NO20G00310, NO20G00310 (gene) Nannochloropsis oceanica

Overview
NameNO20G00310
Unique NameNO20G00310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3518
Alignment locationchr20:105596..109113 +

Link to JBrowse

Properties
Property NameValue
DescriptionGlycerol-3-phosphate dehydrogenase [NAD( )]
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:105596..109113 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO:0046168glycerol-3-phosphate catabolic process
GO:0006072glycerol-3-phosphate metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287NAD binding
GO:0004367glycerol-3-phosphate dehydrogenase [NAD+] activity
Vocabulary: Cellular Component
TermDefinition
GO:0009331glycerol-3-phosphate dehydrogenase complex
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
IPR0089276-PGluconate_DH_C-like
IPR006109G3P_DH_NAD-dep_C
IPR011128G3P_DH_NAD-dep_N
IPR006168G3P_DH_NAD-dep
Homology
BLAST of NO20G00310 vs. NCBI_GenBank
Match: EWM24210.1 (glycerol-3-phosphate dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 413.3 bits (1061), Expect = 7.000e-112
Identity = 221/325 (68.00%), Postives = 249/325 (76.62%), Query Frame = 0
Query:    2 RKKIQTSILVTPFFGWCYAQVAAHINAHHSHPQYLKDFRLADTITSSADPKTAFEGVNFILHCIPVQYSRQYLLQIAPFVPPDVPIISTSKGIEKGTLAMMNDILLETLGA-RELAFLSGPSFAKEIMQELVTCVVVASDSEVLANEAHDLMSSHYFRVFTSGDVVGVEVGGAVKNVIAIAAGMCEGLGLGMNAAAALVTRGLNEVQRLALFLGARSTTLTGLSGVGDTFGTCFGPLSRNRTLGVRLGKGEALKDILESMVEVAEGYATTFSLVQLIEKLPRAHKRERTFPIIYAVKSILDGTHTPQEGVRRLMNSKGRVELWNL 326
            +K I  +ILV         +VA HIN HH HP YL D  LA +I ++  P+ A    +FI+H +PVQYSR++L  IAP VP + PIISTSKGIE GTL MM DILLETLG  RE A+LSGPSFA+EI   LVT VV AS+SE LANE  D+M  +YFRVFTS DVVGVEVGGAVKNVIAIAAGMCEGLGLG NA AALVTRG NE+QRLAL LGAR +TLTGLSGVGDTFGTCFGPLSRNR LGVRLGKGE L++IL S  EVAEG+AT FSLVQLIEK  RA++RE  FPIIY VK IL+G  TP EG+R LM    RVE+WNL
Sbjct:  111 KKSIPVTILVRK------EEVAEHINLHHRHPTYLSDIALAPSIRATVQPEEALRDASFIIHAVPVQYSRKFLEDIAPHVPKNTPIISTSKGIETGTLCMMQDILLETLGPNRETAYLSGPSFAREIALGLVTAVVAASESEALANEICDIMGCNYFRVFTSTDVVGVEVGGAVKNVIAIAAGMCEGLGLGTNAMAALVTRGCNEMQRLALSLGARPSTLTGLSGVGDTFGTCFGPLSRNRNLGVRLGKGERLENILGSSTEVAEGHATAFSLVQLIEKTNRAYRRELEFPIIYGVKEILEGKRTPAEGLRDLMAMPVRVEMWNL 429          
BLAST of NO20G00310 vs. NCBI_GenBank
Match: XP_005829771.1 (hypothetical protein GUITHDRAFT_73617 [Guillardia theta CCMP2712] >EKX42791.1 hypothetical protein GUITHDRAFT_73617 [Guillardia theta CCMP2712])

