NO20G00210, NO20G00210 (gene) Nannochloropsis oceanica

Overview
NameNO20G00210
Unique NameNO20G00210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1858
Alignment locationchr20:72940..74797 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:72940..74797 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO20G00210 vs. NCBI_GenBank
Match: EWM22216.1 (hypothetical protein Naga_100337g3 [Nannochloropsis gaditana])

HSP 1 Score: 102.4 bits (254), Expect = 2.300e-18
Identity = 76/211 (36.02%), Postives = 93/211 (44.08%), Query Frame = 0 
Query:   77 PVAYTSKDTTVR------PRRVXXXXXXXXXXXXXXXXXXXXVRWADAALLEEIFPFFTDQPVDPTAPPIGMTPSASSPRS-------YSFSSDMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLKHASWETVVVTRKKKNKPLVSLPLMEGKWANSPPSSSSEAETPAAAAAGMGK--PYDPAGFEFFCDACHYTLVEGEVRY 273
            P AYTS D  +R      P++                     VRWADAALLEE+FPFF D PVDP AP     P +SS  S         F+  M+                                  G +HASW+TV V  ++K+ P  S PL +G+WA+ P  SSS A  PA       K    + + FEFFCDAC YTL E EVRY
Sbjct:   61 PTAYTSFDKRLRLPRLTSPQKRPREGKGKNEGPRKGKRKVKHVRWADAALLEEVFPFFMDSPVDPFAPRGASEPLSSSSASPVHPGEQEGFNPSMQALVAHPTSPSMGAGTPTLDGEARTGEEVGGENGAGFRHASWQTVSVVTRRKDMPSSSPPL-QGRWAH-PLPSSSPAPDPARRENVRAKEDQEESSAFEFFCDACLYTLEEDEVRY 269
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BLAST of NO20G00210 vs. NCBI_GenBank
Match: XP_005853937.1 (hypothetical protein NGA_0461400 [Nannochloropsis gaditana CCMP526] >EKU22426.1 hypothetical protein NGA_0461400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 99.4 bits (246), Expect = 2.000e-17
Identity = 74/210 (35.24%), Postives = 92/210 (43.81%), Query Frame = 0 
Query:   77 PVAYTSKDTTVR------PRRVXXXXXXXXXXXXXXXXXXXXVRWADAALLEEIFPFFTDQPVDPTAPPIGMTPSASSPRS-------YSFSSDMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLKHASWETVVVTRKKKNKPLVSLPLMEGKWANSPPSSSSEAETPAAAAAGMGK--PYDPAGFEFFCDACHYTLVEGEVR 272
            P AYTS D  +R      P++                     VRWADAALLEE+FPFF D PVDP AP     P +SS  S         F+  M+                                  G +HASW+TV V  ++K+ P  S PL +G+WA+ P  SSS A  PA       K    + + FEFFCDAC YTL E E+R
Sbjct:   61 PTAYTSFDKRLRLPRLTSPQKRPREGKGKNEGPRKGKRKVKHVRWADAALLEEVFPFFMDSPVDPFAPRGASEPLSSSSASPVHPGEQEGFNPSMQALVAHPTSPSMGAGTPTLDGEARTGEEVGGENGAGFRHASWQTVSVVTRRKDMPSSSPPL-QGRWAH-PLPSSSPAPDPARRENVRAKEDQEESSAFEFFCDACLYTLEEDEIR 268
The following BLAST results are available for this feature:
BLAST of NO20G00210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22216.12.300e-1836.02hypothetical protein Naga_100337g3 [Nannochloropsi... [more]
XP_005853937.12.000e-1735.24hypothetical protein NGA_0461400 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002545NSK002545Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00210.1NO20G00210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G00210.2NO20G00210.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G00210.3NO20G00210.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631407gene_6231Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100337g3gene8227Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00210.1NO20G00210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G00210.2NO20G00210.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G00210.3NO20G00210.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00210 ID=NO20G00210|Name=NO20G00210|organism=Nannochloropsis oceanica|type=gene|length=1858bp
TCAACCGACGACGTGTCCTTCCTTGCATCCTCCTTCCTTTCTCACAGGAC
AGCCCACGCCCAGCAAACACTCAGGGAGCCTCGATAGCAACAGAAACAGT
AGGAGTAGTTGCAGTGGAAGGAAGCGATGGAGgtacgtgcattgctgggt
attttctaccaccccccacccccccctcctctcctctgacctcctaccct
accccacactctgcttgtgctgtgctgccaccatatgcagGGCCTGTTGA
CCTACCTTGACGAGGAGGAGGAGGAAGTCGGGGTAGAGGAGGGCAAAAAG
GGTCATCTTTGGAGTCTTTCCAGAAAGGAAGAGGGAGTCCGCCTGGAAGC
GAACGAGGAGACGGAGCGGTCGGGACTGCACTCTCTTGCCTCCTTTCCTA
CTCTTGCCGCTTTCTCTCCTACCCTCCCTCAACTGTCTCTCCCTCCGGCT
CCACCCCCTTTTCCGGTTGCCTATACAAGCAAGGATACCACTGTCAGGCC
TCGTCGGGTGGAAAAAAAGTCAAGAAAGCGGCCACGGGATGGGAATGGAG
GAGGGGGAGGAGGGAGGGGTGTGAGATGGGCTGATGCAGCATTATTAGAG
GAAATTTTTCCATTCTTCACGGACCAACCAGTGGgtaggtaaagaaaggg
aaggcggcaggaggagaggaaggaaagatgagggaaatgccgtgcagcca
ggcgaagctgcgcattgctccagcgagtacttctcatccctcattggaca
catcacctcttccattctcttccctcatgacccccccttcccttttagAC
CCCACCGCTCCTCCTATCGGAATGACACCCTCTGCATCCTCTCCCCGATC
CTACTCCTTCTCAAGCGACATGGAGGAAGACGAGGAGGCGGCTTCATCCT
CTATGCATGGCCCAACATCCACAGGTCGCCCTTCCCTCTCCCATTCCTCT
TCCTCCTCATCGAGCAACGGTGTAGGCGGCTTGAAGCACGCATCCTGGGA
GACGGTAGTTGTGACCCGGAAGAAGAAAAACAAACCTTTGGTCTCCCTAC
CCCTCATGGAGGGAAAGTGGGCGAATTCTCCTCCTTCCTCTTCCTCGGAG
GCAGAGACACCCGCAGCAGCTGCAGCAGGAATGGGCAAGCCGTATGATCC
TGCTGGGTTTGAATTTTTCTGTGACGCGTGTCACTATACGTTGGTGGAAG
GGGAAGTAAGgtacgtgtggatgcggtggggcccaaaaaagggagacggg
gattggacatagttggggcttcgatcttgtctctgtcgctttgttactcc
gttgcctttctgcccttcttgcctatcacttctattatgcattgtatatt
atgctctttatttgtgctaactatctttaccaccccttttccacttgttt
ccgcccttcctcccgtctctttctctctctccccctccctcctcctcttc
ttttatccccttcttgctccccagGTACGAATGCCAAGTATGTCCAAACG
AGTTCTGCCTGTGCCGCTCATGCTTTGCTTCTCCCTCTTCTTCCTCTTCT
TCGTCTTCAGCTATTTCTCACCCTCACCCTTGTGTGGCAAACACGCGGAC
GTACCACATTTCTTTCCTCGTCAAGGACAAGAGGGACGGTGGAAGGGAGG
AGGAAGATGAGGACAATAACGGGCACGATAAAGAGCAGAAAAGAGCTAAG
GATGCACAGGAAGAGAAACAAGAGGAGGAAGAAGAAGAGGAGGAGGATAT
AGGTCCTCTGTTGGGGTCAGGGGGAGGGCCACGATTTGGTGGACTTACAT
ATGCAGGCTCGTTGTGAGGGAGGAGAGATGAATAGATTCTAACTGTAGCT
TCTTCGCA
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protein sequence of NO20G00210.1

