jgi.p|Nanoce1779_2|594281, gene_6239 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594281
Unique Namegene_6239
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_15:104371..108261 +

Link to JBrowse

Properties
Property NameValue
TranscriptId594367
ProteinId594281
Product name6-phosphogluconate dehydrogenase, C-terminal-like protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:104371..108261 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0009331glycerol-3-phosphate dehydrogenase complex
Vocabulary: Molecular Function
TermDefinition
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287NAD binding
GO:0016491oxidoreductase activity
GO:0004367glycerol-3-phosphate dehydrogenase [NAD+] activity
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
Vocabulary: Biological Process
TermDefinition
GO:0046168glycerol-3-phosphate catabolic process
GO:0006072glycerol-3-phosphate metabolic process
GO:0005975carbohydrate metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL020ncniL020Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00310NO20G00310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594281mRNA_6239-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594281mRNA_6239Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|594281

>mRNA_6239-protein ID=mRNA_6239-protein|Name=jgi.p|Nanoce1779_2|594281|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MRKKNQTSILVTPFFGWCYAQVAAHINAHHSHPQYLKDFRLADTITSSAD
PKTAFEGVNFILHCIPVQYSRQYLLQIAPFVPPDVPIISTSKGIEKGTLA
MMNDILLETLGARELAFLSGPSFAKEIMQELVTCVVVASDSEVLANEAHD
LMSSHYFRVFTSGDVVGVEVGGAVKNVIAIAAGMCEGLGLGMNAAAALVT
RGLNEVQRLALFLGARSTTLTGLSGVGDTFGTCFGPLSRNRTLGVRLGKG
EALKDILESMVEVAEGYATTFSLVQLIEKLPRAHKRERTFPIIYAVKSIL
DGTHTPQEGVRRLMNSKGRVELWNL*
back to top
Synonyms
Publications