPSPPHVHHDLYDKQTLWGAKTGVGSKMPFPPQATNSLLDKLEKAHLCTEHLLHFTSR--HRRYTSS--SSSGHTA----LSTFPFLEELVDEHWKFRLKRSPSSLPQAGLGLFLTRGTIKAGDVITCYPGLMYRIPYDLEICMPMDEVSFTPCPPSFLLKNDYLLRFHHADTNQHLLLDGCPRGISALNFISANQQRGRPWANMEWLESNSHACGRKGLLDSHLHPSEGMGEG-------GGGMAEEQCVGEGGEYVRVPTVYDTSKYFAAKLGLGNMTRTPFGLRQKR 353
            P+AS  +   C P   +  L G +  S+    N++V   +   RTIF+Y W PK   SL   +G  + G  +          S     + H DLY+K TLWGAKTGVGS+MPFPP+A +SLL++LEKAH+CTE LL   S+  H + T +  SSS   A    L + P LE+L+DEHW FRL+R PS+LP AG+GLFL +G + AG+VITC+PGL+YRIPYDLE CMPMDEVSF+PCPP FL+KNDYLLRF+H  TNQHLLLDGCP+GISALNFI+ANQ+RGRPWANMEWLES+   C R+G          G GEG       GG M    C+GEGGE V +P   D+SKYF AKLGLG++   P G   +R
Sbjct:    9 PLASVSWLSRCYPHTIQPALIGNSIDSKRWTWNLKVLQWKSSQRTIFQYLWPPKSGPSLSHPAGKTDSGSQNDVGGDNGQDISKSQNLYSHKDLYNKDTLWGAKTGVGSRMPFPPKAEDSLLERLEKAHMCTERLLQRKSQLLHTKSTVTFPSSSSREAPSKRLGSCPVLEDLLDEHWTFRLERRPSTLPGAGMGLFLVQGRVHAGEVITCHPGLVYRIPYDLEACMPMDEVSFSPCPPPFLVKNDYLLRFYHPVTNQHLLLDGCPQGISALNFIAANQRRGRPWANMEWLESSPFGCRRRGPEREEGLVEGGWGEGRKDRGRPGGPMQGTSCLGEGGEEVLLPREMDSSKYFTAKLGLGHLAHAPRGRHSER 381
The following BLAST results are available for this feature:
BLAST of NO20G00370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22151.13.000e-9852.82hypothetical protein Naga_100064g16 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00370NO20G00370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00370.1NO20G00370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00370.1.cds1NO20G00370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00370.1.cds2NO20G00370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00370.1.cds3NO20G00370.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00370.1 ID=NO20G00370.1|Name=NO20G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp
ACAGCTACAAGCGTTCATCATGACCATCGTCATCAGTATCCTTTTTCCTG
ATTAATGCGATTCCTCATTCGTCGCCTGCTCCCGATCGCGTCCTATCGAT
ATCGGTGTTGCCGCCCACTTCCTAGCCGCGGGGAGTTGTGCGGCGGCACC
GGTACCAGTCGCAATATCCAGGTCACGTGGCTACAGCCCTACCATCGAAC
TATCTTCGAATACTTCTGGCGTCCTAAGCCTGTGTCATCGTTGCCGTTGT
CGTCTGGAAACAAAGAAGATGGCCCGTCTTCCTCCACTCCCTCACCGCCA
CACGTGCACCACGACCTTTACGATAAGCAAACCCTCTGGGGTGCCAAGAC
