NO20G00210.3, NO20G00210.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00210.3
Unique NameNO20G00210.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1586
Alignment locationchr20:72940..74797 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:72940..74797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G00210.3 vs.
Match: EWM22216.1 (hypothetical protein Naga_100337g3 [Nannochloropsis gaditana])

HSP 1 Score: 127.5 bits (319), Expect = 6.700e-26
Identity = 115/288 (39.93%), Postives = 146/288 (50.69%), Query Frame = 0 
Query:    1 MEGLLTYLDEEEEEVGVEEGKKGHLWSLSRKEEGVRLEANEETERSGLHSLASFPTLAAFSPTLPQLSLPPAPPPFPVAYTSKDTTVRPRRVEKKSRKRPRDGNGGGGGGRG-------VRWADAALLEEIFPFFTDQPVDPTAPPIGMTPSASSPRSYSFSSDMEEDEEAASSSMHGPTS----TGRPSLSHSSSSSSSNG---VGGLKHASWETVVVTRKKKNKPLVSLPLMEGKWANSPPSSSSEAETPAAAAAGMGK--PYDPAGFEFFCDACHYTLVEGEVRY 273
            MEGLL YL+EEEEE   E+ +   +   S K E     +NE  + SGL   AS  T+     +L            P AYTS D  +R  R+    +KRPR+G G   G R        VRWADAALLEE+FPFF D PVDP AP     P +SS  S     + E    +  + +  PTS     G P+L   + +    G     G +HASW+TV V  ++K+ P  S PL +G+WA+ P  SSS A  PA       K    + + FEFFCDAC YTL E EVRY
Sbjct:    1 MEGLLHYLEEEEEEKDKEDKEDKEV---SNKPEKGSDGSNEAAKPSGLPRSAS--TMEDNRGSL-----------LPTAYTSFDKRLRLPRLTSP-QKRPREGKGKNEGPRKGKRKVKHVRWADAALLEEVFPFFMDSPVDPFAPRGASEPLSSSSASPVHPGEQEGFNPSMQALVAHPTSPSMGAGTPTLDGEARTGEEVGGENGAGFRHASWQTVSVVTRRKDMPSSSPPL-QGRWAH-PLPSSSPAPDPARRENVRAKEDQEESSAFEFFCDACLYTLEEDEVRY 269
The following BLAST results are available for this feature:
BLAST of NO20G00210.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22216.16.700e-2639.93hypothetical protein Naga_100337g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00210NO20G00210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00210.3NO20G00210.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00210.3.cds1NO20G00210.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00210.3.cds2NO20G00210.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00210.3.cds3NO20G00210.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00210.3 ID=NO20G00210.3|Name=NO20G00210.3|organism=Nannochloropsis oceanica|type=mRNA|length=1586bp
TCAACCGACGACGTGTCCTTCCTTGCATCCTCCTTCCTTTCTCACAGGAC
AGCCCACGCCCAGCAAACACTCAGGGAGCCTCGATAGCAACAGAAACAGT
AGGAGTAGTTGCAGTGGAAGGAAGCGATGGAGGGCCTGTTGACCTACCTT
GACGAGGAGGAGGAGGAAGTCGGGGTAGAGGAGGGCAAAAAGGGTCATCT
TTGGAGTCTTTCCAGAAAGGAAGAGGGAGTCCGCCTGGAAGCGAACGAGG
AGACGGAGCGGTCGGGACTGCACTCTCTTGCCTCCTTTCCTACTCTTGCC
GCTTTCTCTCCTACCCTCCCTCAACTGTCTCTCCCTCCGGCTCCACCCCC
TTTTCCGGTTGCCTATACAAGCAAGGATACCACTGTCAGGCCTCGTCGGG