HSP 1 Score: 338.2 bits (866), Expect = 2.800e-89
Identity = 174/291 (59.79%), Postives = 216/291 (74.23%), Query Frame = 0
Query:   26 INAHHSHPQYLKDFRLADTITSSADPKTAFEGVNFILHCIPVQYSRQYLLQIAPFVPPDVPIISTSKGIEKGTLAMMNDILLETLG-ARELAFLSGPSFAKEIMQELVTCVVVASDSEVLANEAHDLMSSHYFRVFTSGDVVGVEVGGAVKNVIAIAAGMCEGLGLGMNAAAALVTRGLNEVQRLALFLGARSTTLTGLSGVGDTFGTCFGPLSRNRTLGVRLGKGEALKDILESMVEVAEGYATTFSLVQ-LIEKLPRAHKRERTFPIIYAVKSILDGTHTPQEGVRRLM 315
            IN HH    YLKD  L D++T++ D + A +    I+H +PVQYSR++L ++AP+VP D P+I TSKGIE GTL +M DIL E LG +R+ AFLSGPSFA+EI   L T VVVAS S+ L N A ++     FRVFTS DV+GVE+GGAVKNVIAIAAGMCEGLGLG NA A LVTRG  E+Q LA  +GA  +TL GLSGVGDTFGTCFGPLSRNR LG+RLG+GE L+DIL S  EVAEGYAT  SLV+ L+ K+PR+ + +  FPI++ V  +L G  +P+EG++ LM
Sbjct:   52 INIHHRSSTYLKDVTLPDSVTATCDKEEALKDATLIIHAVPVQYSRKFLKEMAPYVPKDCPVICTSKGIETGTLCLMQDILREELGDSRDYAFLSGPSFAREIAVGLATAVVVASQSDTLTNRAAEIFGCENFRVFTSKDVIGVEIGGAVKNVIAIAAGMCEGLGLGTNAVAGLVTRGCLEMQTLARAVGASPSTLMGLSGVGDTFGTCFGPLSRNRNLGIRLGQGEKLEDILSSSTEVAEGYATALSLVEFLLTKMPRSFRMDLKFPILFGVAEVLKGERSPREGMKDLM 342          
BLAST of NO20G00310 vs. NCBI_GenBank
Match: CBJ31247.1 (Glycerol-3-phosphate dehydrogenase [Ectocarpus siliculosus])

