NO20G00090.1, NO20G00090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00090.1
Unique NameNO20G00090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1575
Alignment locationchr20:31646..33333 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:31646..33333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G00090.1 vs.
Match: EWM22226.1 (hypothetical protein Naga_100312g1 [Nannochloropsis gaditana])

HSP 1 Score: 109.0 bits (271), Expect = 2.900e-20
Identity = 62/140 (44.29%), Postives = 82/140 (58.57%), Query Frame = 0 
Query:   23 RPSCARCRRPPRVCLCPFLSPARLTLPPHLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETG---------TGEV--RTLRKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDVR 152
            R SC RCRRP RVCLC  L P    LPPH+S+++LQH AE +SNPV  TV IL+AV E   G+ + L E G         +GE+  R     +    GGL V+ C    +    D R+ RA  ++G+++LYPAEGA+D R
Sbjct:   29 RQSCKRCRRPLRVCLCSSLPPRLFALPPHVSLLVLQHTAEARSNPVTCTVPILQAVIE---GERQGLREAGYSNRGGKASSGELWRRERESVSPESGGGLCVVECSSKGVDGLKDRRVVRALRDKGSLVLYPAEGAKDSR 165
The following BLAST results are available for this feature:
BLAST of NO20G00090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22226.12.900e-2044.29hypothetical protein Naga_100312g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00090NO20G00090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00090.1NO20G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00090.1.cds1NO20G00090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00090.1.cds2NO20G00090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00090.1 ID=NO20G00090.1|Name=NO20G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp
AAACGCACAGCGCCAGAGGAAGATCGAATGCATAAGTGGTAGAGGCCAGG
CAGTGGCGTGGAGGCTGGCTGGGAAAGACGACGCAGCACAGACTCACAAA
AGTGACAGTTGTGGGCGGCAATGCTGGAATGTCCGAGGAGGAAGACGCAC
AAGCGCTAATCGACCCTTCCATCACCGGCAATGCCAGTACCTATCGCCCT
TCCTGTGCGCGCTGCCGCCGCCCTCCGCGTGTCTGCCTCTGCCCCTTTCT
TTCTCCAGCGCGTCTAACCTTGCCTCCCCACCTCTCAATTATCATCCTTC
AACACGCGGCGGAAGGGAAGAGCAACCCGGTCAAAGCTACCGTGTCAATT
CTCGAGGCGGTGTTTGAATCTCAGGGAGGGCAGGAGAAAGAGCTAGTAGA
GACAGGCACTGGAGAAGTGAGAACTTTGAGAAAGACGAACGAAGCACGCA
ATGGAGGGTTGATCGTCATATCATGCCCAAAAGGCATGTTAAAAAGAGAA
ATGGATGCACGGCTGGCCCGCGCTTTTGAGGAGGAGGGGACTGTGTTGCT
GTACCCGGCGGAGGGAGCGAGAGACGTGAGACAGCTGCTGGTAGATCGGA
AGAAAGGAAGGAAAGAAGACGGAGACGAAGGGGGAGGGGTAAAGGGAGGA
GGTCGAGAAGGTTGTGAATGGAAAAATACGTTGATTGTCCTGGATGGCAC
GTGGGAGTCAGCGCGGAGGATGTATACTCGCAACACATGTCTCCACGGCC