TGGAAAAAAAGTCAAGAAAGCGGCCACGGGATGGGAATGGAGGAGGGGGA
GGAGGGAGGGGTGTGAGATGGGCTGATGCAGCATTATTAGAGGAAATTTT
TCCATTCTTCACGGACCAACCAGTGGACCCCACCGCTCCTCCTATCGGAA
TGACACCCTCTGCATCCTCTCCCCGATCCTACTCCTTCTCAAGCGACATG
GAGGAAGACGAGGAGGCGGCTTCATCCTCTATGCATGGCCCAACATCCAC
AGGTCGCCCTTCCCTCTCCCATTCCTCTTCCTCCTCATCGAGCAACGGTG
TAGGCGGCTTGAAGCACGCATCCTGGGAGACGGTAGTTGTGACCCGGAAG
AAGAAAAACAAACCTTTGGTCTCCCTACCCCTCATGGAGGGAAAGTGGGC
GAATTCTCCTCCTTCCTCTTCCTCGGAGGCAGAGACACCCGCAGCAGCTG
CAGCAGGAATGGGCAAGCCGTATGATCCTGCTGGGTTTGAATTTTTCTGT
GACGCGTGTCACTATACGTTGGTGGAAGGGGAAGTAAGGTACGTGTGGAT
GCGGTGGGGCCCAAAAAAGGGAGACGGGGATTGGACATAGTTGGGGCTTC
GATCTTGTCTCTGTCGCTTTGTTACTCCGTTGCCTTTCTGCCCTTCTTGC
CTATCACTTCTATTATGCATTGTATATTATGCTCTTTATTTGTGCTAACT
ATCTTTACCACCCCTTTTCCACTTGTTTCCGCCCTTCCTCCCGTCTCTTT
CTCTCTCTCCCCCTCCCTCCTCCTCTTCTTTTATCCCCTTCTTGCTCCCC
AGGTACGAATGCCAAGTATGTCCAAACGAGTTCTGCCTGTGCCGCTCATG
CTTTGCTTCTCCCTCTTCTTCCTCTTCTTCGTCTTCAGCTATTTCTCACC
CTCACCCTTGTGTGGCAAACACGCGGACGTACCACATTTCTTTCCTCGTC
AAGGACAAGAGGGACGGTGGAAGGGAGGAGGAAGATGAGGACAATAACGG
GCACGATAAAGAGCAGAAAAGAGCTAAGGATGCACAGGAAGAGAAACAAG
AGGAGGAAGAAGAAGAGGAGGAGGATATAGGTCCTCTGTTGGGGTCAGGG
GGAGGGCCACGATTTGGTGGACTTACATATGCAGGCTCGTTGTGAGGGAG
GAGAGATGAATAGATTCTAACTGTAGCTTCTTCGCA
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protein sequence of NO20G00210.3

>NO20G00210.3-protein ID=NO20G00210.3-protein|Name=NO20G00210.3|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MEGLLTYLDEEEEEVGVEEGKKGHLWSLSRKEEGVRLEANEETERSGLHS
LASFPTLAAFSPTLPQLSLPPAPPPFPVAYTSKDTTVRPRRVEKKSRKRP
RDGNGGGGGGRGVRWADAALLEEIFPFFTDQPVDPTAPPIGMTPSASSPR
SYSFSSDMEEDEEAASSSMHGPTSTGRPSLSHSSSSSSSNGVGGLKHASW
ETVVVTRKKKNKPLVSLPLMEGKWANSPPSSSSEAETPAAAAAGMGKPYD
PAGFEFFCDACHYTLVEGEVRYVWMRWGPKKGDGDWT*
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mRNA from alignment at chr20:72940..74797+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00210.3 ID=NO20G00210.3|Name=NO20G00210.3|organism=Nannochloropsis oceanica|type=mRNA|length=1858bp|location=Sequence derived from alignment at chr20:72940..74797+ (Nannochloropsis oceanica)
TCAACCGACGACGTGTCCTTCCTTGCATCCTCCTTCCTTTCTCACAGGAC
AGCCCACGCCCAGCAAACACTCAGGGAGCCTCGATAGCAACAGAAACAGT
AGGAGTAGTTGCAGTGGAAGGAAGCGATGGAGGTACGTGCATTGCTGGGT
ATTTTCTACCACCCCCCACCCCCCCCTCCTCTCCTCTGACCTCCTACCCT
ACCCCACACTCTGCTTGTGCTGTGCTGCCACCATATGCAGGGCCTGTTGA
CCTACCTTGACGAGGAGGAGGAGGAAGTCGGGGTAGAGGAGGGCAAAAAG
GGTCATCTTTGGAGTCTTTCCAGAAAGGAAGAGGGAGTCCGCCTGGAAGC
GAACGAGGAGACGGAGCGGTCGGGACTGCACTCTCTTGCCTCCTTTCCTA
CTCTTGCCGCTTTCTCTCCTACCCTCCCTCAACTGTCTCTCCCTCCGGCT
CCACCCCCTTTTCCGGTTGCCTATACAAGCAAGGATACCACTGTCAGGCC
TCGTCGGGTGGAAAAAAAGTCAAGAAAGCGGCCACGGGATGGGAATGGAG
