NO20G00150, NO20G00150 (gene) Nannochloropsis oceanica

Overview
NameNO20G00150
Unique NameNO20G00150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5476
Alignment locationchr20:52171..57646 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:52171..57646 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO20G00150 vs. NCBI_GenBank
Match: EWM22218.1 (hypothetical protein Naga_100555g1 [Nannochloropsis gaditana])

HSP 1 Score: 299.7 bits (766), Expect = 2.300e-77
Identity = 160/267 (59.93%), Postives = 185/267 (69.29%), Query Frame = 0 
Query:  301 IRVRHENTLFLLFQIYFAQRQIWTGDTEEERERSKRQAVEEVLPSLRFPRMSSDFLSDVVAHSSLFCDSPSASHLLIEALTYKSLSRLRQDRWICLVRNELRLEQRIPELKHNQEVGIKSTDSEQSILMHVYP-----KPVKSDVFTGTDVETCYSRLRDRVSLRRQMDFVSFSVDFPLQSCQAMNPTQAISSDVHECCGYLWTVQLVRLPDPATAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPCSPRDRMGLWLHLLPMKP 563
            IRVRHENTLFLLFQIYFAQ++ W GDT EERE+S+R AVEEVLPSLRFPRMSSDFLSDVVAHSSLF +SPSA+HLL+EAL YKSLSRLRQDRWI LVRNELR+E +  + K NQ+ GIK   SE    +          PVKS+ F GTDVE+C+SRL+DR ++  Q  F++F+VDF LQ+C  + P Q + S VHECCGYLWTVQLVRLP  + APP                                S  DRMGLWLHLLPMKP
Sbjct:   64 IRVRHENTLFLLFQIYFAQKEDWQGDTPEEREKSRRAAVEEVLPSLRFPRMSSDFLSDVVAHSSLFAESPSATHLLVEALAYKSLSRLRQDRWIRLVRNELRIEHKAAQFKINQKAGIKPCPSEVQAAVREAESASSFNPVKSEPFRGTDVESCFSRLQDRTAV-LQSQFITFAVDFSLQACLQLQPNQGLFSAVHECCGYLWTVQLVRLPIASIAPPSNPQAIRPSPSTCFTP----------------SSSDRMGLWLHLLPMKP 313
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BLAST of NO20G00150 vs. NCBI_GenBank
Match: XP_005854424.1 (hypothetical protein NGA_0235700, partial [Nannochloropsis gaditana CCMP526] >EKU21937.1 hypothetical protein NGA_0235700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 282.7 bits (722), Expect = 3.000e-72
Identity = 150/269 (55.76%), Postives = 179/269 (66.54%), Query Frame = 0 
Query:  351 MSSDFLSDVVAHSSLFCDSPSASHLLIEALTYKSLSRLRQDRWICLVRNELRLEQRIPELKHNQEVGIKSTDSEQSILMHVYP-----KPVKSDVFTGTDVETCYSRLRDRVSLRRQMDFVSFSVDFPLQSCQAMNPTQAISSDVHECCGYLWTVQLVRLPDPATAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPCSPRDRMGLWLHLLPMKPLPTSPFPRSKPRGVASMVQIKVKTKAGYFNMLPDHCHTWTVFGGKEGKDNIK 615
            MSSDFLSDVVAHSSLF +SPSA+HLL+EAL YKSLSRLRQDRWI LVRNELR+E +  + K NQ+ GIK   SE    +          PVKS+ F GTDVE+C+SRL+DR ++  Q  F++F+VDF LQ+C  + P Q + S VHECCGYLWTVQLVRLP  + APP                                S  DRMGLWLHLLPMKP PTSPFP SKPRG+A+MVQ+++      F++LP   HTW +FGGKEGKDNIK
