NO19G02630, NO19G02630 (gene) Nannochloropsis oceanica

Overview
NameNO19G02630
Unique NameNO19G02630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2769
Alignment locationchr19:788671..791439 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:788671..791439 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO19G02630 vs. NCBI_GenBank
Match: EWM23761.1 (hypothetical protein Naga_101131g1 [Nannochloropsis gaditana])

HSP 1 Score: 179.1 bits (453), Expect = 1.800e-41
Identity = 93/114 (81.58%), Postives = 102/114 (89.47%), Query Frame = 0 
Query:    1 MVKSSLLVLALAAAAQGFLLPVPQQRTQTTSTQLAAAAFTTVSGRVVEDPKGELQKVLTPSPKDEARRARVGKLLEAAGLTYTGEAIFPSNRYYGGAVYKDFTKAVGVEPADQV 115
            MVK+SL +L+LAA AQGFLLPVP      +STQLAA+AFTTVSGR+VEDPKGELQKVLTPSPKDEARRARV K+LEAAGL YTGEAIF SNR+YGGAVY+DFT AVGVEPADQV
Sbjct:   25 MVKASLCILSLAAVAQGFLLPVPAPHRPPSSTQLAASAFTTVSGRIVEDPKGELQKVLTPSPKDEARRARVAKVLEAAGLQYTGEAIFSSNRWYGGAVYRDFTDAVGVEPADQV 138
[Close]
BLAST of NO19G02630 vs. NCBI_GenBank
Match: EWM19920.1 (hypothetical protein Naga_103074g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 88.2 bits (217), Expect = 4.300e-14
Identity = 41/49 (83.67%), Postives = 46/49 (93.88%), Query Frame = 0 
Query:  113 QVGAAALIVAAGNRGYKPFHKKVGTFLDVLHSLTKSILSEKDEFEGPDL 162
            QVGAAALIVAAGN+GYKPFHKKVGTF++VLHSL K+IL+EKDEFEG  L
Sbjct:    1 QVGAAALIVAAGNKGYKPFHKKVGTFMEVLHSLVKTILAEKDEFEGASL 49
The following BLAST results are available for this feature:
BLAST of NO19G02630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23761.11.800e-4181.58hypothetical protein Naga_101131g1 [Nannochloropsi... [more]
EWM19920.14.300e-1483.67hypothetical protein Naga_103074g1, partial [Nanno... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR099ncniR099Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02630.1NO19G02630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613688gene_10956Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101131g1gene6694Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02630.1NO19G02630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02630 ID=NO19G02630|Name=NO19G02630|organism=Nannochloropsis oceanica|type=gene|length=2769bp
CTCGTACATACGCAGGGCCCCTGGTCTCCTGCTTTCCTCTGCCGCCGTGG
TGTTTGACTCGGTTACTGAACCACGGACTGTCCCCTGGGAAGGTTTCGCG
AGACACATCTCATGGGGTTTCGAAAACCTTTGTTGACGTGGGCGTTTTCA
AAGATAGGGGATCGGTAAGACTCTTTTCTTGCCTCCGGCTCCCTTCTTGC
TGTTGCTGTTGGGCTCTGTGTGGTGTGGCTGCCACTTGTTGTTTGTTGTC
TTTTTACCTCGCTGGCCCCGAGCCCAATTTGGTGTCCTCCTTCCTGCTGT
TGGACTCTGCATTATAATCTACACAGGTTGGCTGCGTAGAGACGAGGGGG
TAGACAGCAGGGGAGGCTGGGAAGCTCTGGATGGGTGGAGGAGGAGGATA
CACACAGCCATCTCGCATGACGTGAGACCAGCTTATTACTTCCAAATCCA
GGAGCAACCAGACTGGCAGCCGCATCCGCGTCATGAGCATTGTCGACATC
AGGAGTACCATATGCATACATGCTGACTGATCGGTCGCTGGACATTGATA