HSP 1 Score: 334.0 bits (855), Expect = 5.400e-88
Identity = 172/324 (53.09%), Postives = 222/324 (68.52%), Query Frame = 0
Query:    2 RKKIQTSILVTPFFGWCYAQVAAHINAHHSHPQYLKDFRLADTITSSADPKTAFEGVNFILHCIPVQYSRQYLLQIAPFVPPDVPIISTSKGIEKGTLAMMNDILLETLGA-RELAFLSGPSFAKEIMQELVTCVVVASDSEVLANEAHDLMSSHYFRVFTSGDVVGVEVGGAVKNVIAIAAGMCEGLGLGMNAAAALVTRGLNEVQRLALFLGARSTTLTGLSGVGDTFGTCFGPLSRNRTLGVRLGKGEALKDILESMVEVAEGYATTFSLVQLIEKLPRAHKRERTFPIIYAVKSILDGTHTPQEGVRRLMNSKGRVELWN 325
            R +I T++LV          VA H+N H+ HP YLK  +L   I ++ADPK A     F++H +PVQY+R++L  + P +P   PI+S SKGIE  +L +MNDIL +  G  R  AFLSGPSFA+EI     T VV+ASD   LAN+   ++SS  FR FTS DVVGVEVGGAVKNVIA+AAGMCEGLGLG NA A LVTRG  E++RLA+ LG +S TL+GLSGVGDTFGTCFGPLSRNR  G+RLGKGE++++IL S  EVAEG  T  +L  LI K  ++++ +  + II+ V  IL GT  P+EG+  LM    + E+++
Sbjct:  303 RNQIPTTLLVRS------DSVAEHVNKHNEHPNYLKGIKLPQHIVATADPKEALRDATFVIHAVPVQYTRKFLENVVPHMPAGTPILSVSKGIETSSLMLMNDILKDLCGTERSYAFLSGPSFAREIAMNQATAVVIASDDSCLANDMAKVLSSPTFRCFTSKDVVGVEVGGAVKNVIALAAGMCEGLGLGTNAMAGLVTRGCGEMRRLAIILGGKSRTLSGLSGVGDTFGTCFGPLSRNRNFGIRLGKGESMEEILASSTEVAEGVDTALALADLIRKTDKSYRIDLKYAIIFGVAEILKGTRFPKEGLEDLMTMPLKAEMYD 620          
BLAST of NO20G00310 vs. NCBI_GenBank
Match: XP_002286719.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED96360.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 327.8 bits (839), Expect = 3.900e-86
Identity = 166/321 (51.71%), Postives = 227/321 (70.72%), Query Frame = 0
Query:    2 RKKIQTSILVTPFFGWCYAQVAAHINAHHSHPQYLKDFRLADTITSSADPKTAFEGVNFILHCIPVQYSRQYLLQIAPFVPPDVPIISTSKGIEKGTLAMMNDILLETLGA-RELAFLSGPSFAKEIMQELVTCVVVASDSEVLANEAHDLMSSHYFRVFTSGDVVGVEVGGAVKNVIAIAAGMCEGLGLGMNAAAALVTRGLNEVQRLALFLGARSTTLTGLSGVGDTFGTCFGPLSRNRTLGVRLGKGEALKDILESMVEVAEGYATTFSLVQLIEKLPRAHKRERTFPIIYAVKSILDGTHTPQEGVRRLMNSKGRVE 322
            +K + T++LV          VA+HIN +H HP+Y+ D  L   + ++ D K+A     +I+H +PVQY+R++L  +   +PP+VP++S SKGIE  +L  M DIL E LG  R  AFLSGPSFA+EI + + T VV+AS+  +LA++  DLMS   F VFTS DV+GVEVGGAVKNVIAIAAGMCEGLGLG NA + LVTRG  E++RL ++LGAR +T++GLSGVGDTFGTCFGPLSRNR  G RLGKGE   +I ESM EVAEG  T+ +LV++I++  + ++ +  +PI++ +  I++G   P EG++ LMN   R+E
Sbjct:   35 KKGVPTTLLVRS------EDVASHINENHRHPRYMSDICLPRMVRATCDKKSALSDATYIIHAVPVQYTREFLNSVKDDIPPNVPVLSASKGIETSSLGFMADILKECLGEDRSYAFLSGPSFAREICEGVATAVVIASEDLMLADDLADLMSGEDFAVFTSRDVIGVEVGGAVKNVIAIAAGMCEGLGLGTNAMSGLVTRGCGEMRRLGIYLGARPSTISGLSGVGDTFGTCFGPLSRNRRFGYRLGKGETAAEIRESMTEVAEGVDTSIALVKMIKERCKGYRLDLKYPILFGMADIIEGNMKPMEGMKALMNFPTRME 349          
BLAST of NO20G00310 vs. NCBI_GenBank
Match: XP_002177310.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51773.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 318.2 bits (814), Expect = 3.100e-83
Identity = 167/321 (52.02%), Postives = 222/321 (69.16%), Query Frame = 0
Query:    2 RKKIQTSILVTPFFGWCYAQVAAHINAHHSHPQYLKDFRLADTITSSADPKTAFEGVNFILHCIPVQYSRQYLLQIAPFVPPDVPIISTSKGIEKGTLAMMNDILLETLGA-RELAFLSGPSFAKEIMQELVTCVVVASDSEVLANEAHDLMSSHYFRVFTSGDVVGVEVGGAVKNVIAIAAGMCEGLGLGMNAAAALVTRGLNEVQRLALFLGARSTTLTGLSGVGDTFGTCFGPLSRNRTLGVRLGKGEALKDILESMVEVAEGYATTFSLVQLIEKLPRAHKRERTFPIIYAVKSILDGTHTPQEGVRRLMNSKGRVE 322
            RK I T++LV          +A  IN +H+HP+Y+KD  L   I +++DP+ A     +I+H +PVQYSR +L  +  F+ P+ P++S SKGIE  +L  M DIL E+LG  R  AFLSGPSFA+EI + + T VVVAS+  +LA +  DL+S   FR FTS DV+GVE+GGAVKNVIA+AAGMCEGLGLG NA + LVTRG  E++RL L  GAR +T+ GLSGVGDTFGTCFGPLSRNR  G RLGKGE +++I  S  EVAEG  T  +LV LI+   + ++ +  FPI++ V +IL+G  TP+EG+  +MN   ++E
Sbjct:   31 RKGIPTTLLVRS------DDIAQSINTNHTHPRYMKDIVLPARIRATSDPEKALSDATYIVHAVPVQYSRAFLDSVKEFIAPNTPVLSGSKGIETSSLGFMADILKESLGRDRPYAFLSGPSFAREICEGVATAVVVASEDLMLARDLADLLSDDNFRCFTSRDVMGVEIGGAVKNVIALAAGMCEGLGLGTNAMSGLVTRGCGEMRRLGLTFGARPSTIAGLSGVGDTFGTCFGPLSRNRKFGYRLGKGETMEEIKASSTEVAEGVDTAIALVNLIKTECKGYRLDLKFPILFGVAAILEGNLTPREGLIGIMNMPFQME 345          
BLAST of NO20G00310 vs. NCBI_GenBank
Match: EJK77600.1 (hypothetical protein THAOC_00555 [Thalassiosira oceanica])