Sbjct:    1 MSSDFLSDVVAHSSLFAESPSATHLLVEALAYKSLSRLRQDRWIRLVRNELRIEHKAAQFKINQKAGIKPCPSEVQAAVREAESASSFNPVKSEPFRGTDVESCFSRLQDRTAV-LQSQFITFAVDFSLQACLQLQPNQGLFSAVHECCGYLWTVQLVRLPIASIAPPSNPQAIRPSPSTCFTP----------------SSSDRMGLWLHLLPMKPCPTSPFPHSKPRGLAAMVQLRINCA---FDVLPGANHTWILFGGKEGKDNIK 249
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BLAST of NO20G00150 vs. NCBI_GenBank
Match: EWM22225.1 (hypothetical protein Naga_100312g10, partial [Nannochloropsis gaditana])

HSP 1 Score: 114.0 bits (284), Expect = 1.800e-21
Identity = 114/197 (57.87%), Postives = 129/197 (65.48%), Query Frame = 0 
Query:    4 GGADDVR-----DDESVTNMSGNSTRYTRPLISKNQYYDQVAALDLNFALDNPIYADKEIHIVWEEDHPQWLALARE--------------ECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRREDLRPPLRKLKVVSASLAARSRFFKSMFELPFREKRAGRILYLAASSKEDAS 182
            GG D +R     DD S   +  +  R    L+SKN+YY+QVAALDLNFALDNP+YADKEIHIV  EDH  WL LAR                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                R DLRPPLRK+KVVSA+LA+RSRFFKS+FE PF E   G+++YL A  +E  S
Sbjct:    7 GGEDGLRAGRDNDDGSEIGLGASGRR----LMSKNEYYEQVAALDLNFALDNPLYADKEIHIVHAEDHWHWLKLARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETHSRRYKRRRLGLPHRGDLRPPLRKVKVVSATLASRSRFFKSLFEQPFSE-NGGQVIYLTAHDEEGGS 198
[Close]
BLAST of NO20G00150 vs. NCBI_GenBank
Match: XP_005854423.1 (hypothetical protein NGA_0235600, partial [Nannochloropsis gaditana CCMP526] >EKU21936.1 hypothetical protein NGA_0235600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 84.3 bits (207), Expect = 1.600e-12
Identity = 46/78 (58.97%), Postives = 53/78 (67.95%), Query Frame = 0 
Query:    4 GGADDVR-----DDESVTNMSGNSTRYTRPLISKNQYYDQVAALDLNFALDNPIYADKEIHIVWEEDHPQWLALAREE 77
            GG D +R     DD S   +  +  R    L+SKN+YY+QVAALDLNFALDNP+YADKEIHIV  EDH  WL LAR E
Sbjct:    7 GGEDGLRAGRDNDDGSEIGLGASGRR----LMSKNEYYEQVAALDLNFALDNPLYADKEIHIVHAEDHWHWLKLARRE 80
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BLAST of NO20G00150 vs. NCBI_GenBank
Match: XP_005854425.1 (hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526] >EKU21938.1 hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 70.1 bits (170), Expect = 3.000e-8
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 0 
Query:  246 AEASKSPALSLEELMYVYETLPVGVETNPLYETMIRKLDKLLVSYFP 293
            A+   + A++LEELMY+YE LPVG+ETNP YE+M +KLDKLLVS+FP
Sbjct:    4 ADDDSASAMTLEELMYIYEMLPVGIETNPQYESMTQKLDKLLVSFFP 50
The following BLAST results are available for this feature:
BLAST of NO20G00150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM22218.12.300e-7759.93hypothetical protein Naga_100555g1 [Nannochloropsi... [more]