CGGTCAAAATCCAACCAAGCGACATAGCGCCGATCCCCTCATATCATCCC
CTCCCCTCACCCCAAACAGCAGCAACATGGTCAAGAGCAGCCTCCTCGTC
CTGGCCCTCGCGGCCGCAGCCCAAGGCTTCCTCCTCCCCGTCCCGCAGCA
AAGAACACAGACCACCAGCACCCAGCTAGCAGCGGCTGCCTTCACCACCG
TGTCGGGCCGTGTGGTGGAGGACCCCAAGGGCGAGCTGCAGAAGGTCCTG
ACCCCCTCTCCCAAGGATGAGGCGCGACGAGCACGCGTGGGGAAGCTCTT
GGAGGCGGCGGGGTTGACATATACTGGGGAGGCTATCTTCCCTTCCAACC
Ggtacgtcgcgtttgactagtggccctccctcagtccctccttccctccc
tccttccctcctccctgatatttagcattgtggcttgccgtcttggatcg
atcccatttccatgacatgtggtatatagcatcactgtctcacaagtgtc
ttcgttctctctcctgtcgatcttccttcccttgcctcccttctgttctt
tcacctcattttggcctaatccctccctccctccctccctccctccctcc
cttgcagGTACTACGGCGGGGCTGTCTACAAGGACTTCACCAAGGCAGTC
GGCGTCGAGCCCGCGGACCAGgtagggatagaggaagggagggacggagg
aaccgatatagatatatgtatatatgcacttcttcagacataaatatatg
tatatatctgtggggatgaggtcgacggggcctgagcgtcggctggacct
cgtcatcctacgccatcctctatttccttcgttacacctctctgagtctc
taccacaccactccctccctcctcgcttgggtttccctcagGTGGGAGCA
GCAGCACTGATCGTAGCGGCGGGCAACAGGGGCTACAAACCATTCCACAA
GAAGgtgcgcccctccctccctccctcccttcttggattcagctccctca
cccgctttccactctttctcttcactcactccctccctcccgccctacct
ccctccattctcagGTGGGCACGTTTCTTGACGTCCTCCACTCCCTGACC
AAGAGCATCCTCTCGGAAAAGGACGAGTTCGAGGgtacgtactctccctc
cctccctccctccctccccccccccgttccgtcacaccacttgcccctcg
cccgtcactcccctcatccctccctccctccctccctccctccctccctc
cctccctccccctctgccagGCCCCGACCTTGCTAAGGTATTCACCGGCC
TAGTCAAGCTCAACTACGAGGGCTCCCCCAAGCAGCACATTCGgtacgtc
tttccctccctcccgccctccctccctccctcccttccttccttcttcca
tccgtttggacttacacttgaatcctctccctgcctccctccctccctcc
ctccctcccttcacagCGATCTTGTCCGTGAAATATCTGCCCGTATCGAG
GCCGGCGAGCTGAATGGCGCACAGgtatctccctccctccctccctccct
cccctccctccctccttccctccctccctcccttcctccctcctttcttc
cttttctcccctcgctttttccttccctttggcctttctccatccccctc
cttccttctcctcctcagtgtgaccgacttcctggacattcacacctttc
tccccccttccctcccccctccctccccctcgtccctccccccctccttt
agATCGCCGCTGTCCTGGACAGCTCGGCTTCTTTCTGGTTCACTCCTGAG
GACTCTTTTTTCACCGCCATCGCCCTCAAGCTCTCTCCCTCCGACGTCTC
GGACCAGgtgcgtcctccctccctccctccctccctctctccctccctcc
ctccctccttcgtgtctcttttcttgccctcggcgcccactcactccccc
ccccctctctccctccctccctccctccctccctccctccctcctcagGA
CAAGGCTCGCGTGAAGGACGCCCTGGCTCGCTTTACCTCCCGCCTTCCCC
ATCTAAAGGAGGAGGGCGTGCTCCCCGCGGCCTTCCTCTCCTCCTTCTAA
AGGGAGGGAGGGAAAGGAGGGAGGGAGGATTGTATGGGTGTGTGGAGGTG
AAAGACGCACCGAGAGAAGACACGGTATATGATGGGGGGTTAGGGAGGAT
GCAAGGAAGGGGGGGAGGG
back to top

protein sequence of NO19G02630.1

>NO19G02630.1-protein ID=NO19G02630.1-protein|Name=NO19G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MVKSSLLVLALAAAAQGFLLPVPQQRTQTTSTQLAAAAFTTVSGRVVEDP
KGELQKVLTPSPKDEARRARVGKLLEAAGLTYTGEAIFPSNRYYGGAVYK
DFTKAVGVEPADQVGAAALIVAAGNRGYKPFHKKVGTFLDVLHSLTKSIL
SEKDEFEGPDLAKVFTGLVKLNYEGSPKQHIRDLVREISARIEAGELNGA
QIAAVLDSSASFWFTPEDSFFTAIALKLSPSDVSDQDKARVKDALARFTS
RLPHLKEEGVLPAAFLSSF*
back to top
Synonyms
Publications