HSP 1 Score: 316.6 bits (810), Expect = 8.900e-83
Identity = 157/301 (52.16%), Postives = 217/301 (72.09%), Query Frame = 0
Query:   22 VAAHINAHHSHPQYLKDFRLADTITSSADPKTAFEGVNFILHCIPVQYSRQYLLQIAPFVPPDVPIISTSKGIEKGTLAMMNDILLETLGA-RELAFLSGPSFAKEIMQELVTCVVVASDSEVLANEAHDLMSSHYFRVFTSGDVVGVEVGGAVKNVIAIAAGMCEGLGLGMNAAAALVTRGLNEVQRLALFLGARSTTLTGLSGVGDTFGTCFGPLSRNRTLGVRLGKGEALKDILESMVEVAEGYATTFSLVQLIEKLPRAHKRERTFPIIYAVKSILDGTHTPQEGVRRLMNSKGRVE 322
            VA  IN  H HP Y+ D  L  T+ ++ +  +A     +I+H +PVQY+RQ+L  +A ++PP+VP++S SKGIE  +L  M DIL + LG  R  AFLSGPSFA+EI + + T VV+AS+  +LA++  +LM+   F VFTS DV+G+EVGGAVKNVIAIAAGMCEGLGLG NA + LVTRG  E++RL ++LGAR +T++GLSGVGDTFGTCFGPLSRNR  G RLG+GE  ++I  SM EVAEG  T+ +LV++I++  + ++ +  +PI++ V  I++G   P EG++ LMN   R+E
Sbjct:  183 VARSINEKHRHPTYMSDIALPRTVRATTNKASALGDATYIIHAVPVQYTRQFLRSVAEYIPPNVPVLSASKGIETSSLGFMADILRDCLGEDRSYAFLSGPSFAREICEGVATAVVIASEDIMLADDLAELMAGEDFAVFTSRDVIGIEVGGAVKNVIAIAAGMCEGLGLGTNALSGLVTRGCGEMRRLGIYLGARPSTISGLSGVGDTFGTCFGPLSRNRQFGYRLGRGETAEEIRASMTEVAEGVDTSIALVKMIKERCKGYRLDLKYPILFGVAEIIEGNMKPLEGLKGLMNFPTRME 483          
BLAST of NO20G00310 vs. NCBI_GenBank
Match: GAX09887.1 (hypothetical protein FisN_11Lh132 [Fistulifera solaris])

HSP 1 Score: 315.8 bits (808), Expect = 1.500e-82
Identity = 161/315 (51.11%), Postives = 220/315 (69.84%), Query Frame = 0
Query:    2 RKKIQTSILVTPFFGWCYAQVAAHINAHHSHPQYLKDFRLADTITSSADPKTAFEGVNFILHCIPVQYSRQYLLQIAPFVPPDVPIISTSKGIEKGTLAMMNDILLETLG-ARELAFLSGPSFAKEIMQELVTCVVVASDSEVLANEAHDLMSSHYFRVFTSGDVVGVEVGGAVKNVIAIAAGMCEGLGLGMNAAAALVTRGLNEVQRLALFLGARSTTLTGLSGVGDTFGTCFGPLSRNRTLGVRLGKGEALKDILESMVEVAEGYATTFSLVQLIEKLPRAHKRERTFPIIYAVKSILDGTHTPQEGVRRLMN 316
            RK   T+ILV         ++A  IN +H+HP+Y++D +   T+ ++ +P+       +I+H +PVQYSR++L  +  ++PP  P++S SKGIE  +L  M DIL ETLG  R  AFLSGPSFA+EI + + T VV+AS+  +LA +   L+S   FRVFTS DV+GVE+GGAVKNVIA+AAGMCEGLGLG NA + LVTRG  E++RL L LGAR +T+ GLSGVGDTFGTCFGPLSRNR  G RLGKGE +++IL S  EVAEG  T+ +LV  I++  + ++ +  +PI++ V  IL G  TP +G++ +MN
Sbjct:   77 RKGFPTTILVRE------QEIADSINTNHTHPRYMRDVKFPPTLRATTNPQDCLPDATYIVHAVPVQYSRKFLNSVKDYIPPGTPVLSGSKGIETSSLGFMADILKETLGEERPYAFLSGPSFAREICEGVATAVVIASEDLLLARDLATLLSDGNFRVFTSRDVIGVEIGGAVKNVIALAAGMCEGLGLGTNAMSGLVTRGCGEMRRLGLTLGARPSTIAGLSGVGDTFGTCFGPLSRNRQFGYRLGKGETMEEILASSSEVAEGVDTSIALVNFIKQNCKGYRLDLKYPILFGVADILQGKLTPLDGLKGIMN 385          
BLAST of NO20G00310 vs. NCBI_GenBank
Match: GAX14409.1 (hypothetical protein FisN_11Hh132 [Fistulifera solaris])