TGCCGACCGTGTGCCTCCCCCTCCCTTCTTCCCTCCCTTTCCCCGTTCCA
TCCCCTACCCTGTCCTCCTCATCCACGCCACGAGCCAGCGGGACGGACGG
TATCGACGAACAATTAATTTGGCTCGCACGTCCGCCCATTTTCACTGTCC
GCAAGGAGCCCCCAAAGGTCCTGGGAAAGGGAGGGAGGAGCACAGCAGAG
GCAGTGGCCTTGGTACTCTTCTTACTCGGGGAAAAACAGCTTGCAGAGGC
TATCATTGAAGCCGTGCGAAGGGCGAACGGGATGCAGCTTTCATTGACTG
ACCCTGCCAAAGTCCGGCACCGGCGAGAGCGGAAGGGCTACATAGAAAAC
CTGTACAGTGCGAGCCACGAACAAGCCTTTTTTCACATGCGCTGAAGTGG
AAAACATGATACAATAACTGAGACGATCGCTGACCAAGTTCGCTCATCCG
AGAGTAATTTCCAACCGCGTTGTCCTCACTATTCTCTTCCTTTGTCGTTC
GTGCTCTCAGGAGTCGGCGGGAGCCCAAGCAATGATCCCACGGTTTCTAA
TACCTGCCACCTGTGCCTGTCCCCCACCACGCGCACATGTTTCTTTTTCT
AAACGGAACATTGTGTGGATGGACTGGAGGGTGAATGAAGCCTCGTCATT
TGAGCTCAATGTTTGCGGCACCTCTTAAGAGTTACAGTTGTTGCCGCGCG
TCGGATCCTCGAGGGTGCCGTTGAACAATAGGGGAGGGCAAAGTGAGCGA
CGAGAAAGGAGCAAAACGAGAACGATGGCCAGTCCGACATGCTTAAAGAT
AGAGCTCTTGGTCACAGAGCGCCGT
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protein sequence of NO20G00090.1

>NO20G00090.1-protein ID=NO20G00090.1-protein|Name=NO20G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MSEEEDAQALIDPSITGNASTYRPSCARCRRPPRVCLCPFLSPARLTLPP
HLSIIILQHAAEGKSNPVKATVSILEAVFESQGGQEKELVETGTGEVRTL
RKTNEARNGGLIVISCPKGMLKREMDARLARAFEEEGTVLLYPAEGARDV
RQLLVDRKKGRKEDGDEGGGVKGGGREGCEWKNTLIVLDGTWESARRMYT
RNTCLHGLPTVCLPLPSSLPFPVPSPTLSSSSTPRASGTDGIDEQLIWLA
RPPIFTVRKEPPKVLGKGGRSTAEAVALVLFLLGEKQLAEAIIEAVRRAN
GMQLSLTDPAKVRHRRERKGYIENLYSASHEQAFFHMR*
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mRNA from alignment at chr20:31646..33333-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00090.1 ID=NO20G00090.1|Name=NO20G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1688bp|location=Sequence derived from alignment at chr20:31646..33333- (Nannochloropsis oceanica)
AAACGCACAGCGCCAGAGGAAGATCGAATGCATAAGTGGTAGAGGCCAGG
CAGTGGCGTGGAGGCTGGCTGGGAAAGACGACGCAGCACAGACTCACAAA
AGTGACAGTTGTGGGCGGCAATGCTGGAATGTCCGAGGAGGAAGACGCAC
AAGCGCTAATCGACCCTTCCATCACCGGCAATGCCAGTACCTATCGCCCT
TCCTGTGCGGTAAGCAAATTTTTCTCCCTTCCCATTTCTGCACCCCGCCC
TGTGCATCCCTATTTCCATCCCATTTGACCTCCTCCCTCCCGCCCTCTCC
ATACTCCAACCCTCCTTGCCAGCGCTGCCGCCGCCCTCCGCGTGTCTGCC
TCTGCCCCTTTCTTTCTCCAGCGCGTCTAACCTTGCCTCCCCACCTCTCA
ATTATCATCCTTCAACACGCGGCGGAAGGGAAGAGCAACCCGGTCAAAGC
TACCGTGTCAATTCTCGAGGCGGTGTTTGAATCTCAGGGAGGGCAGGAGA
AAGAGCTAGTAGAGACAGGCACTGGAGAAGTGAGAACTTTGAGAAAGACG
AACGAAGCACGCAATGGAGGGTTGATCGTCATATCATGCCCAAAAGGCAT
GTTAAAAAGAGAAATGGATGCACGGCTGGCCCGCGCTTTTGAGGAGGAGG
GGACTGTGTTGCTGTACCCGGCGGAGGGAGCGAGAGACGTGAGACAGCTG
