NO20G00090, NO20G00090 (gene) Nannochloropsis oceanica

Overview
NameNO20G00090
Unique NameNO20G00090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1688
Alignment locationchr20:31646..33333 -

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Properties
Property NameValue
DescriptionDTW domain-containing protein 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:31646..33333 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005636DTW
Homology
BLAST of NO20G00090 vs. NCBI_GenBank
Match: EWM22226.1 (hypothetical protein Naga_100312g1 [Nannochloropsis gaditana])

HSP 1 Score: 109.0 bits (271), Expect = 2.900e-20
Identity = 62/140 (44.29%), Postives = 82/140 (58.57%), Query Frame = 0
Query:   23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETG---------TGEV--RTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVR 152
            R SC RCRRP RVCLC  L P    LPPH+S+++LQH AE +SNPV  TV IL+AV E   G+ + L E G         +GE+  R     +    GGL V+ C    +    D R+ RA  ++G+++LYPAEGA+D R
Sbjct:   29 RQSCKRCRRPLRVCLCSSLPPRLFALPPHVSLLVLQHTAEARSNPVTCTVPILQAVIE---GERQGLREAGYSNRGGKASSGELWRRERESVSPESGGGLCVVECSSKGVDGLKDRRVVRALRDKGSLVLYPAEGAKDSR 165          
BLAST of NO20G00090 vs. NCBI_GenBank
Match: EWM22230.1 (hypothetical protein Naga_100724g1 [Nannochloropsis gaditana])

HSP 1 Score: 97.1 bits (240), Expect = 1.100e-16
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 0
Query:  252 PPIFTVRKEPPKVLGKGGRSTAEAVALVLFLLGEKQLAEAIIEAVRRANGMQLSLTDPAKVRHRRERKGYIENLYS 328
            PP+FTVRK P  ++ KG RSTAEAVAL L  LG + +A+A++  V+ AN MQLSL DPA VRHRRER+GY+ENLY+
Sbjct:    2 PPVFTVRKGPADLVRKGARSTAEAVALALRWLGGEDVAQAVLRGVQAANVMQLSLMDPATVRHRREREGYVENLYT 77          
BLAST of NO20G00090 vs. NCBI_GenBank
Match: XP_003473330.1 (DTW domain-containing protein 2 isoform X1 [Cavia porcellus])

HSP 1 Score: 72.0 bits (175), Expect = 4.000e-9
Identity = 56/181 (30.94%), Postives = 80/181 (44.20%), Query Frame = 0
Query:   23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVRQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYTRNT 204
            RP C RCRRP +VCLCPFL    L +  HL II  QH AE   N V  TV +LEA       Q+K  V+ G       R+ +E                  E D  L+    + GT++LYP   A D+ + + D                        + +T+I++DGTW  A+ ++ +N+
Sbjct:   66 RPECGRCRRPQKVCLCPFLPLHPLHIATHLYII--QHPAE--ENKVLRTVPLLEACLP----QDKCKVKIG-------RRFSE------------------EKDTELSAICRKSGTLILYPGAEAADLEEFISDSP---------------------VYPSTIIIIDGTWSQAKDIFYKNS 192          
BLAST of NO20G00090 vs. NCBI_GenBank
Match: XP_013011679.1 (DTW domain-containing protein 2 isoform X2 [Cavia porcellus])

HSP 1 Score: 71.6 bits (174), Expect = 5.200e-9
Identity = 63/201 (31.34%), Postives = 89/201 (44.28%), Query Frame = 0
Query:   23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVRQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYTRNTCLHGLP--TVCLPLPSSLPF 222
            RP C RCRRP +VCLCPFL    L +  HL II  QH AE   N V  TV +LEA       Q+K  V+ G       R+ +E                  E D  L+    + GT++LYP   A D+ + + D                        + +T+I++DGTW  A+ ++ +N+ L  LP  T+  PL +   F
Sbjct:   66 RPECGRCRRPQKVCLCPFLPLHPLHIATHLYII--QHPAE--ENKVLRTVPLLEACLP----QDKCKVKIG-------RRFSE------------------EKDTELSAICRKSGTLILYPGAEAADLEEFISDSP---------------------VYPSTIIIIDGTWSQAKDIFYKNS-LFRLPKQTLLRPLQALCSF 211          
BLAST of NO20G00090 vs. NCBI_GenBank
Match: XP_007947355.1 (PREDICTED: DTW domain-containing protein 2 [Orycteropus afer afer])