HSP 1 Score: 315.1 bits (806), Expect = 2.600e-82
Identity = 161/315 (51.11%), Postives = 219/315 (69.52%), Query Frame = 0
Query:    2 RKKIQTSILVTPFFGWCYAQVAAHINAHHSHPQYLKDFRLADTITSSADPKTAFEGVNFILHCIPVQYSRQYLLQIAPFVPPDVPIISTSKGIEKGTLAMMNDILLETLG-ARELAFLSGPSFAKEIMQELVTCVVVASDSEVLANEAHDLMSSHYFRVFTSGDVVGVEVGGAVKNVIAIAAGMCEGLGLGMNAAAALVTRGLNEVQRLALFLGARSTTLTGLSGVGDTFGTCFGPLSRNRTLGVRLGKGEALKDILESMVEVAEGYATTFSLVQLIEKLPRAHKRERTFPIIYAVKSILDGTHTPQEGVRRLMN 316
            RK   T+ILV         ++A  IN +H+HP+Y++D +   T+ ++ +P+       +I+H +PVQYSR++L  +  ++PP  P++S SKGIE  +L  M DIL ETLG  R  AFLSGPSFA+EI   + T VV+AS+  +LA +   L+S   FRVFTS DV+GVE+GGAVKNVIA+AAGMCEGLGLG NA + LVTRG  E++RL L LGAR +T+ GLSGVGDTFGTCFGPLSRNR  G RLGKGE +++IL S  EVAEG  T+ +LV  I++  + ++ +  +PI++ V  IL G  TP +G++ +MN
Sbjct:   77 RKGFPTTILVRE------QEIADSINTNHTHPRYMRDVKFPPTLRATTNPQDCLPDATYIVHAVPVQYSRKFLNSVKEYIPPGTPVLSGSKGIETSSLGFMADILKETLGEERPYAFLSGPSFAREICDGVATAVVIASEDLLLARDLATLLSDGNFRVFTSRDVIGVEIGGAVKNVIALAAGMCEGLGLGTNAMSGLVTRGCGEMRRLGLTLGARPSTIAGLSGVGDTFGTCFGPLSRNRQFGYRLGKGETMEEILASSSEVAEGVDTSIALVNFIKQNCKGYRLDLKYPILFGVADILQGKLTPLDGLKGIMN 385          
BLAST of NO20G00310 vs. NCBI_GenBank
Match: CEM03367.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 304.7 bits (779), Expect = 3.500e-79
Identity = 159/322 (49.38%), Postives = 220/322 (68.32%), Query Frame = 0
Query:    2 RKKIQTSILVTPFFGWCYAQVAAHINAHHSHPQYLKDFRLADTITSSADPKTAFEGVNFILHCIPVQYSRQYLLQIAPFVPPDVPIISTSKGIEKGTLAMMNDILLETLGA-RELAFLSGPSFAKEIMQELVTCVVVASDSEVLANEAHDLMSSHYFRVFTSGDVVGVEVGGAVKNVIAIAAGMCEGLGLGMNAAAALVTRGLNEVQRLALFLGARSTTLTGLSGVGDTFGTCFGPLSRNRTLGVRLGKGEALKDILESMVEVAEGYATTFSLVQLIEKLPRAHKRERTFPIIYAVKSILDGTHTPQEGVRRLMNSKGRVEL 323
            +KKI T+IL+         + A  IN    HP+YL D R  +++ ++ D   A + V  I+H +PVQ+SR  L  I+  +PP+VP++S SKGIE  TL++M+DIL ETLG  R  AFLSGPSFA+EI++ L T VVVAS  + LA E  +++    F+VFTS DV+GVE+GGAVKNV+AIAAGMCEGL LG NA + +VT G  E++R    +GA+++T +GLSG GD FGTCFGPLSRNR  GVRLG+GE ++DIL S  EVAEG AT  +LV+LI+     ++ +  +PI++A+  I+ G  TP+EG+  +M     V++
Sbjct:  141 QKKIPTTILLRS------QEYAECINTERRHPKYLSDARFPESVRATTDAADALKDVTHIVHAVPVQFSRATLNNISHLIPPNVPVLSVSKGIEANTLSLMSDILEETLGKNRSYAFLSGPSFAREIVRGLATGVVVASTDKRLARELQNILRGEMFQVFTSNDVIGVEIGGAVKNVLAIAAGMCEGLDLGTNAISGIVTSGAMEMRRFGRKMGAKASTFSGLSGAGDLFGTCFGPLSRNRAFGVRLGRGEKVEDILASSSEVAEGVATATALVELIKAKEGGYRIDLKYPIMFAIAEIISGHLTPREGLEEVMKGNSLVDM 456          
BLAST of NO20G00310 vs. NCBI_GenBank
Match: XP_005710380.1 (Glycerol-3-phosphate dehydrogenase [Chondrus crispus] >CDF40086.1 Glycerol-3-phosphate dehydrogenase [Chondrus crispus])

