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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr20 | genome | chr20:19324..22528 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G00060.1 vs.
Match: EWM22232.1 (Ankyrin repeat-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 366.3 bits (939), Expect = 1.100e-97 Identity = 193/334 (57.78%), Postives = 235/334 (70.36%), Query Frame = 0
Query: 1 MPATMATETRGGGQEEGKTTGKAEAAGLNTPTMPDDESLVTEGSKLVAAFHTAAKAGDTATLSKLL--DSSASSQLFTLLLNARERKSGRTALHTACRAGVPTSLAWLLDKGASVLVTDTEGYTPLDHARAKPRNAGCLECVRILQEHIREQPPPIKEVSVLLASFFEAPSDRAWMDWALEHYGPPLLDCKGRGHRSPLHLAVTHNDAGLLEELLEMGADPFAKDKEGVSPLDMVMMSGHKASIQALSRAMRTQLASFLGLALLFLLYRRGGSPQQAWLVLATLWPLGKTWHLLLLLGKEKGAARERALGEWLTYWALLVPVVLLEHAVSAHLL 333
M AT TE R G + EG T + +D ++ + S++ AAFH AAKAGD A LS LL +S++ +LL++AR+ ++G TALH AC+AG P ++ WLL+KGAS+L+TD GYTPLD AR KP + +C +QE+I+ PPP K+V LL SFFE P +RAW+DWA HYGP LLD KGR RSPLHLAV+H DA LEELLEMGADPFAKD EG+SPLD+ M SGH+ SI+ LSRAM+ QL +FLGL LLFLLYR GG PQQAW VLATLWPLGKTW LL G AAR A+GEWL+YWAL+VPV LLE + A LL
Sbjct: 1 MGATELTEERPGKEAEGPPDDC-------TFKVDEDAAVAAKASRVSAAFHEAAKAGDNAALSTLLLAFNSSTDARSSLLIDARDPRTGHTALHVACKAGAPLTVKWLLEKGASILITDKGGYTPLDLARVKPSDENIRDCACRIQEYIQAHPPPYKKVGPLLGSFFEPPLERAWLDWACLHYGPSLLDLKGRDQRSPLHLAVSHKDAAFLEELLEMGADPFAKDTEGLSPLDLAMRSGHRESIRVLSRAMQMQLVAFLGLTLLFLLYRHGGDPQQAWTVLATLWPLGKTWQ-LLWTGSGLSAARRGAMGEWLSYWALIVPVFLLEGTLPAGLL 326
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO20G00060.1 ID=NO20G00060.1|Name=NO20G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1571bp
CAGGCGACGTTGCCGGAATTATGCCAGCGACCATGGCGACGGAAACGCGA
GGAGGAGGTCAGGAGGAGGGCAAGACTACGGGAAAGGCGGAAGCAGCAGG
ACTTAACACACCCACCATGCCCGACGACGAGAGCCTCGTGACCGAAGGCA
GCAAACTCGTCGCCGCCTTCCATACCGCCGCCAAGGCCGGCGACACCGCC
ACCCTCTCCAAACTTCTGGATTCCTCCGCCTCCAGCCAACTTTTCACTCT
CCTTCTTAATGCCCGCGAGCGCAAAAGTGGGAGGACAGCCCTTCACACCG
CTTGCCGGGCCGGCGTCCCCACCAGTCTTGCCTGGCTGTTGGACAAAGGT
GCTTCAGTCCTCGTCACTGACACCGAGGGCTACACCCCTCTGGATCACGC
TCGCGCCAAGCCCCGCAATGCCGGATGCCTTGAGTGCGTGCGCATCCTCC
AAGAACACATCCGAGAGCAGCCCCCTCCGATCAAAGAGGTGAGTGTCCTT
TTGGCCTCCTTCTTCGAGGCCCCATCAGACAGAGCGTGGATGGACTGGGC
TCTCGAGCATTACGGTCCACCCCTCCTCGACTGTAAGGGGCGAGGCCACC