XP_005854424.13.000e-7255.76hypothetical protein NGA_0235700, partial [Nannoch... [more]
EWM22225.11.800e-2157.87hypothetical protein Naga_100312g10, partial [Nann... [more]
XP_005854423.11.600e-1258.97hypothetical protein NGA_0235600, partial [Nannoch... [more]
XP_005854425.13.000e-865.96hypothetical protein NGA_0235800 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002539NSK002539Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00150.1NO20G00150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594213gene_6224Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100312g10gene8219Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00150.1NO20G00150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00150 ID=NO20G00150|Name=NO20G00150|organism=Nannochloropsis oceanica|type=gene|length=5476bp
ATGGATGGCGGAGGTGCTGATGACGTTCGGGATGACGAGTCTGTCACCAA
CATGAGCGGCAACTCgtacgtacataccactcggcctcgtcccttccccc
acttgccccctccttcgccacgccattcttacttcctcttctcccattct
tacttcctcttctccgagtccttcccgatcgctatgctctgtggcttcat
tgccttgaccttatgatcaaccggaccactggtccactcacatagccctc
cctcctttccttcccccccccccccgtttgcagGACCCGGTACACTCGCC
CTTTGATCAGCAAGAACCAGTACTATGACCAAGTCGCTGCTCTCGACCTC
AATTTTGCGCTCGACAATCCTATCTATGCGGATAAGGAGATACACgtacg
tcctctcattccttatttttcgctccttcggacgctcggtgcttgatgcg
gggcttatttttgggatggttaatagagattccagaagaaattggagagt
aaggggagaaagggagagagagccgttggcgaagcaagacgcatgctgag
ccttcccaggtcgagtattgtcacgagaaacatcatagctccaggaagga
ggcaccgacgttggatgttccttgataggatgagaattgacagaacagga
gatagacttcttcaagtggaagacatccgggtcgtctgagtgttcatgtt
gtttcctccgggaggatgaatgaatgatgtctaactttttctttacctac
tttcccccctccttccctcccttcctccctctctccctcatgtagATTGT
CTGGGAGGAGGACCACCCGCAGTGGCTGGCCTTGGCGCGAGAGGAGTGCG
AGGGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAAGAAAGAG
GAGGAGGAAGAAAAAGATGGCCTGCGGGAAGAGATTGGGAAAGGAAGGGG
CAAGCACTGGCGAGGGCGAGGAGGAGGAGGGCGACATCGGAAGAGGATTC
GGCGGGAGGATCTGCGACCGCCGTTACGGAAGCTCAAGgtaagggtggga
gggagggatggagggcgagcgagcgggagggaagaaataagaaaagtgtc
tacaaatattgtgacctcgatgtgaatatggcatggccctccctccctcc
ctccctcccttcctcagGTCGTCTCCGCCTCCCTAGCCGCGCGGTCCCGC
TTTTTTAAATCCATGTTTGAACTCCCGTTTCGTGAGAAACGTGCTGGGCG
CATACTTTATCTCGCGGCGAGTAGCAAAGAGGgtgagtgcgaggggaagg
gagagaggaagggagggagggagggagtgttgaagtcaagcagaatttga
gtcgaagagaggggtcggtgcacgtccacgcgcaacgtcgagccttcctc
tctcacttgcatccctattttatattccatgtacacatacacacacaccc
atgctccttgaaacgatggctgtctgtggctccagATGCCTCCATTGCGT
ACGCATGCATCTCGGGCCTCCATCAACGCGAGTTCCCCATCTACACCTCC