>NO20G00210.1-protein ID=NO20G00210.1-protein|Name=NO20G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MEGLLTYLDEEEEEVGVEEGKKGHLWSLSRKEEGVRLEANEETERSGLHS
LASFPTLAAFSPTLPQLSLPPAPPPFPVAYTSKDTTVRPRRVEKKSRKRP
RDGNGGGGGGRGVRWADAALLEEIFPFFTDQPVDPTAPPIGMTPSASSPR
SYSFSSDMEEDEEAASSSMHGPTSTGRPSLSHSSSSSSSNGVGGLKHASW
ETVVVTRKKKNKPLVSLPLMEGKWANSPPSSSSEAETPAAAAAGMGKPYD
PAGFEFFCDACHYTLVEGEVRYECQVCPNEFCLCRSCFASPSSSSSSSSA
ISHPHPCVANTRTYHISFLVKDKRDGGREEEDEDNNGHDKEQKRAKDAQE
EKQEEEEEEEEDIGPLLGSGGGPRFGGLTYAGSL*
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protein sequence of NO20G00210.2

>NO20G00210.2-protein ID=NO20G00210.2-protein|Name=NO20G00210.2|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MREMPCSQAKLRIAPASTSHPSLDTSPLPFSSLMTPPSLLDPTAPPIGMT
PSASSPRSYSFSSDMEEDEEAASSSMHGPTSTGRPSLSHSSSSSSSNGVG
GLKHASWETVVVTRKKKNKPLVSLPLMEGKWANSPPSSSSEAETPAAAAA
GMGKPYDPAGFEFFCDACHYTLVEGEVRYECQVCPNEFCLCRSCFASPSS
SSSSSSAISHPHPCVANTRTYHISFLVKDKRDGGREEEDEDNNGHDKEQK
RAKDAQEEKQEEEEEEEEDIGPLLGSGGGPRFGGLTYAGSL*
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protein sequence of NO20G00210.3

>NO20G00210.3-protein ID=NO20G00210.3-protein|Name=NO20G00210.3|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MEGLLTYLDEEEEEVGVEEGKKGHLWSLSRKEEGVRLEANEETERSGLHS
LASFPTLAAFSPTLPQLSLPPAPPPFPVAYTSKDTTVRPRRVEKKSRKRP
RDGNGGGGGGRGVRWADAALLEEIFPFFTDQPVDPTAPPIGMTPSASSPR
SYSFSSDMEEDEEAASSSMHGPTSTGRPSLSHSSSSSSSNGVGGLKHASW
ETVVVTRKKKNKPLVSLPLMEGKWANSPPSSSSEAETPAAAAAGMGKPYD
PAGFEFFCDACHYTLVEGEVRYVWMRWGPKKGDGDWT*
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Synonyms
Publications