GCTCGCCCCTGCACTTGGCCGTGACGCACAACGACGCCGGCCTGCTGGAA
GAGCTGCTGGAGATGGGTGCCGATCCATTCGCGAAGGACAAGGAAGGAGT
ATCCCCTTTGGACATGGTAATGATGAGTGGCCACAAAGCCAGCATCCAAG
CCCTCTCCCGCGCCATGAGGACACAACTGGCATCCTTCCTGGGCCTTGCG
CTCCTCTTCCTCCTCTATCGTCGGGGCGGAAGCCCTCAACAGGCATGGCT
AGTGCTGGCAACGCTCTGGCCGTTGGGCAAGACGTGGCACCTGCTGCTGC
TGCTGGGGAAAGAGAAGGGCGCGGCGAGGGAGCGGGCGTTGGGGGAATGG
CTCACGTACTGGGCTCTGCTCGTTCCCGTCGTCCTTCTCGAACACGCCGT
CAGTGCCCACCTCCTTCCCTCCCCCATCTTCCAGCAGCTCCTTGCGCCTC
GCTCCCAGGGCAGGCAAGAGAAGTAGGTGGAGAGAGAGAGAGTGAGAGAG
CGAGGGAGGGAAGGACGGTCAAATCTCGCGAGCAGGACCATGAGTATTCT
TCGTTTCGCTATAGCTACATATATTTTGTTCGTGTTTCTTCTCTCGTTTT
CCTTTTTCAGGATTACGCTTCTGCGGATACCTACGGTGGAGCTGTGCTGC
GGACACTCACGGACTTGTACATGATTACCAAGATCGTGGCCACGATCTAT
TTGATATATCCCGCCTCGAGAGGGGCCAGGAGGGTGTCCCGATGGCTGGA
GGGAAGGAGGGAGGGAGGGAGGGAAGAGAAGATGAAGAAGACTAGAGATG
GGAATGATGAGAAGATCAAGAAGAAGGATGACTGAATGCGGGAAAAATGA
GGAGAAATGGAGACTATGAAAGAAATCTTCGTTGAAATTAACAGGCGGGA
GAGTATGACGAACGTGTTCGTTGATGGGCAGATGTGCTCATTGCCATCAT
AGTCATAGTATCATTTTTTTT back to topprotein sequence of NO20G00060.1 >NO20G00060.1-protein ID=NO20G00060.1-protein|Name=NO20G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MPATMATETRGGGQEEGKTTGKAEAAGLNTPTMPDDESLVTEGSKLVAAF
HTAAKAGDTATLSKLLDSSASSQLFTLLLNARERKSGRTALHTACRAGVP
TSLAWLLDKGASVLVTDTEGYTPLDHARAKPRNAGCLECVRILQEHIREQ
PPPIKEVSVLLASFFEAPSDRAWMDWALEHYGPPLLDCKGRGHRSPLHLA
VTHNDAGLLEELLEMGADPFAKDKEGVSPLDMVMMSGHKASIQALSRAMR
TQLASFLGLALLFLLYRRGGSPQQAWLVLATLWPLGKTWHLLLLLGKEKG
AARERALGEWLTYWALLVPVVLLEHAVSAHLLPSPIFQQLLAPRSQGRQE
K* back to topmRNA from alignment at chr20:19324..22528- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO20G00060.1 ID=NO20G00060.1|Name=NO20G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=3205bp|location=Sequence derived from alignment at chr20:19324..22528- (Nannochloropsis oceanica)
CAGGCGACGTTGCCGGAATTATGCCAGCGACCATGGCGACGGAAACGCGA
GGAGGAGGTCAGGAGGAGGGCAAGACTACGGGAAAGGCGGAAGCAGCAGG
ACTTAACACACCCACCATGCCCGACGACGAGAGCCTCGTGACCGAAGGCA
GCAAGTAAGTGAGGAGGATAAGGGTGGTTACGAGGGGCAGGGGTCCTTGC
GCACGTCGTTGCAGTGTTTGATCGGGAGGACCTCATTTCTTTTCCCTTCA
CTTTCTACCCTCCCCAAAACAGACTCGTCGCCGCCTTCCATACCGCCGCC
AAGGCCGGCGACACCGCCACCCTCTCCAAACTTCTGGATTCCTCCGCCTC