GACGTCGTCACGCTGgtacgcccccctccctccctccctccttccctccc
tccctccctcctccctccctccctctcatttccccttttcatcgacactg
ggatccggctttgacttacccccctcccctccccttccctctccctcctc
cctcctctccctcctccttcttttccttcttcccctccctcccctcccct
tccctctccctcctccctcctctccctcctccttctcttccttcctctcc
ttctcctccccccttccctccctccctcagGTCGACATGCTTGCCAAGGC
GCAGGAGTACATGGCCGAGGAGTCGGTCTCCGTCCTCGCTCGAGAGATCG
GAACGCGCGCTTGTCCAAGCCGGGCCCTGGACACGGCCTCAGGGCCAGgt
ggggaagggaaggaggaagggagggaaggagggagggaaggagggaggga
aggagggagggaggatgggagggagggagggaacacccgtggtagcgatt
acgaaaaacccggcagatttaaatctttaggctatgttttattacatcct
tcttgttctgaactcccttcctccctcattccctccttcctaccctcccc
ccttccctccctccctccctccctccctccctccctccctccctccctcc
ctccctcctcggtccagGTGCCGAGGCTTCCAAATCGCCCGCCCTGTCAC
TGGAGGAGTTGATGTATGTCTACGAGACACTGCCCGTGGGCGTGGAGgtg
agatgggagggagggagggagggagggaggaagagagtgaagagagagag
gaatttcccgtcatgagtgatatgctaagcgacttgtgcgtctccctccc
tccctccctccctccctccctccctccctcccttcagACCAACCCGCTGT
ACGAGACCATGATCCGCAAGCTTGACAAGCTCCTTGTCTCCTACTTCCCC
ACGgtatgtcctccctccctccctccctcctcctcctcctctcttttccc
ctcaccagccacccctccctccctccctccctccctccctcccttcctcc
ctcccttcctccctccctccctccttctttccctccctcctcctcctctc
tttccccctcaccaaccacccctccctccctccctccctccagCCGGACC
TGTACTGgtccatctcctcccccttcaaccagcccctctcctacaaaacc
atgcgcctcacctcgcaggaggaagaggcacagagcgctcagggcgcgcc
ggccgccattcgtcctccccctccccctcccaccccctccatacactctc
cgtccgcacgctcaagcacctccttgccagCCAGGGCATTCGGgtacctc
cctcccttcctcccttcctccctccctccctccctccctccctgcgtcaa
atgcctccttcgtgacgaggatcaagcctcgcacgacagacgaggcagaa
ctctcatctacccctccctccctccctccctccctccctccctccttagG
TCCGGCACGAGAACACCCTCTTCCTCCTCTTCCAGATTTATTTTGCTCAA
AGGCAGATCTGGACTGGCGACACTGAGGAAGAGAGGGAGAGGTCAAAAAG
GCAGGCTGTGGAGGAGgtgaggagggaggggagggcgggagggaagtaga
ggaggggcagaggagcaggtgagggagggcgggcgggagggagggaggga
aggaggacgggagggacggacggaaaacttagtcttcttacaatgcccct
tgcctcccttccccctccctccctccctccctcccgcccgccctccctca
gGTCCTCCCTTCCCTCCGCTTCCCCCGCATGTCGAGCGATTTCCTCTCGG
ATGTGGTGGCTCATTCTTCCCTCTTCTGCGACTCTCCCTCCGCCAGCCAC
CTCCTGATCGAAGCCCTCACATACAAGAGCCTCAGCCGCCTGCGTCAGgc
acgtcccactcaccccctccgatgtcctccctccctccttctccctccct
cctcatcaaaagaaactttcttccttcaggcttcagttccatacagcgat
tctcactctggtttccgccttcctccctccttccctccttccttccttca
ctcccttcctccctcccttcctccttttccaatcaacagGACCGCTGGAT
TTGTCTTGTCCGGAATGAACTCCGCCTAGAGCAACGCATCCCAGAGCTAA
AGgtacacctttccagtcctccctccttccctccctccctcccttccctc
ccttcttccctccctacctccctccctcgacccgtctccccccctccctc
cctcccaccttccctcactccctctcctccgccaccccctccctccctcc
ctccctccctccctcctccctttttagCACAACCAAGAGGTCGGGATCAA
ATCGACGGATTCCGAACAGAGTATTCTTATGCACGTCTACCCCAAGCCCG