HSP 1 Score: 70.5 bits (171), Expect = 1.200e-8
Identity = 55/181 (30.39%), Postives = 82/181 (45.30%), Query Frame = 0
Query:   23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVRQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYTRNT 204
            RP C+RCRRP +VCLCPFL    L +  HL II  QH AE   N V  TV +L A       QEK  V+ G       R+ +E                  E D  L+   ++ GT++LYP   A ++ + ++D                        + +T+I++DGTW  A+ ++ +N+
Sbjct:   66 RPECSRCRRPLKVCLCPFLPVHPLHISTHLYII--QHPAE--ENKVLRTVPLLAACLP----QEKCKVKIG-------RRFSE------------------ERDPELSAVCQKAGTLILYPGAEAANLEEFILDSP---------------------VYPSTIIIIDGTWSQAKDIFYKNS 192          
BLAST of NO20G00090 vs. NCBI_GenBank
Match: XP_004420341.1 (PREDICTED: DTW domain-containing protein 2 [Ceratotherium simum simum])

HSP 1 Score: 68.9 bits (167), Expect = 3.400e-8
Identity = 57/188 (30.32%), Postives = 84/188 (44.68%), Query Frame = 0
Query:   23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVRQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYTRNTCLHGLPT 211
            RP C+RC RP +VCLCPFL    L +  HL II  QH AE   N V  TV +L A       Q+K  V+ G       R+ +E                  E D  L+    + GT++LYP   A ++ + ++D                        + +T+I++DGTW  A+ ++ +N+ L  LPT
Sbjct:   64 RPECSRCSRPQKVCLCPFLPVHPLHISTHLYII--QHPAE--ENKVLRTVPLLAACLP----QDKCKVKIG-------RRFSE------------------ERDPELSTVCRKSGTLILYPGAEAANLEEFILDSP---------------------IYPSTIIIIDGTWSQAKDIFYKNS-LFRLPT 196          
BLAST of NO20G00090 vs. NCBI_GenBank
Match: XP_013362437.1 (PREDICTED: DTW domain-containing protein 2 [Chinchilla lanigera])

HSP 1 Score: 68.9 bits (167), Expect = 3.400e-8
Identity = 53/180 (29.44%), Postives = 78/180 (43.33%), Query Frame = 0
Query:   23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVRQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYTRN 203
            RP C RC RP +VCLCPFL    L +  HL II  QH AE   N V  TV +LEA       Q+K  V+ G       R+ +E                  E D  L+    + GT++ YP   A ++ + ++D                        + +T+I++DGTW  A+ ++ +N
Sbjct:   66 RPECGRCSRPQKVCLCPFLPAHPLHISTHLYII--QHPAE--ENKVLRTVPLLEACLP----QDKCKVKIG-------RRFSE------------------ERDTELSTVCRKSGTLIFYPGAEAANLEEFILD---------------------SAVYPSTIIIIDGTWSQAKDIFYKN 191          
BLAST of NO20G00090 vs. NCBI_GenBank
Match: XP_002744721.1 (PREDICTED: DTW domain-containing protein 2 isoform X2 [Callithrix jacchus])

HSP 1 Score: 68.6 bits (166), Expect = 4.400e-8
Identity = 53/181 (29.28%), Postives = 81/181 (44.75%), Query Frame = 0
Query:   23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVRQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYTRNT 204
            RP C+RC RP +VCLCPFL    L +  HL II  QH AE   N V  TV +L A       Q+K  V+ G       R+ +E                  E D  L+   ++ GT++LYP   A ++ + ++D                        + +T+I++DGTW  A+ ++ +N+
Sbjct:   66 RPECSRCSRPQKVCLCPFLPAHPLPISTHLYII--QHPAE--ENKVLRTVPLLAACLP----QDKCKVKIG-------RRFSE------------------ERDPELSTICQKSGTLILYPGAEAANLEEFILDSP---------------------VYPSTIIIIDGTWSQAKDIFYKNS 192          
BLAST of NO20G00090 vs. NCBI_GenBank
Match: XP_008012396.1 (PREDICTED: DTW domain-containing protein 2 [Chlorocebus sabaeus])