TGGTGTTGGAAGCAAGATGCCCTTCCCGCCCCAAGCCACTAATTCCCTCC
TCGACAAGCTTGAAAAGGCACATCTGTGCACCGAGCATTTGCTGCACTTT
ACCAGCCGCCATCGCCGCTACACTTCCAGCAGCAGCAGCGGCCACACGGC
ATTGTCCACCTTCCCCTTTCTCGAAGAGCTGGTGGATGAGCATTGGAAAT
TCCGTCTCAAACGAAGTCCTTCCTCTCTTCCCCAAGCCGGGCTCGGTCTG
TTTCTGACACGAGGAACAATTAAAGCCGGAGACGTGATTACATGCTACCC
TGGCCTCATGTACCGTATCCCTTACGATCTCGAAATCTGCATGCCTATGG
ACGAGGTCTCCTTCACCCCTTGCCCTCCCTCCTTCCTTCTAAAAAACGAC
TACCTTCTCCGATTTCATCACGCTGACACCAATCAGCACTTGCTCCTCGA
TGGCTGCCCTCGGGGAATCTCCGCCCTGAATTTCATCAGCGCAAACCAAC
AACGAGGCCGCCCCTGGGCGAATATGGAGTGGTTGGAGAGTAATTCTCAC
GCGTGCGGACGAAAAGGACTGCTTGATTCGCATTTACACCCGTCGGAGGG
GATGGGAGAGGGAGGAGGGGGGATGGCGGAGGAGCAGTGTGTGGGGGAAG
GGGGGGAGTATGTGAGGGTCCCGACGGTTTATGACACGAGCAAATATTTT
GCGGCGAAGCTTGGCCTGGGCAATATGACTCGTACCCCCTTTGGCCTGCG
CCAAAAAAGGGAAGGCATTACGTGGCGGCGCAATCAATCATTCTTTACCG
ACGCTCCTGGCCATGGGGTGGACGAGAAGATGCAGAGCTGCCACGAACCA
GAGCACGTGAGAGGAGAGGGTGATGAAGAATACCACCACCAGCAGCATCA
ACAGAAGCAACAGCAGCAGCAGCAGCCGCATAGATTCAACGATTCCCGCG
CCCCCGGGAGCTACAATGCTGAGTTCCACCTGTGTGAGCTCCCTCGCGAC
CTCCCTCCACACCTCCTTCGCTTTGTGCCTAACCTGCATTTTTCGGATTC
CCTGGGCGATCGCCGGTATTGCGTGTTGGTGACAGCGGCGCAGGACTTGG
AGGTGCCCGTGGGAGGACCGCCGCTGGAGTTATTTGTGCCATACGCGAGC
CCGTTTGGCGGCGTGTGCAAGCATGGGTTTCCATTGCTCTAG
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protein sequence of NO20G00370.1

>NO20G00370.1-protein ID=NO20G00370.1-protein|Name=NO20G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MRFLIRRLLPIASYRYRCCRPLPSRGELCGGTGTSRNIQVTWLQPYHRTI
FEYFWRPKPVSSLPLSSGNKEDGPSSSTPSPPHVHHDLYDKQTLWGAKTG
VGSKMPFPPQATNSLLDKLEKAHLCTEHLLHFTSRHRRYTSSSSSGHTAL
STFPFLEELVDEHWKFRLKRSPSSLPQAGLGLFLTRGTIKAGDVITCYPG
LMYRIPYDLEICMPMDEVSFTPCPPSFLLKNDYLLRFHHADTNQHLLLDG
CPRGISALNFISANQQRGRPWANMEWLESNSHACGRKGLLDSHLHPSEGM
GEGGGGMAEEQCVGEGGEYVRVPTVYDTSKYFAAKLGLGNMTRTPFGLRQ
KREGITWRRNQSFFTDAPGHGVDEKMQSCHEPEHVRGEGDEEYHHQQHQQ
KQQQQQQPHRFNDSRAPGSYNAEFHLCELPRDLPPHLLRFVPNLHFSDSL
GDRRYCVLVTAAQDLEVPVGGPPLELFVPYASPFGGVCKHGFPLL*
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mRNA from alignment at chr20:124768..127055-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00370.1 ID=NO20G00370.1|Name=NO20G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2288bp|location=Sequence derived from alignment at chr20:124768..127055- (Nannochloropsis oceanica)
