NO20G00090, NO20G00090 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO20G00090 vs. NCBI_GenBank
Match: EWM22226.1 (hypothetical protein Naga_100312g1 [Nannochloropsis gaditana]) HSP 1 Score: 109.0 bits (271), Expect = 2.900e-20 Identity = 62/140 (44.29%), Postives = 82/140 (58.57%), Query Frame = 0 Query: 23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETG---------TGEV--RTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVR 152 R SC RCRRP RVCLC L P LPPH+S+++LQH AE +SNPV TV IL+AV E G+ + L E G +GE+ R + GGL V+ C + D R+ RA ++G+++LYPAEGA+D R Sbjct: 29 RQSCKRCRRPLRVCLCSSLPPRLFALPPHVSLLVLQHTAEARSNPVTCTVPILQAVIE---GERQGLREAGYSNRGGKASSGELWRRERESVSPESGGGLCVVECSSKGVDGLKDRRVVRALRDKGSLVLYPAEGAKDSR 165
BLAST of NO20G00090 vs. NCBI_GenBank
Match: EWM22230.1 (hypothetical protein Naga_100724g1 [Nannochloropsis gaditana]) HSP 1 Score: 97.1 bits (240), Expect = 1.100e-16 Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 0 Query: 252 PPIFTVRKEPPKVLGKGGRSTAEAVALVLFLLGEKQLAEAIIEAVRRANGMQLSLTDPAKVRHRRERKGYIENLYS 328 PP+FTVRK P ++ KG RSTAEAVAL L LG + +A+A++ V+ AN MQLSL DPA VRHRRER+GY+ENLY+ Sbjct: 2 PPVFTVRKGPADLVRKGARSTAEAVALALRWLGGEDVAQAVLRGVQAANVMQLSLMDPATVRHRREREGYVENLYT 77
BLAST of NO20G00090 vs. NCBI_GenBank
Match: XP_003473330.1 (DTW domain-containing protein 2 isoform X1 [Cavia porcellus]) HSP 1 Score: 72.0 bits (175), Expect = 4.000e-9 Identity = 56/181 (30.94%), Postives = 80/181 (44.20%), Query Frame = 0 Query: 23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVRQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYTRNT 204 RP C RCRRP +VCLCPFL L + HL II QH AE N V TV +LEA Q+K V+ G R+ +E E D L+ + GT++LYP A D+ + + D + +T+I++DGTW A+ ++ +N+ Sbjct: 66 RPECGRCRRPQKVCLCPFLPLHPLHIATHLYII--QHPAE--ENKVLRTVPLLEACLP----QDKCKVKIG-------RRFSE------------------EKDTELSAICRKSGTLILYPGAEAADLEEFISDSP---------------------VYPSTIIIIDGTWSQAKDIFYKNS 192
BLAST of NO20G00090 vs. NCBI_GenBank
Match: XP_013011679.1 (DTW domain-containing protein 2 isoform X2 [Cavia porcellus]) HSP 1 Score: 71.6 bits (174), Expect = 5.200e-9 Identity = 63/201 (31.34%), Postives = 89/201 (44.28%), Query Frame = 0 Query: 23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVRQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYTRNTCLHGLP--TVCLPLPSSLPF 222 RP C RCRRP +VCLCPFL L + HL II QH AE N V TV +LEA Q+K V+ G R+ +E E D L+ + GT++LYP A D+ + + D + +T+I++DGTW A+ ++ +N+ L LP T+ PL + F Sbjct: 66 RPECGRCRRPQKVCLCPFLPLHPLHIATHLYII--QHPAE--ENKVLRTVPLLEACLP----QDKCKVKIG-------RRFSE------------------EKDTELSAICRKSGTLILYPGAEAADLEEFISDSP---------------------VYPSTIIIIDGTWSQAKDIFYKNS-LFRLPKQTLLRPLQALCSF 211
BLAST of NO20G00090 vs. NCBI_GenBank
Match: XP_007947355.1 (PREDICTED: DTW domain-containing protein 2 [Orycteropus afer afer]) HSP 1 Score: 70.5 bits (171), Expect = 1.200e-8 Identity = 55/181 (30.39%), Postives = 82/181 (45.30%), Query Frame = 0 Query: 23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVRQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYTRNT 204 RP C+RCRRP +VCLCPFL L + HL II QH AE N V TV +L A QEK V+ G R+ +E E D L+ ++ GT++LYP A ++ + ++D + +T+I++DGTW A+ ++ +N+ Sbjct: 66 RPECSRCRRPLKVCLCPFLPVHPLHISTHLYII--QHPAE--ENKVLRTVPLLAACLP----QEKCKVKIG-------RRFSE------------------ERDPELSAVCQKAGTLILYPGAEAANLEEFILDSP---------------------VYPSTIIIIDGTWSQAKDIFYKNS 192
BLAST of NO20G00090 vs. NCBI_GenBank