HSP 1 Score: 68.6 bits (166), Expect = 4.400e-8
Identity = 53/181 (29.28%), Postives = 81/181 (44.75%), Query Frame = 0
Query:   23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVRQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYTRNT 204
            RP C+RC RP +VCLCPFL    L +  HL II  QH AE   N V  TV +L A       Q+K  V+ G       R+ +E                  E D+ L+    + GT++LYP   A ++ + ++D                        + +T+I++DGTW  A+ ++ +N+
Sbjct:   66 RPECSRCSRPQKVCLCPFLPAHPLHISTHLYII--QHPAE--ENKVLRTVPLLAACLP----QDKCKVKIG-------RRFSE------------------ERDSELSTVCRKSGTLILYPGAEAANLEEFILDSP---------------------VYPSTIIIIDGTWSQAKDIFYKNS 192          
BLAST of NO20G00090 vs. NCBI_GenBank
Match: XP_008989889.1 (PREDICTED: DTW domain-containing protein 2 isoform X1 [Callithrix jacchus])

HSP 1 Score: 68.6 bits (166), Expect = 4.400e-8
Identity = 53/181 (29.28%), Postives = 81/181 (44.75%), Query Frame = 0
Query:   23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVRQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYTRNT 204
            RP C+RC RP +VCLCPFL    L +  HL II  QH AE   N V  TV +L A       Q+K  V+ G       R+ +E                  E D  L+   ++ GT++LYP   A ++ + ++D                        + +T+I++DGTW  A+ ++ +N+
Sbjct:   66 RPECSRCSRPQKVCLCPFLPAHPLPISTHLYII--QHPAE--ENKVLRTVPLLAACLP----QDKCKVKIG-------RRFSE------------------ERDPELSTICQKSGTLILYPGAEAANLEEFILDSP---------------------VYPSTIIIIDGTWSQAKDIFYKNS 192          
The following BLAST results are available for this feature:
BLAST of NO20G00090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22226.12.900e-2044.29hypothetical protein Naga_100312g1 [Nannochloropsi... [more]
EWM22230.11.100e-1663.16hypothetical protein Naga_100724g1 [Nannochloropsi... [more]
XP_003473330.14.000e-930.94DTW domain-containing protein 2 isoform X1 [Cavia ... [more]
XP_013011679.15.200e-931.34DTW domain-containing protein 2 isoform X2 [Cavia ... [more]
XP_007947355.11.200e-830.39PREDICTED: DTW domain-containing protein 2 [Orycte... [more]
XP_004420341.13.400e-830.32PREDICTED: DTW domain-containing protein 2 [Cerato... [more]
XP_013362437.13.400e-829.44PREDICTED: DTW domain-containing protein 2 [Chinch... [more]
XP_002744721.14.400e-829.28PREDICTED: DTW domain-containing protein 2 isoform... [more]
XP_008012396.14.400e-829.28PREDICTED: DTW domain-containing protein 2 [Chloro... [more]
XP_008989889.14.400e-829.28PREDICTED: DTW domain-containing protein 2 isoform... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002532NSK002532Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00090.1NO20G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594175gene_6217Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100724g1gene8212Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00090.1NO20G00090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00090 ID=NO20G00090|Name=NO20G00090|organism=Nannochloropsis oceanica|type=gene|length=1688bp