GAGGGGGAGGAGGGAGGGGTGTGAGATGGGCTGATGCAGCATTATTAGAG
GAAATTTTTCCATTCTTCACGGACCAACCAGTGGGTAGGTAAAGAAAGGG
AAGGCGGCAGGAGGAGAGGAAGGAAAGATGAGGGAAATGCCGTGCAGCCA
GGCGAAGCTGCGCATTGCTCCAGCGAGTACTTCTCATCCCTCATTGGACA
CATCACCTCTTCCATTCTCTTCCCTCATGACCCCCCCTTCCCTTTTAGAC
CCCACCGCTCCTCCTATCGGAATGACACCCTCTGCATCCTCTCCCCGATC
CTACTCCTTCTCAAGCGACATGGAGGAAGACGAGGAGGCGGCTTCATCCT
CTATGCATGGCCCAACATCCACAGGTCGCCCTTCCCTCTCCCATTCCTCT
TCCTCCTCATCGAGCAACGGTGTAGGCGGCTTGAAGCACGCATCCTGGGA
GACGGTAGTTGTGACCCGGAAGAAGAAAAACAAACCTTTGGTCTCCCTAC
CCCTCATGGAGGGAAAGTGGGCGAATTCTCCTCCTTCCTCTTCCTCGGAG
GCAGAGACACCCGCAGCAGCTGCAGCAGGAATGGGCAAGCCGTATGATCC
TGCTGGGTTTGAATTTTTCTGTGACGCGTGTCACTATACGTTGGTGGAAG
GGGAAGTAAGGTACGTGTGGATGCGGTGGGGCCCAAAAAAGGGAGACGGG
GATTGGACATAGTTGGGGCTTCGATCTTGTCTCTGTCGCTTTGTTACTCC
GTTGCCTTTCTGCCCTTCTTGCCTATCACTTCTATTATGCATTGTATATT
ATGCTCTTTATTTGTGCTAACTATCTTTACCACCCCTTTTCCACTTGTTT
CCGCCCTTCCTCCCGTCTCTTTCTCTCTCTCCCCCTCCCTCCTCCTCTTC
TTTTATCCCCTTCTTGCTCCCCAGGTACGAATGCCAAGTATGTCCAAACG
AGTTCTGCCTGTGCCGCTCATGCTTTGCTTCTCCCTCTTCTTCCTCTTCT
TCGTCTTCAGCTATTTCTCACCCTCACCCTTGTGTGGCAAACACGCGGAC
GTACCACATTTCTTTCCTCGTCAAGGACAAGAGGGACGGTGGAAGGGAGG
AGGAAGATGAGGACAATAACGGGCACGATAAAGAGCAGAAAAGAGCTAAG
GATGCACAGGAAGAGAAACAAGAGGAGGAAGAAGAAGAGGAGGAGGATAT
AGGTCCTCTGTTGGGGTCAGGGGGAGGGCCACGATTTGGTGGACTTACAT
ATGCAGGCTCGTTGTGAGGGAGGAGAGATGAATAGATTCTAACTGTAGCT
TCTTCGCA
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Coding sequence (CDS) from alignment at chr20:72940..74797+

>NO20G00210.3 ID=NO20G00210.3|Name=NO20G00210.3|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at chr20:72940..74797+ (Nannochloropsis oceanica)
ATGGAGGGCCTGTTGACCTACCTTGACGAGGAGGAGGAGGAAGTCGGGGT
AGAGGAGGGCAAAAAGGGTCATCTTTGGAGTCTTTCCAGAAAGGAAGAGG
GAGTCCGCCTGGAAGCGAACGAGGAGACGGAGCGGTCGGGACTGCACTCT
CTTGCCTCCTTTCCTACTCTTGCCGCTTTCTCTCCTACCCTCCCTCAACT
GTCTCTCCCTCCGGCTCCACCCCCTTTTCCGGTTGCCTATACAAGCAAGG
ATACCACTGTCAGGCCTCGTCGGGTGGAAAAAAAGTCAAGAAAGCGGCCA
CGGGATGGGAATGGAGGAGGGGGAGGAGGGAGGGGTGTGAGATGGGCTGA
TGCAGCATTATTAGAGGAAATTTTTCCATTCTTCACGGACCAACCAGTGG
ACCCCACCGCTCCTCCTATCGGAATGACACCCTCTGCATCCTCTCCCCGA
TCCTACTCCTTCTCAAGCGACATGGAGGAAGACGAGGAGGCGGCTTCATC
CTCTATGCATGGCCCAACATCCACAGGTCGCCCTTCCCTCTCCCATTCCT
CTTCCTCCTCATCGAGCAACGGTGTAGGCGGCTTGAAGCACGCATCCTGG
GAGACGGTAGTTGTGACCCGGAAGAAGAAAAACAAACCTTTGGTCTCCCT
ACCCCTCATGGAGGGAAAGTGGGCGAATTCTCCTCCTTCCTCTTCCTCGG
AGGCAGAGACACCCGCAGCAGCTGCAGCAGGAATGGGCAAGCCGTATGAT
CCTGCTGGGTTTGAATTTTTCTGTGACGCGTGTCACTATACGTTGGTGGA
AGGGGAAGTAAGGTACGTGTGGATGCGGTGGGGCCCAAAAAAGGGAGACG
GGGATTGGACATAG
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Synonyms
Publications