TGAAATgtgagtcaatttgcccttcctccctctctccctctctttcttcc
ctccctccctccttccctccctccctccctcaagatcaacggctcatccc
agccttgaggctccaagaaggcaagaagcatcctcctgactccctccttt
ccccccctccttcctccctccctccttccctccccggcagCGGACGTCTT
CACCGGCACGGACGTGGAGACGTGCTATTCCCGCCTCCGAGATCGAGTGT
CATTGCGCCGGCAGATGGATTTCGTCTCCTTCTCCGTTGATTTCCCTCTG
CAGAGTTGCCAAGCTATGAATgtgcgtacactttcctccctccctccctc
cctgctcatgcattcatcattgaatttggggtaaatcattcactctctct
tcttccgtccctccctccctacctcctttcttccctccctcgtcatctca
cccaagccatcccatttgacctccacgaatgctgaccctctccctccctc
cctccctccagCCCACGCAGGCCATCTCCTCGGACGTGCACGAATGCTGC
GGTTACCTCTGGACGGTTCAACTCGTCCGTCTACCCGACCCGGCGACTGC
TCCGCCTCACCCTCCTCGCTCCCTTCCTCCCCCCAGACCTCCTGGCTCGA
ACACCGCCGACAGCACCATCTCTCCTCCCCCCCCTCCTCCCTCGCTCCCT
TGCAGCCCTCGGGATAGGATGGGGCTGTGGCTGCATCTGCTGCCAATGAA
GCCGCTTCCTACCTCTCCCTTCCCTCGATCTAAGCCCCGCGGGGTGGCCT
CGATGGTACAGATCAAGgtaggagagggaatgggagggagggagggaagg
gctggtggacgggtgcatgcgataagtaatagggaagaaaacgtgtccag
cccctacttccctctctttgaaatgatatgtgctggagacagcagtggtt
catggctcgtgctcaccccatctcctccctccctccctccctccctcccc
ctttccccacctctcctccgtagGTCAAGACAAAGGCCGGCTACTTCAAC
ATGCTGCCAGACCACTGCCACACCTGGACCGTCTTCGGCGGCAAGGAAGg
tgggcagtggagggaggaaagaaggaaggaaaagtgggtagggcggagga
ggagaaaggacgcttccaaaagtagaaagaaagaaagaattgaatgtctc
tcttctctccctccctccctccctccctccctccctccctccctccctcc
ctcagGTAAGGACAACATCAAATTTCCGTATTTCCACCCTGAGAATTCGC
CTCCTCTCTCGGAGGCCGACCTCTTCCGGCGGGAAAGGGAGGGAGTGAGG
GAGTGGTCGCAAATCGTGAGTGCCGATGGGGGGCTCTTCCTGGCCAAGCC
GGAGGAGGGACAGGGCCACCAGGGGATGAGAGCCAGGTGTATGACGGTTA
AGATCTGTGTGCGTACGGAAGATTAG
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protein sequence of NO20G00150.1

>NO20G00150.1-protein ID=NO20G00150.1-protein|Name=NO20G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=682bp
MDGGGADDVRDDESVTNMSGNSTRYTRPLISKNQYYDQVAALDLNFALDN
PIYADKEIHIVWEEDHPQWLALAREECEGEEEEEEEEEEEEKKEEEEEKD
GLREEIGKGRGKHWRGRGGGGRHRKRIRREDLRPPLRKLKVVSASLAARS
RFFKSMFELPFREKRAGRILYLAASSKEDASIAYACISGLHQREFPIYTS
DVVTLVDMLAKAQEYMAEESVSVLAREIGTRACPSRALDTASGPGAEASK
SPALSLEELMYVYETLPVGVETNPLYETMIRKLDKLLVSYFPTPDLYCQG
IRVRHENTLFLLFQIYFAQRQIWTGDTEEERERSKRQAVEEVLPSLRFPR
MSSDFLSDVVAHSSLFCDSPSASHLLIEALTYKSLSRLRQDRWICLVRNE
LRLEQRIPELKHNQEVGIKSTDSEQSILMHVYPKPVKSDVFTGTDVETCY
SRLRDRVSLRRQMDFVSFSVDFPLQSCQAMNPTQAISSDVHECCGYLWTV
QLVRLPDPATAPPHPPRSLPPPRPPGSNTADSTISPPPPPPSLPCSPRDR
MGLWLHLLPMKPLPTSPFPRSKPRGVASMVQIKVKTKAGYFNMLPDHCHT
WTVFGGKEGKDNIKFPYFHPENSPPLSEADLFRREREGVREWSQIVSADG
GLFLAKPEEGQGHQGMRARCMTVKICVRTED*
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Synonyms
Publications