NO20G00060, NO20G00060 (gene) Nannochloropsis oceanica

Overview
NameNO20G00060
Unique NameNO20G00060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2360
Alignment locationchr20:19324..22528 -

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Properties
Property NameValue
DescriptionAnkyrin repeat-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:19324..22528 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO20G00060 vs. NCBI_GenBank
Match: EWM22232.1 (Ankyrin repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 323.9 bits (829), Expect = 6.000e-85
Identity = 178/334 (53.29%), Postives = 216/334 (64.67%), Query Frame = 0 
Query:    1 MPATMATETRGGGQEEGKTTGKAEAAGLNTPTMPDDESLVTEGSKLVAAFHTAAKAGDTATLSKLL--DSSASSQLFTLLLNARERKSGRTXXXXXXXXXXXXXXXXXXXXXXXVLVTDTEGYTPLDHARAKPRNAGCLECVRILQEHIREQPPPIKEVSVLLASFFEAPSDRAWMDWALEHYGPPLLDCKGRGHRSPLHLAVTHNDAGLLEELLEMGADPFAKDKEGVSPLDMVMMSGHKASIQALSRAMRTQLASFLGLALLFLLYRRGGSPQQAWLVLATLWPLGKTWHLLLLLGKEKGAARERALGEWLTYWALLVPVVLLEHAVSAHLL 333
            M AT  TE R G + EG            T  + +D ++  + S++ AAFH AAKAGD A LS LL   +S++    +LL++AR+ ++G T                       +L+TD  GYTPLD AR KP +    +C   +QE+I+  PPP K+V  LL SFFE P +RAW+DWA  HYGP LLD KGR  RSPLHLAV+H DA  LEELLEMGADPFAKD EG+SPLD+ M SGH+ SI+ LSRAM+ QL +FLGL LLFLLYR GG PQQAW VLATLWPLGKTW  LL  G    AAR  A+GEWL+YWAL+VPV LLE  + A LL
Sbjct:    1 MGATELTEERPGKEAEGPPDD-------CTFKVDEDAAVAAKASRVSAAFHEAAKAGDNAALSTLLLAFNSSTDARSSLLIDARDPRTGHTALHVACKAGAPLTVKWLLEKGASILITDKGGYTPLDLARVKPSDENIRDCACRIQEYIQAHPPPYKKVGPLLGSFFEPPLERAWLDWACLHYGPSLLDLKGRDQRSPLHLAVSHKDAAFLEELLEMGADPFAKDTEGLSPLDLAMRSGHRESIRVLSRAMQMQLVAFLGLTLLFLLYRHGGDPQQAWTVLATLWPLGKTWQ-LLWTGSGLSAARRGAMGEWLSYWALIVPVFLLEGTLPAGLL 326
The following BLAST results are available for this feature:
BLAST of NO20G00060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22232.16.000e-8553.29Ankyrin repeat-containing protein [Nannochloropsis... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002529NSK002529Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|86639gene_6214Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100254g4gene8209Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00060.4NO20G00060.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G00060.3NO20G00060.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G00060.2NO20G00060.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G00060.1NO20G00060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00060.4NO20G00060.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G00060.3NO20G00060.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G00060.2NO20G00060.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G00060.1NO20G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00060 ID=NO20G00060|Name=NO20G00060|organism=Nannochloropsis oceanica|type=gene|length=2360bp