HSP 1 Score: 301.6 bits (771), Expect = 3.000e-78
Identity = 161/303 (53.14%), Postives = 209/303 (68.98%), Query Frame = 0
Query:   20 AQVAAHINAHHSHPQYLKDFRLADTITSSADPKTAFEGVNFILHCIPVQYSRQYLLQIAPFVPPDVPIISTSKGIEKGTLAMMNDILLETLGA-RELAFLSGPSFAKEIMQELVTCVVVASDSEVLANEAHDLMSSHYFRVFTSGDVVGVEVGGAVKNVIAIAAGMCEGLGLGMNAAAALVTRGLNEVQRLALFLGARSTTLTGLSGVGDTFGTCFGPLSRNRTLGVRLGKGEALKDILESMVEVAEGYATTFSLVQLIEKLPRAHKRERTFPIIYAVKSILDGTHTPQEGVRRLMNSKGRVE 322
            A V+  IN  H +P+YL ++ L D +T++ DP  AF      +H +PVQ SR+++  IAPFVPP +P++ TSKG+E   L +M D+L   LG  R+ A+LSGPSFAKEI+Q L T VVVAS     AN   D++SS  F VFTS D VG+EV GA+KNVIAIAAGM +GLGLG N+ AALVTRG +E++R+A+  GA   TL GLSGVGDTF TCFGPLSRNRT+GVRLG+GE L+DIL + +++AEG AT  +L       P A +    +PI+Y V +ILDG  TP+EG+  L+    R E
Sbjct:  107 AWVSDEINMEHRNPKYLSEYLLPDNLTATTDPAAAFRDAKLCVHAVPVQVSREFVTGIAPFVPPHLPVLCTSKGLEISRLELMCDLLPTILGTERKYAYLSGPSFAKEIIQGLPTAVVVASADHTFANSLCDMLSSPSFMVFTSTDTVGLEVAGAIKNVIAIAAGMSDGLGLGTNSMAALVTRGCSEMRRIAIAQGASPVTLAGLSGVGDTFLTCFGPLSRNRTVGVRLGRGEKLEDILSTSMQIAEGVATAKAL-----NSPMAIRASLKYPILYGVAAILDGKITPREGLHMLLAMPPRPE 404          
The following BLAST results are available for this feature:
BLAST of NO20G00310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24210.17.000e-11268.00glycerol-3-phosphate dehydrogenase [Nannochloropsi... [more]
XP_005829771.12.800e-8959.79hypothetical protein GUITHDRAFT_73617 [Guillardia ... [more]
CBJ31247.15.400e-8853.09Glycerol-3-phosphate dehydrogenase [Ectocarpus sil... [more]
XP_002286719.13.900e-8651.71predicted protein, partial [Thalassiosira pseudona... [more]
XP_002177310.13.100e-8352.02predicted protein [Phaeodactylum tricornutum CCAP ... [more]
EJK77600.18.900e-8352.16hypothetical protein THAOC_00555 [Thalassiosira oc... [more]
GAX09887.11.500e-8251.11hypothetical protein FisN_11Lh132 [Fistulifera sol... [more]
GAX14409.12.600e-8251.11hypothetical protein FisN_11Hh132 [Fistulifera sol... [more]
CEM03367.13.500e-7949.38unnamed protein product [Vitrella brassicaformis C... [more]
XP_005710380.13.000e-7853.14Glycerol-3-phosphate dehydrogenase [Chondrus crisp... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002553NSK002553Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594281gene_6239Nannochloropsis oceanica (N. oceanica CCMP1779)gene
GPDgene8235Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00310.1NO20G00310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G00310.2NO20G00310.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G00310.3NO20G00310.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G00310.4NO20G00310.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00310.1NO20G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G00310.2NO20G00310.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G00310.3NO20G00310.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G00310.4NO20G00310.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00310 ID=NO20G00310|Name=NO20G00310|organism=Nannochloropsis oceanica|type=gene|length=3518bp
TGCCCTGCTCATCTTAGAAAAAATTCAACATCGCATCTACTTGTTTTTAA
CGCTTCATTCCCTTGCCGTTCAGCGACAAGACCAGCACTAGCATCTGCCA
AAGCTTCTCACAAGTCATGGTGGATGGCGAGCCTCCTCTCAAGCAGCCCC
GCATTGGTCACTCCTCGTCGTTGATCGAGATGGAACCTGCAGAGCAAGCA
TCTGCGAAAGCGTTGCCATCTACAACGAAGgtacggtgagggttttaagt
gtcctcctgtacgcatcttacaattcactcttacatgtctgtagcgtgta