ACAGCTACAAGCGTTCATCATGACCATCGTCATCAGTATCCTTTTTCCTG
ATTAATGCGATTCCTCATTCGTCGCCTGCTCCCGATCGCGTCCTATCGAT
ATCGGTGTTGCCGCCCACTTCCTAGCCGCGGGGAGTTGTGCGGCGGCACC
GGTACCAGTCGCAATATCCAGGTCACGTGGCTACAGCCCTACCATCGAAC
TATCTTCGAATACTTCTGGCGTCCTAAGCCTGTGTCATCGTTGCCGTTGT
CGTCTGGAAACAAAGAAGATGGCCCGTCTTCCTCCACTCCCTCACCGCCA
CACGTGCACCACGACCTTTACGATAAGCAAACCCTCTGGGGTGCCAAGAC
TGGTGTTGGAAGCAAGATGCCCTTCCCGCCCCAAGCCACTAATTCCCTCC
TCGACAAGCTTGAAAAGGCACATCTGTGCACCGAGCATTTGCTGCACTTT
ACCAGCCGCCATCGCCGCTACACTTCCAGCAGCAGCAGCGGCCACACGGC
ATTGTCCACCTTCCCCTTTCTCGAAGAGCTGGTGGATGAGCATTGGAAAT
TCCGTCTCAAACGAAGTCCTTCCTCTCTTCCCCAAGCCGGGCTCGGTCTG
TTTCTGACACGAGGAACAATTAAAGCCGGAGACGTGATTACATGCTACCC
TGGCCTCATGTACCGTATCCCTTACGATCTCGAAATCTGCATGCCTATGG
ACGAGGTCTCCTTCACCCCTTGCCCTCCCTCCTTCCTTCTAAAAAACGAC
TACCTTCTCCGATTTCATCACGCTGACACCAATCAGCACTTGCTCCTCGA
TGGCTGCCCTCGGGGAATCTCCGCCCTGAATTTCATCAGCGCAAACCAAC
AACGAGGCCGCCCCTGGGCGAATATGGAGTGGTTGGAGAGTAATTCTCAC
GCGTGCGGACGAAAAGGACTGCTTGATTCGCATTTACACCCGTCGGAGGG
GATGGGAGAGGGAGGAGGGGGGATGGCGGAGGAGCAGTGTGTGGGGGAAG
GGGGGGAGTATGTGAGGGTCCCGACGGTTTATGACACGAGCAAATATTTT
GCGGCGAAGCTTGGCCTGGGCAATATGAGTAAGTGAGGAGGTTGAGGATG
GAGAGGAGGGATGGATGTCTATTGTCTGCGTGCACCCGTGCGTGAGTATG
CGGGTGGGTGGGTACGGGTGGGTGTGGATATGGGTGTCGTAATGGTGCTT
GCAGAGGTAAGTAAGTATGTATGCTGGCGACAAGTGATGGGAAAGAGGGA
GGGGGGGAGGAAGGGGGGGGGGGGGGGGGGGATTGAAAGGACGGAGAAGG
AGTGAAATCCCCTTTCCTTTCCCGTGGCTGTTCTCCCCTCCTTCCCCGGT
GACCTTTCATAGGGGTCTCTCCCTCTTCTTTTTTGCCTGTTTTCCCTTCA
ACAACGAATGTAACAACAGCTCGTACCCCCTTTGGCCTGCGCCAAAAAAG
GGAAGGCATTACGTGGCGGCGCAATCAATCATTCTTTACCGACGCTCCTG
GCCATGGGGTGGACGAGAAGATGCAGAGCTGCCACGAACCAGAGCACGTG
AGAGGAGAGGGTGATGAAGAATACCACCACCAGCAGCATCAACAGAAGCA
ACAGCAGCAGCAGCAGCCGCATAGATGTGAGGCATGCTTGTGATGGCTGT
ATGCTTGTAAATGTTACGGAGTAGATGAAGTGGTAGTAGTAATAATAGTA
ATAATAGTAGTCGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTTGTTGTTGTTGTTGTTGTTGTTGTTGTAGTTCCCGGTTCTT
CCTCATGCGAAAGTTGACGGATAAAATATGAAGCTAAAAACATCGTCCTC
TCGGAAGCTTATCACATTCATCTACTTGCCACCCGCCCCCTCTCTCCCTC
CTCTCCTCCCTCTCCCTTACCAAAACCACAGTCAACGATTCCCGCGCCCC