CAGGCGACGTTGCCGGAATTATGCCAGCGACCATGGCGACGGAAACGCGA
GGAGGAGGTCAGGAGGAGGGCAAGACTACGGGAAAGGCGGAAGCAGCAGG
ACTTAACACACCCACCATGCCCGACGACGAGAGCCTCGTGACCGAAGGCA
GCAAgtaagtgaggaggataagggtggttacgaggggcaggggtccttgc
gcacgtcgttgcagtgtttgatcgggaggacctcatttcttttcccttca
ctttctaccctccccaaaacagACTCGTCGCCGCCTTCCATACCGCCGCC
AAGGCCGGCGACACCGCCACCCTCTCCAAACTTCTGGATTCCTCCGCCTC
CAGCCAACTTTTCACTCTCCTTCTTAATGCCCGCGAGCGCAAAAGTGGGA
GGACAGCCCTTCACACCGCTTGCCGGGCCGGCGTCCCCACCAGTCTTGCC
TGGCTGTTGGACAAAGGTGCTTCAGTCCTCGTCACTGACACgtacgtttg
tcacgtacacctgcggggatgcttctatgtaaaaaaggattgcgcgtagt
cgtctacctctatcacatgattacagtgcttactcactcattctgtcccc
attcatttattccctcccttccttccttcctcccccctccctcccttcct
ccttccctccctccctcccagCGAGGGCTACACCCCTCTGGATCACGCTC
GCGCCAAGCCCCGCAATGCCGGATGCCTTGAGTGCGTGCGCATCCTCCAA
GAACACATCCGAGAGCAGCCCCCTCCGATCAAAGAGgtacgtgcgtttca
tcccctttcctccctccctccctccctccctccctccctccctccctccc
accctccctctctccctctctccctccctccctccttccttccctcgcat
tctatggctaagcatggtcgacgttcgagcctagttccacgacagagctc
tcccttctcttaggcttcacattgtgcctgcccccgcgccaccctcttct
atcgcttccacaccaacctccctccccctccctccctccctccctccctt
tcattcctccagGTGAGTGTCCTTTTGGCCTCCTTCTTCGAGGCCCCATC
AGACAGAGCGTGGATGGACTGGGCTCTCGAGCATTACGGTCCACCCCTCC
TCGACTGTAAGgtagtagcccgccctccccccctccccccctcccgtcct
ctctccaccacaagaacaagggatctcttgtccctgccttgacgaccttt
ctaagcctcctcccctccctccctccctcccctcctccttcaccagGGGC
GAGGCCACCGCTCGCCCCTGCACTTGGCCGTGACGCACAACGACGCCGGC
CTGCTGGAAGAGCTGCTGGAGATGGgtgggtcgcaagagagggagggagg
gaaggagggagggagggagggaggtccttgatggctgtggctctatgtcc
ttgctaaggtctccctccctccctccctccctccctccctccctgcctcc
ctccctccctccctccctccctgcctgcccagGTGCCGATCCATTCGCGA
AGGACAAGGAAGGAGTATCCCCTTTGGACATGGTAATGATGAGTGGCCAC
AAAGCCAGCATCCAAGCCCTCTCCCGCGCCATGAGGACACAACTGgtgcg
tctcccccctccctctttccctccttctcctcccatctcgcccttcccag
gattgtcgcccacctccacccgcctacctcttctccctccgtccctcccc
tcatccctcccatggcttaatttctcacccaccatctcctcctcctcctc
ctcctcctcctcctcctcctcctccttcctccagGCATCCTTCCTGGGCC
TTGCGCTCCTCTTCCTCCTCTATCGTCGGGGCGGAAGCCCTCAACAGgta
cgtcccccctcgtccgctccttgaacaccgcactccttcgctaactcgct
cctcctgctcctccctccctccctccctccctccctccctccctccctcc
ctttttccctccctgtcacagGCATGGCTAGTGCTGGCAACGCTCTGGCC
GTTGGGCAAGACGTGGCACCTGCTGCTGCTGCTGGGGAAAGAGAAGGGCG
CGGCGAGGGAGCGGGCGTTGGGGGAATGGTGAGGGAGGGAGGGCAGTGTT
GAAGACGTGAGGCAGGAAATATGATTGAATGTGACCTCACGTAGGCGTGC
ATGTAGACGTAGATGAAGAAGTAGATATGCACATGTATGTATATGATATA
CATATAAAGGGATGAATAAACTTGTGGACATAGATGTAAACGTAGATGCA
TGTATGTAACTTGAGAGCTATACATACACGTAGAGGAACATATAGATTCT
AGACATTCAC
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protein sequence of NO20G00060.4