gaacatatgttccaatggcatcgttttccttttgcttgtccgtctagttt
cgcaatgcaaccatccataggacgtcctttccatccctcccaacctaaag
GTCGCAGTCATCGGCGGGGGTTCATTCGGCCTGGCCATGGCCTCAATCGT
AGGAAGAAAAGGCATCCCAACGTGCATTCTCGTGCGGAAAGAGGAGgttc
gtgggtgtaatgagggttggttgggaagagaaggaggggagaaagggaga
agcttaagaatgcaaggaggaaggtctggaattgtagcttcatttctttc
agcccaaataaagacaggtaagtttaatttccatgcgcaaaaaaattcaa
acctccattttagtcacacccttctttggttggtgctatgcacagGTTGC
CGCGCATATCAATGCCCATCATTCCCATCCTCAGTACTTGAAAGACTTCC
GCCTGGCGGACACAATTACTTCCAGCGCCGATCCCAAGgtagagggtcac
cacgggggggaaggaaagagagatggggtgcgggaagaagaaataaatcg
atggtatagacccccttgtctgaggaaaggaacgtatgcagcagataaac
ctgtcctagacctacacaaatactctctgcccttttctcctctctttcta
cctctagACTGCCTTCGAGGGCGTCAACTTCATATTGCATTGCATCCCTG
TGCAATACTCGCGGCAGTACCTGCTTCAAATCGCTCCCTTCGTCCCCCCA
GATGTGCCCATCATCTCCACGTCCAAGgtgagggagggagggagggaggg
aggaagggagggaaggaggggtggacagggaagtatagcagtagaaactt
cccgccatatcccttgtacatctagttataggtaaacatctcgaccatca
atcatcctccttccttccctccctccctccctctcttcttccctccctcc
ctccctccctccctccctccctccctccctccctccctccctccctccct
ccctccctccctccctccctccctccctccctccctccctccctccctcc
ctccctccctccctccctccctccctccctccctccctccctccctccct
ttctccctccttccctccctctctccctccttccctccattttctgcagG
GAATTGAGAAGGGCACGCTCGCGATGATGAACGACATCTTGCTTGAAACG
CTGGGGGCTCGGGAGCTGGCCTTCTTGTCCGGGCCTTCATTCGCTAAgta
gggagggagggagggagggagggagggagggagggagggagggagggagg
gagggagggaggagaggggagaaaagggagaggaggaggcggcggtccaa
tggatgggacgtaagagacagaacaaaaggaggagcagcagctctaatga
gactccttcaatttaacgggcgagctctttcaccatcgatatcaacttcc
gttgttccctccctccctccctccttccgtcctcagAGAAATAATGCAGG
AGCTGGTCACATGTGTGGTGGTCGCCTCTGACAGCGAGGTCTTAGCAAAC
GAGGCGCATGACCTTATGTCCTCTCACTACTTCCGAGTCTTCACTTCGGG
AGATGTGGTGGGGGTGGAGgtgaggaggaagcggagggagggagggaggg
agggagggagggagggaggtcggtcggtcttggagggatgatctttgatc
tccattcttcaaagcatgcctctctttcctcaagctatttcacttcctct
atttttgcgcgctctacatccattggccatgcattcagGTGGGCGGAGCG
GTCAAAAACGTCATTGCCATCGCTGCCGGCATGTGCGAGGGCCTGGGTCT
CGgtaagcccccccttccctcctcctctcattcctctccttccctacttc
cctctttaatttctaactctactctccctccttccctcccccgcccgatc
tcacctttctgccttcccccctccctcactccctccctccctttcccccc
cctccctcccttcctagGCATGAACGCGGCCGCTGCCTTAGTCACGCGGG
GGCTGAATGAGGTGCAGCGTCTGGCCCTTTTTTTAGGGGCGCGTTCAACC
ACACTGACGGgtgcgtcatgacgaaagcagccaccccctcgttccctctg
tttcttcctttcctttttccctccctttttccctcccccctccctctcgc
cctcctcgtagacacctccctccctccctccctccctccctccttccctc
ccgccctagGTCTAAGTGGAGTCGGTGACACCTTTGGCACGTGTTTTGGA
CCTCTTTCGCGCAATCGCACGCTGGGCGTCCGCCTGGGGAAGGGGGAGGC
GTTGAAAGACATACTGGAATCCATGGTCGAGgtgagggagggaggtgagg
gagggacaacggggaggggagggccttcccagcagtagtacagaatctgt
ccgtgtgagagcgctccccaaagcgccaagacgcacacaccacctacctt
ctcagccactcttttcctcctccttccaaccctttcctccctcgcctttc
cctttttcccacctgacccttccatgcaagGTCGCCGAGGGTTATGCGAC
TACCTTCTCACTCGTCCAGCTCATCGAGAAGCTGCCCCGTGCCCATAAAC
GAGAGCGCACGTTTCCGATAATTTATGCCGTTAAATCCATCCTAGACGGG
ACGCACACGCCGCAGGAGGGGGTCAGgtgcgtcgagcaagaagagggatg
gaaggaaggaaggaaggaagggagagaggaatactgagatgaccggaaat
gccttcatctatacatgtgacgtcacagGCGCCTCATGAACTCCAAGGGA
CGGGTCGAGCTGTGGAACCTGTGAGGGTCTTTTTTCAAAGGAAAGGGTGC
GATGATTAATTGATTGGAAGCGCGGATAACCTAATACACCACACCGGGGA
TTAAGAGAAACATATTGGAAAGAAGTTACTTCACACCCGAGTCTCCGAGG
CCTCCTCCCCCTGCCAATCTGTCCTGGTGGAGATGACCTGCTGGCGAAGC
CAAGAATCAAAGTAAAAGCACCGAGAGCCTCGGCTTCTTTGCGGTCTTGC
TGATCGTATGGCTGGAGGGCATAGAGATTCTTTCAGAAGAAGAATGGTAG
CATCTCCCTGGAAATAAGGAGGAGGCCTCGAAGGGGGAAATAAGAAATAG
AGCACAGTATTCTAGAGG
back to top