CGGGAGCTACAATGCTGAGTTCCACCTGTGTGAGCTCCCTCGCGACCTCC
CTCCACACCTCCTTCGCTTTGTGCCTAACCTGCATTTTTCGGATTCCCTG
GGCGATCGCCGGTATTGCGTGTTGGTGACAGCGGCGCAGGACTTGGAGGT
GCCCGTGGGAGGACCGCCGCTGGAGTTATTTGTGCCATACGCGAGCCCGT
TTGGCGGCGTGTGCAAGCATGGGTTTCCATTGCTCTAG
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Coding sequence (CDS) from alignment at chr20:124768..127055-

>NO20G00370.1 ID=NO20G00370.1|Name=NO20G00370.1|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at chr20:124768..127055- (Nannochloropsis oceanica)
ATGCGATTCCTCATTCGTCGCCTGCTCCCGATCGCGTCCTATCGATATCG
GTGTTGCCGCCCACTTCCTAGCCGCGGGGAGTTGTGCGGCGGCACCGGTA
CCAGTCGCAATATCCAGGTCACGTGGCTACAGCCCTACCATCGAACTATC
TTCGAATACTTCTGGCGTCCTAAGCCTGTGTCATCGTTGCCGTTGTCGTC
TGGAAACAAAGAAGATGGCCCGTCTTCCTCCACTCCCTCACCGCCACACG
TGCACCACGACCTTTACGATAAGCAAACCCTCTGGGGTGCCAAGACTGGT
GTTGGAAGCAAGATGCCCTTCCCGCCCCAAGCCACTAATTCCCTCCTCGA
CAAGCTTGAAAAGGCACATCTGTGCACCGAGCATTTGCTGCACTTTACCA
GCCGCCATCGCCGCTACACTTCCAGCAGCAGCAGCGGCCACACGGCATTG
TCCACCTTCCCCTTTCTCGAAGAGCTGGTGGATGAGCATTGGAAATTCCG
TCTCAAACGAAGTCCTTCCTCTCTTCCCCAAGCCGGGCTCGGTCTGTTTC
TGACACGAGGAACAATTAAAGCCGGAGACGTGATTACATGCTACCCTGGC
CTCATGTACCGTATCCCTTACGATCTCGAAATCTGCATGCCTATGGACGA
GGTCTCCTTCACCCCTTGCCCTCCCTCCTTCCTTCTAAAAAACGACTACC
TTCTCCGATTTCATCACGCTGACACCAATCAGCACTTGCTCCTCGATGGC
TGCCCTCGGGGAATCTCCGCCCTGAATTTCATCAGCGCAAACCAACAACG
AGGCCGCCCCTGGGCGAATATGGAGTGGTTGGAGAGTAATTCTCACGCGT
GCGGACGAAAAGGACTGCTTGATTCGCATTTACACCCGTCGGAGGGGATG
GGAGAGGGAGGAGGGGGGATGGCGGAGGAGCAGTGTGTGGGGGAAGGGGG
GGAGTATGTGAGGGTCCCGACGGTTTATGACACGAGCAAATATTTTGCGG
CGAAGCTTGGCCTGGGCAATATGACTCGTACCCCCTTTGGCCTGCGCCAA
AAAAGGGAAGGCATTACGTGGCGGCGCAATCAATCATTCTTTACCGACGC
TCCTGGCCATGGGGTGGACGAGAAGATGCAGAGCTGCCACGAACCAGAGC
ACGTGAGAGGAGAGGGTGATGAAGAATACCACCACCAGCAGCATCAACAG
AAGCAACAGCAGCAGCAGCAGCCGCATAGATTCAACGATTCCCGCGCCCC
CGGGAGCTACAATGCTGAGTTCCACCTGTGTGAGCTCCCTCGCGACCTCC
CTCCACACCTCCTTCGCTTTGTGCCTAACCTGCATTTTTCGGATTCCCTG
GGCGATCGCCGGTATTGCGTGTTGGTGACAGCGGCGCAGGACTTGGAGGT
GCCCGTGGGAGGACCGCCGCTGGAGTTATTTGTGCCATACGCGAGCCCGT
TTGGCGGCGTGTGCAAGCATGGGTTTCCATTGCTCTAG
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Synonyms
Publications