>NO20G00060.4-protein ID=NO20G00060.4-protein|Name=NO20G00060.4|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MPATMATETRGGGQEEGKTTGKAEAAGLNTPTMPDDESLVTEGSKLVAAF
HTAAKAGDTATLSKLLDSSASSQLFTLLLNARERKSGRTALHTACRAGVP
TSLAWLLDKGASVLVTDTEGYTPLDHARAKPRNAGCLECVRILQEHIREQ
PPPIKEVSVLLASFFEAPSDRAWMDWALEHYGPPLLDCKGRGHRSPLHLA
VTHNDAGLLEELLEMGADPFAKDKEGVSPLDMVMMSGHKASIQALSRAMR
TQLASFLGLALLFLLYRRGGSPQQAWLVLATLWPLGKTWHLLLLLGKEKG
AARERALGEW*
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protein sequence of NO20G00060.3

>NO20G00060.3-protein ID=NO20G00060.3-protein|Name=NO20G00060.3|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MPATMATETRGGGQEEGKTTGKAEAAGLNTPTMPDDESLVTEGSKLVAAF
HTAAKAGDTATLSKLLDSSASSQLFTLLLNARERKSGRTALHTACRAGVP
TSLAWLLDKGASVLVTDTEGYTPLDHARAKPRNAGCLECVRILQEHIREQ
PPPIKEVSVLLASFFEAPSDRAWMDWALEHYGPPLLDCKGRGHRSPLHLA
VTHNDAGLLEELLEMGADPFAKDKEGVSPLDMVMMSGHKASIQALSRAMR
TQLASFLGLALLFLLYRRGGSPQQAWLVLATLWPLGKTWHLLLLLGKEKG
AARERALGEWLTYWALLVPVVLLEHAVSAHLLPSPIFQQLLAPRSQGRQE
K*
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protein sequence of NO20G00060.2

>NO20G00060.2-protein ID=NO20G00060.2-protein|Name=NO20G00060.2|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MPATMATETRGGGQEEGKTTGKAEAAGLNTPTMPDDESLVTEGSKLVAAF
HTAAKAGDTATLSKLLDSSASSQLFTLLLNARERKSGRTALHTACRAGVP
TSLAWLLDKGASVLVTDTEGYTPLDHARAKPRNAGCLECVRILQEHIREQ
PPPIKEVSVLLASFFEAPSDRAWMDWALEHYGPPLLDCKGRGHRSPLHLA
VTHNDAGLLEELLEMGADPFAKDKEGVSPLDMVMMSGHKASIQALSRAMR
TQLASFLGLALLFLLYRRGGSPQQAWLVLATLWPLGKTWHLLLLLGKEKG
AARERALGEWLTYWALLVPVVLLEHAVSAHLLPSPIFQQLLAPRSQGRQE
NGAVLRTLTDLYMITKIVATIYLIYPASRGARRVSRWLEGRREGGREEKM
KKTRDGNDEKIKKKDD*
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protein sequence of NO20G00060.1

>NO20G00060.1-protein ID=NO20G00060.1-protein|Name=NO20G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MPATMATETRGGGQEEGKTTGKAEAAGLNTPTMPDDESLVTEGSKLVAAF
HTAAKAGDTATLSKLLDSSASSQLFTLLLNARERKSGRTALHTACRAGVP
TSLAWLLDKGASVLVTDTEGYTPLDHARAKPRNAGCLECVRILQEHIREQ
PPPIKEVSVLLASFFEAPSDRAWMDWALEHYGPPLLDCKGRGHRSPLHLA
VTHNDAGLLEELLEMGADPFAKDKEGVSPLDMVMMSGHKASIQALSRAMR
TQLASFLGLALLFLLYRRGGSPQQAWLVLATLWPLGKTWHLLLLLGKEKG
AARERALGEWLTYWALLVPVVLLEHAVSAHLLPSPIFQQLLAPRSQGRQE
K*
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Synonyms
Publications