protein sequence of NO20G00310.1

>NO20G00310.1-protein ID=NO20G00310.1-protein|Name=NO20G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MVDGEPPLKQPRIGHSSSLIEMEPAEQASAKALPSTTKVAVIGGGSFGLA
MASIVGRKGIPTCILVRKEEVAAHINAHHSHPQYLKDFRLADTITSSADP
KTAFEGVNFILHCIPVQYSRQYLLQIAPFVPPDVPIISTSKGIEKGTLAM
MNDILLETLGARELAFLSGPSFAKEIMQELVTCVVVASDSEVLANEAHDL
MSSHYFRVFTSGDVVGVEVGGAVKNVIAIAAGMCEGLGLGMNAAAALVTR
GLNEVQRLALFLGARSTTLTGLSGVGDTFGTCFGPLSRNRTLGVRLGKGE
ALKDILESMVEVAEGYATTFSLVQLIEKLPRAHKRERTFPIIYAVKSILD
GTHTPQEGVRRLMNSKGRVELWNL*
back to top

protein sequence of NO20G00310.2

>NO20G00310.2-protein ID=NO20G00310.2-protein|Name=NO20G00310.2|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MRKKIQTSILVTPFFGWCYAQVAAHINAHHSHPQYLKDFRLADTITSSAD
PKTAFEGVNFILHCIPVQYSRQYLLQIAPFVPPDVPIISTSKGIEKGTLA
MMNDILLETLGARELAFLSGPSFAKEIMQELVTCVVVASDSEVLANEAHD
LMSSHYFRVFTSGDVVGVEVGGAVKNVIAIAAGMCEGLGLGMNAAAALVT
RGLNEVQRLALFLGARSTTLTGLSGVGDTFGTCFGPLSRNRTLGVRLGKG
EALKDILESMVEVAEGYATTFSLVQLIEKLPRAHKRERTFPIIYAVKSIL
DGTHTPQEGVRRLMNSKGRVELWNL*
back to top

protein sequence of NO20G00310.3

>NO20G00310.3-protein ID=NO20G00310.3-protein|Name=NO20G00310.3|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MVDGEPPLKQPRIGHSSSLIEMEPAEQASAKALPSTTKVAVIGGGSFGLA
MASIVGRKGIPTCILVRKEEVAAHINAHHSHPQYLKDFRLADTITSSADP
KTAFEGVNFILHCIPVQYSRQYLLQIAPFVPPDVPIISTSKGIEKGTLAM
MNDILLETLGARELAFLSGPSFAKEIMQELVTCVVVASDSEVLANEAHDL
MSSHYFRVFTSGDVVGVEVGGAVKNVIAIAAGMCEGLGLGMNAAAALVTR
GLNEVQRLALFLGARSTTLTGAS*
back to top

protein sequence of NO20G00310.4

>NO20G00310.4-protein ID=NO20G00310.4-protein|Name=NO20G00310.4|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MVDGEPPLKQPRIGHSSSLIEMEPAEQASAKALPSTTKVAVIGGGSFGLA
MASIVGRKGIPTCILVRKEEVAAHINAHHSHPQYLKDFRLADTITSSADP
KTAFEGVNFILHCIPVQYSRQYLLQIAPFVPPDVPIISTSKGIEKGTLAM
MNDILLETLGARELAFLSGPSFAKEIMQELVTCVVVASDSEVLANEAHDL
MSSHYFRVFTSGDVVGVEVGGAVKNVIAIAAGMCEGLGLGMNAAAALVTR
GLNEVQRLALFLGARSTTLTGAS*
back to top
Synonyms
Publications