CAGCCAACTTTTCACTCTCCTTCTTAATGCCCGCGAGCGCAAAAGTGGGA
GGACAGCCCTTCACACCGCTTGCCGGGCCGGCGTCCCCACCAGTCTTGCC
TGGCTGTTGGACAAAGGTGCTTCAGTCCTCGTCACTGACACGTACGTTTG
TCACGTACACCTGCGGGGATGCTTCTATGTAAAAAAGGATTGCGCGTAGT
CGTCTACCTCTATCACATGATTACAGTGCTTACTCACTCATTCTGTCCCC
ATTCATTTATTCCCTCCCTTCCTTCCTTCCTCCCCCCTCCCTCCCTTCCT
CCTTCCCTCCCTCCCTCCCAGCGAGGGCTACACCCCTCTGGATCACGCTC
GCGCCAAGCCCCGCAATGCCGGATGCCTTGAGTGCGTGCGCATCCTCCAA
GAACACATCCGAGAGCAGCCCCCTCCGATCAAAGAGGTACGTGCGTTTCA
TCCCCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
ACCCTCCCTCTCTCCCTCTCTCCCTCCCTCCCTCCTTCCTTCCCTCGCAT
TCTATGGCTAAGCATGGTCGACGTTCGAGCCTAGTTCCACGACAGAGCTC
TCCCTTCTCTTAGGCTTCACATTGTGCCTGCCCCCGCGCCACCCTCTTCT
ATCGCTTCCACACCAACCTCCCTCCCCCTCCCTCCCTCCCTCCCTCCCTT
TCATTCCTCCAGGTGAGTGTCCTTTTGGCCTCCTTCTTCGAGGCCCCATC
AGACAGAGCGTGGATGGACTGGGCTCTCGAGCATTACGGTCCACCCCTCC
TCGACTGTAAGGTAGTAGCCCGCCCTCCCCCCCTCCCCCCCTCCCGTCCT
CTCTCCACCACAAGAACAAGGGATCTCTTGTCCCTGCCTTGACGACCTTT
CTAAGCCTCCTCCCCTCCCTCCCTCCCTCCCCTCCTCCTTCACCAGGGGC
GAGGCCACCGCTCGCCCCTGCACTTGGCCGTGACGCACAACGACGCCGGC
CTGCTGGAAGAGCTGCTGGAGATGGGTGGGTCGCAAGAGAGGGAGGGAGG
GAAGGAGGGAGGGAGGGAGGGAGGTCCTTGATGGCTGTGGCTCTATGTCC
TTGCTAAGGTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCTCC
CTCCCTCCCTCCCTCCCTCCCTGCCTGCCCAGGTGCCGATCCATTCGCGA
AGGACAAGGAAGGAGTATCCCCTTTGGACATGGTAATGATGAGTGGCCAC
AAAGCCAGCATCCAAGCCCTCTCCCGCGCCATGAGGACACAACTGGTGCG
TCTCCCCCCTCCCTCTTTCCCTCCTTCTCCTCCCATCTCGCCCTTCCCAG
GATTGTCGCCCACCTCCACCCGCCTACCTCTTCTCCCTCCGTCCCTCCCC
TCATCCCTCCCATGGCTTAATTTCTCACCCACCATCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTTCCTCCAGGCATCCTTCCTGGGCC
TTGCGCTCCTCTTCCTCCTCTATCGTCGGGGCGGAAGCCCTCAACAGGTA
CGTCCCCCCTCGTCCGCTCCTTGAACACCGCACTCCTTCGCTAACTCGCT
CCTCCTGCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTTTTTCCCTCCCTGTCACAGGCATGGCTAGTGCTGGCAACGCTCTGGCC
GTTGGGCAAGACGTGGCACCTGCTGCTGCTGCTGGGGAAAGAGAAGGGCG
CGGCGAGGGAGCGGGCGTTGGGGGAATGGTGAGGGAGGGAGGGCAGTGTT
GAAGACGTGAGGCAGGAAATATGATTGAATGTGACCTCACGTAGGCGTGC
ATGTAGACGTAGATGAAGAAGTAGATATGCACATGTATGTATATGATATA
CATATAAAGGGATGAATAAACTTGTGGACATAGATGTAAACGTAGATGCA
TGTATGTAACTTGAGAGCTATACATACACGTAGAGGAACATATAGATTCT
AGACATTCACTTGGCACGGCCTCTGCGCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCATACCACC
CAGGCTCACGTACTGGGCTCTGCTCGTTCCCGTCGTCCTTCTCGAACACG
CCGTCAGTGCCCACCTCCTTCCCTCCCCCATCTTCCAGCAGCTCCTTGCG
CCTCGCTCCCAGGGCAGGCAAGAGAAGTAGGTGGAGAGAGAGAGAGTGAG
AGAGCGAGGGAGGGAAGGACGGTCAAATCTCGCGAGCAGGACCATGAGTA
TTCTTCGTTTCGCTATAGCTACATATATTTTGTTCGTGTTTCTTCTCTCG
TTTTCCTTTTTCAGGATTACGCTTCTGCGGATACCTACGGGTAAATATAC
GATTGAGGATACCCACAGGCGGATATACGATTGCCACAATAGTAACCGTG
CTCTTCTGGATTCGAGCGCGTCCTCTCACCTCCCTCCCTCTATCCCTCCC
TTCCTCTCTCCCTCTCTCAGTGGAGCTGTGCTGCGGACACTCACGGACTT
GTACATGATTACCAAGATCGTGGCCACGATCTATTTGATATATCCCGCCT
CGAGAGGGGCCAGGAGGGTGTCCCGATGGCTGGAGGGAAGGAGGGAGGGA
GGGAGGGAAGAGAAGATGAAGAAGACTAGAGATGGGAATGATGAGAAGAT
CAAGAAGAAGGATGACTGAATGCGGGAAAAATGAGGAGAAATGGAGACTA
TGAAAGAAATCTTCGTTGAAATTAACAGGCGGGAGAGTATGACGAACGTG
TTCGTTGATGGGCAGATGTGCTCATTGCCATCATAGTCATAGTATCATTT
TTTTT back to topCoding sequence (CDS) from alignment at chr20:19324..22528- >NO20G00060.1 ID=NO20G00060.1|Name=NO20G00060.1|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at chr20:19324..22528- (Nannochloropsis oceanica)
ATGCCAGCGACCATGGCGACGGAAACGCGAGGAGGAGGTCAGGAGGAGGG
CAAGACTACGGGAAAGGCGGAAGCAGCAGGACTTAACACACCCACCATGC
CCGACGACGAGAGCCTCGTGACCGAAGGCAGCAAACTCGTCGCCGCCTTC
CATACCGCCGCCAAGGCCGGCGACACCGCCACCCTCTCCAAACTTCTGGA
TTCCTCCGCCTCCAGCCAACTTTTCACTCTCCTTCTTAATGCCCGCGAGC
GCAAAAGTGGGAGGACAGCCCTTCACACCGCTTGCCGGGCCGGCGTCCCC
ACCAGTCTTGCCTGGCTGTTGGACAAAGGTGCTTCAGTCCTCGTCACTGA
CACCGAGGGCTACACCCCTCTGGATCACGCTCGCGCCAAGCCCCGCAATG
CCGGATGCCTTGAGTGCGTGCGCATCCTCCAAGAACACATCCGAGAGCAG
CCCCCTCCGATCAAAGAGGTGAGTGTCCTTTTGGCCTCCTTCTTCGAGGC
CCCATCAGACAGAGCGTGGATGGACTGGGCTCTCGAGCATTACGGTCCAC
CCCTCCTCGACTGTAAGGGGCGAGGCCACCGCTCGCCCCTGCACTTGGCC
GTGACGCACAACGACGCCGGCCTGCTGGAAGAGCTGCTGGAGATGGGTGC
CGATCCATTCGCGAAGGACAAGGAAGGAGTATCCCCTTTGGACATGGTAA
TGATGAGTGGCCACAAAGCCAGCATCCAAGCCCTCTCCCGCGCCATGAGG
ACACAACTGGCATCCTTCCTGGGCCTTGCGCTCCTCTTCCTCCTCTATCG
TCGGGGCGGAAGCCCTCAACAGGCATGGCTAGTGCTGGCAACGCTCTGGC
CGTTGGGCAAGACGTGGCACCTGCTGCTGCTGCTGGGGAAAGAGAAGGGC
GCGGCGAGGGAGCGGGCGTTGGGGGAATGGCTCACGTACTGGGCTCTGCT
CGTTCCCGTCGTCCTTCTCGAACACGCCGTCAGTGCCCACCTCCTTCCCT
CCCCCATCTTCCAGCAGCTCCTTGCGCCTCGCTCCCAGGGCAGGCAAGAG
AAGTAG back to top
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