CTGGTAGATCGGAAGAAAGGAAGGAAAGAAGACGGAGACGAAGGGGGAGG
GGTAAAGGGAGGAGGTCGAGAAGGTTGTGAATGGAAAAATACGTTGATTG
TCCTGGATGGCACGTGGGAGTCAGCGCGGAGGATGTATACTCGCAACACA
TGTCTCCACGGCCTGCCGACCGTGTGCCTCCCCCTCCCTTCTTCCCTCCC
TTTCCCCGTTCCATCCCCTACCCTGTCCTCCTCATCCACGCCACGAGCCA
GCGGGACGGACGGTATCGACGAACAATTAATTTGGCTCGCACGTCCGCCC
ATTTTCACTGTCCGCAAGGAGCCCCCAAAGGTCCTGGGAAAGGGAGGGAG
GAGCACAGCAGAGGCAGTGGCCTTGGTACTCTTCTTACTCGGGGAAAAAC
AGCTTGCAGAGGCTATCATTGAAGCCGTGCGAAGGGCGAACGGGATGCAG
CTTTCATTGACTGACCCTGCCAAAGTCCGGCACCGGCGAGAGCGGAAGGG
CTACATAGAAAACCTGTACAGTGCGAGCCACGAACAAGCCTTTTTTCACA
TGCGCTGAAGTGGAAAACATGATACAATAACTGAGACGATCGCTGACCAA
GTTCGCTCATCCGAGAGTAATTTCCAACCGCGTTGTCCTCACTATTCTCT
TCCTTTGTCGTTCGTGCTCTCAGGAGTCGGCGGGAGCCCAAGCAATGATC
CCACGGTTTCTAATACCTGCCACCTGTGCCTGTCCCCCACCACGCGCACA
TGTTTCTTTTTCTAAACGGAACATTGTGTGGATGGACTGGAGGGTGAATG
AAGCCTCGTCATTTGAGCTCAATGTTTGCGGCACCTCTTAAGAGTTACAG
TTGTTGCCGCGCGTCGGATCCTCGAGGGTGCCGTTGAACAATAGGGGAGG
GCAAAGTGAGCGACGAGAAAGGAGCAAAACGAGAACGATGGCCAGTCCGA
CATGCTTAAAGATAGAGCTCTTGGTCACAGAGCGCCGT
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Coding sequence (CDS) from alignment at chr20:31646..33333-

>NO20G00090.1 ID=NO20G00090.1|Name=NO20G00090.1|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at chr20:31646..33333- (Nannochloropsis oceanica)
ATGTCCGAGGAGGAAGACGCACAAGCGCTAATCGACCCTTCCATCACCGG
CAATGCCAGTACCTATCGCCCTTCCTGTGCGCGCTGCCGCCGCCCTCCGC
GTGTCTGCCTCTGCCCCTTTCTTTCTCCAGCGCGTCTAACCTTGCCTCCC
CACCTCTCAATTATCATCCTTCAACACGCGGCGGAAGGGAAGAGCAACCC
GGTCAAAGCTACCGTGTCAATTCTCGAGGCGGTGTTTGAATCTCAGGGAG
GGCAGGAGAAAGAGCTAGTAGAGACAGGCACTGGAGAAGTGAGAACTTTG
AGAAAGACGAACGAAGCACGCAATGGAGGGTTGATCGTCATATCATGCCC
AAAAGGCATGTTAAAAAGAGAAATGGATGCACGGCTGGCCCGCGCTTTTG
AGGAGGAGGGGACTGTGTTGCTGTACCCGGCGGAGGGAGCGAGAGACGTG
AGACAGCTGCTGGTAGATCGGAAGAAAGGAAGGAAAGAAGACGGAGACGA
AGGGGGAGGGGTAAAGGGAGGAGGTCGAGAAGGTTGTGAATGGAAAAATA
CGTTGATTGTCCTGGATGGCACGTGGGAGTCAGCGCGGAGGATGTATACT
CGCAACACATGTCTCCACGGCCTGCCGACCGTGTGCCTCCCCCTCCCTTC
TTCCCTCCCTTTCCCCGTTCCATCCCCTACCCTGTCCTCCTCATCCACGC
CACGAGCCAGCGGGACGGACGGTATCGACGAACAATTAATTTGGCTCGCA
CGTCCGCCCATTTTCACTGTCCGCAAGGAGCCCCCAAAGGTCCTGGGAAA
GGGAGGGAGGAGCACAGCAGAGGCAGTGGCCTTGGTACTCTTCTTACTCG
GGGAAAAACAGCTTGCAGAGGCTATCATTGAAGCCGTGCGAAGGGCGAAC
GGGATGCAGCTTTCATTGACTGACCCTGCCAAAGTCCGGCACCGGCGAGA
GCGGAAGGGCTACATAGAAAACCTGTACAGTGCGAGCCACGAACAAGCCT
TTTTTCACATGCGCTGA
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Synonyms
Publications