Match: XP_004420341.1 (PREDICTED: DTW domain-containing protein 2 [Ceratotherium simum simum]) HSP 1 Score: 68.9 bits (167), Expect = 3.400e-8 Identity = 57/188 (30.32%), Postives = 84/188 (44.68%), Query Frame = 0 Query: 23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVRQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYTRNTCLHGLPT 211 RP C+RC RP +VCLCPFL L + HL II QH AE N V TV +L A Q+K V+ G R+ +E E D L+ + GT++LYP A ++ + ++D + +T+I++DGTW A+ ++ +N+ L LPT Sbjct: 64 RPECSRCSRPQKVCLCPFLPVHPLHISTHLYII--QHPAE--ENKVLRTVPLLAACLP----QDKCKVKIG-------RRFSE------------------ERDPELSTVCRKSGTLILYPGAEAANLEEFILDSP---------------------IYPSTIIIIDGTWSQAKDIFYKNS-LFRLPT 196
BLAST of NO20G00090 vs. NCBI_GenBank
Match: XP_013362437.1 (PREDICTED: DTW domain-containing protein 2 [Chinchilla lanigera]) HSP 1 Score: 68.9 bits (167), Expect = 3.400e-8 Identity = 53/180 (29.44%), Postives = 78/180 (43.33%), Query Frame = 0 Query: 23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVRQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYTRN 203 RP C RC RP +VCLCPFL L + HL II QH AE N V TV +LEA Q+K V+ G R+ +E E D L+ + GT++ YP A ++ + ++D + +T+I++DGTW A+ ++ +N Sbjct: 66 RPECGRCSRPQKVCLCPFLPAHPLHISTHLYII--QHPAE--ENKVLRTVPLLEACLP----QDKCKVKIG-------RRFSE------------------ERDTELSTVCRKSGTLIFYPGAEAANLEEFILD---------------------SAVYPSTIIIIDGTWSQAKDIFYKN 191
BLAST of NO20G00090 vs. NCBI_GenBank
Match: XP_002744721.1 (PREDICTED: DTW domain-containing protein 2 isoform X2 [Callithrix jacchus]) HSP 1 Score: 68.6 bits (166), Expect = 4.400e-8 Identity = 53/181 (29.28%), Postives = 81/181 (44.75%), Query Frame = 0 Query: 23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVRQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYTRNT 204 RP C+RC RP +VCLCPFL L + HL II QH AE N V TV +L A Q+K V+ G R+ +E E D L+ ++ GT++LYP A ++ + ++D + +T+I++DGTW A+ ++ +N+ Sbjct: 66 RPECSRCSRPQKVCLCPFLPAHPLPISTHLYII--QHPAE--ENKVLRTVPLLAACLP----QDKCKVKIG-------RRFSE------------------ERDPELSTICQKSGTLILYPGAEAANLEEFILDSP---------------------VYPSTIIIIDGTWSQAKDIFYKNS 192
BLAST of NO20G00090 vs. NCBI_GenBank
Match: XP_008012396.1 (PREDICTED: DTW domain-containing protein 2 [Chlorocebus sabaeus]) HSP 1 Score: 68.6 bits (166), Expect = 4.400e-8 Identity = 53/181 (29.28%), Postives = 81/181 (44.75%), Query Frame = 0 Query: 23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVRQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYTRNT 204 RP C+RC RP +VCLCPFL L + HL II QH AE N V TV +L A Q+K V+ G R+ +E E D+ L+ + GT++LYP A ++ + ++D + +T+I++DGTW A+ ++ +N+ Sbjct: 66 RPECSRCSRPQKVCLCPFLPAHPLHISTHLYII--QHPAE--ENKVLRTVPLLAACLP----QDKCKVKIG-------RRFSE------------------ERDSELSTVCRKSGTLILYPGAEAANLEEFILDSP---------------------VYPSTIIIIDGTWSQAKDIFYKNS 192
BLAST of NO20G00090 vs. NCBI_GenBank
Match: XP_008989889.1 (PREDICTED: DTW domain-containing protein 2 isoform X1 [Callithrix jacchus]) HSP 1 Score: 68.6 bits (166), Expect = 4.400e-8 Identity = 53/181 (29.28%), Postives = 81/181 (44.75%), Query Frame = 0 Query: 23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVRQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYTRNT 204 RP C+RC RP +VCLCPFL L + HL II QH AE N V TV +L A Q+K V+ G R+ +E E D L+ ++ GT++LYP A ++ + ++D + +T+I++DGTW A+ ++ +N+ Sbjct: 66 RPECSRCSRPQKVCLCPFLPAHPLPISTHLYII--QHPAE--ENKVLRTVPLLAACLP----QDKCKVKIG-------RRFSE------------------ERDPELSTICQKSGTLILYPGAEAANLEEFILDSP---------------------VYPSTIIIIDGTWSQAKDIFYKNS 192 The following BLAST results are available for this feature:
BLAST of NO20G00090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G00090 ID=NO20G00090|Name=NO20G00090|organism=Nannochloropsis oceanica|type=gene|length=1688bpback to top protein sequence of NO20G00090.1 >NO20G00090.1-protein ID=NO20G00090.1-protein|Name=NO20G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bpback to top Synonyms
Publications
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