AAACGCACAGCGCCAGAGGAAGATCGAATGCATAAGTGGTAGAGGCCAGG
CAGTGGCGTGGAGGCTGGCTGGGAAAGACGACGCAGCACAGACTCACAAA
AGTGACAGTTGTGGGCGGCAATGCTGGAATGTCCGAGGAGGAAGACGCAC
AAGCGCTAATCGACCCTTCCATCACCGGCAATGCCAGTACCTATCGCCCT
TCCTGTGCGgtaagcaaatttttctcccttcccatttctgcaccccgccc
tgtgcatccctatttccatcccatttgacctcctccctcccgccctctcc
atactccaaccctccttgccagCGCTGCCGCCGCCCTCCGCGTGTCTGCC
TCTGCCCCTTTCTTTCTCCAGCGCGTCTAACCTTGCCTCCCCACCTCTCA
ATTATCATCCTTCAACACGCGGCGGAAGGGAAGAGCAACCCGGTCAAAGC
TACCGTGTCAATTCTCGAGGCGGTGTTTGAATCTCAGGGAGGGCAGGAGA
AAGAGCTAGTAGAGACAGGCACTGGAGAAGTGAGAACTTTGAGAAAGACG
AACGAAGCACGCAATGGAGGGTTGATCGTCATATCATGCCCAAAAGGCAT
GTTAAAAAGAGAAATGGATGCACGGCTGGCCCGCGCTTTTGAGGAGGAGG
GGACTGTGTTGCTGTACCCGGCGGAGGGAGCGAGAGACGTGAGACAGCTG
CTGGTAGATCGGAAGAAAGGAAGGAAAGAAGACGGAGACGAAGGGGGAGG
GGTAAAGGGAGGAGGTCGAGAAGGTTGTGAATGGAAAAATACGTTGATTG
TCCTGGATGGCACGTGGGAGTCAGCGCGGAGGATGTATACTCGCAACACA
TGTCTCCACGGCCTGCCGACCGTGTGCCTCCCCCTCCCTTCTTCCCTCCC
TTTCCCCGTTCCATCCCCTACCCTGTCCTCCTCATCCACGCCACGAGCCA
GCGGGACGGACGGTATCGACGAACAATTAATTTGGCTCGCACGTCCGCCC
ATTTTCACTGTCCGCAAGGAGCCCCCAAAGGTCCTGGGAAAGGGAGGGAG
GAGCACAGCAGAGGCAGTGGCCTTGGTACTCTTCTTACTCGGGGAAAAAC
AGCTTGCAGAGGCTATCATTGAAGCCGTGCGAAGGGCGAACGGGATGCAG
CTTTCATTGACTGACCCTGCCAAAGTCCGGCACCGGCGAGAGCGGAAGGG
CTACATAGAAAACCTGTACAGTGCGAGCCACGAACAAGCCTTTTTTCACA
TGCGCTGAAGTGGAAAACATGATACAATAACTGAGACGATCGCTGACCAA
GTTCGCTCATCCGAGAGTAATTTCCAACCGCGTTGTCCTCACTATTCTCT
TCCTTTGTCGTTCGTGCTCTCAGGAGTCGGCGGGAGCCCAAGCAATGATC
CCACGGTTTCTAATACCTGCCACCTGTGCCTGTCCCCCACCACGCGCACA
TGTTTCTTTTTCTAAACGGAACATTGTGTGGATGGACTGGAGGGTGAATG
AAGCCTCGTCATTTGAGCTCAATGTTTGCGGCACCTCTTAAGAGTTACAG
TTGTTGCCGCGCGTCGGATCCTCGAGGGTGCCGTTGAACAATAGGGGAGG
GCAAAGTGAGCGACGAGAAAGGAGCAAAACGAGAACGATGGCCAGTCCGA
CATGCTTAAAGATAGAGCTCTTGGTCACAGAGCGCCGT
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protein sequence of NO20G00090.1

>NO20G00090.1-protein ID=NO20G00090.1-protein|Name=NO20G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MSEEEDAQALIDPSITGNASTYRPSCARCRRPPRVCLCPFLSPARLTLPP
HLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTL
RKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDV
RQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYT
RNTCLHGLPTVCLPLPSSLPFPVPSPTLSSSSTPRASGTDGIDEQLIWLA
RPPIFTVRKEPPKVLGKGGRSTAEAVALVLFLLGEKQLAEAIIEAVRRAN
GMQLSLTDPAKVRHRRERKGYIENLYSASHEQAFFHMR*
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Synonyms
Publications