NO19G02630.1, NO19G02630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02630.1
Unique NameNO19G02630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1555
Alignment locationchr19:788671..791439 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:788671..791439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO19G02630.1 vs.
Match: EWM23761.1 (hypothetical protein Naga_101131g1 [Nannochloropsis gaditana])

HSP 1 Score: 179.1 bits (453), Expect = 1.800e-41
Identity = 93/114 (81.58%), Postives = 102/114 (89.47%), Query Frame = 0 
Query:    1 MVKSSLLVLALAAAAQGFLLPVPQQRTQTTSTQLAAAAFTTVSGRVVEDPKGELQKVLTPSPKDEARRARVGKLLEAAGLTYTGEAIFPSNRYYGGAVYKDFTKAVGVEPADQV 115
            MVK+SL +L+LAA AQGFLLPVP      +STQLAA+AFTTVSGR+VEDPKGELQKVLTPSPKDEARRARV K+LEAAGL YTGEAIF SNR+YGGAVY+DFT AVGVEPADQV
Sbjct:   25 MVKASLCILSLAAVAQGFLLPVPAPHRPPSSTQLAASAFTTVSGRIVEDPKGELQKVLTPSPKDEARRARVAKVLEAAGLQYTGEAIFSSNRWYGGAVYRDFTDAVGVEPADQV 138
The following BLAST results are available for this feature:
BLAST of NO19G02630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23761.11.800e-4181.58hypothetical protein Naga_101131g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02630NO19G02630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02630.1NO19G02630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02630.1.cds1NO19G02630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02630.1.cds2NO19G02630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02630.1.cds3NO19G02630.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02630.1.cds4NO19G02630.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02630.1.cds5NO19G02630.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02630.1.cds6NO19G02630.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02630.1.cds7NO19G02630.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02630.1.cds8NO19G02630.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02630.1 ID=NO19G02630.1|Name=NO19G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1555bp
CTCGTACATACGCAGGGCCCCTGGTCTCCTGCTTTCCTCTGCCGCCGTGG
TGTTTGACTCGGTTACTGAACCACGGACTGTCCCCTGGGAAGGTTTCGCG
AGACACATCTCATGGGGTTTCGAAAACCTTTGTTGACGTGGGCGTTTTCA
AAGATAGGGGATCGGTAAGACTCTTTTCTTGCCTCCGGCTCCCTTCTTGC
TGTTGCTGTTGGGCTCTGTGTGGTGTGGCTGCCACTTGTTGTTTGTTGTC
TTTTTACCTCGCTGGCCCCGAGCCCAATTTGGTGTCCTCCTTCCTGCTGT
TGGACTCTGCATTATAATCTACACAGGTTGGCTGCGTAGAGACGAGGGGG
TAGACAGCAGGGGAGGCTGGGAAGCTCTGGATGGGTGGAGGAGGAGGATA
CACACAGCCATCTCGCATGACGTGAGACCAGCTTATTACTTCCAAATCCA
GGAGCAACCAGACTGGCAGCCGCATCCGCGTCATGAGCATTGTCGACATC
AGGAGTACCATATGCATACATGCTGACTGATCGGTCGCTGGACATTGATA
CGGTCAAAATCCAACCAAGCGACATAGCGCCGATCCCCTCATATCATCCC
CTCCCCTCACCCCAAACAGCAGCAACATGGTCAAGAGCAGCCTCCTCGTC
CTGGCCCTCGCGGCCGCAGCCCAAGGCTTCCTCCTCCCCGTCCCGCAGCA
AAGAACACAGACCACCAGCACCCAGCTAGCAGCGGCTGCCTTCACCACCG
TGTCGGGCCGTGTGGTGGAGGACCCCAAGGGCGAGCTGCAGAAGGTCCTG
ACCCCCTCTCCCAAGGATGAGGCGCGACGAGCACGCGTGGGGAAGCTCTT
GGAGGCGGCGGGGTTGACATATACTGGGGAGGCTATCTTCCCTTCCAACC
GGTACTACGGCGGGGCTGTCTACAAGGACTTCACCAAGGCAGTCGGCGTC
GAGCCCGCGGACCAGGTGGGAGCAGCAGCACTGATCGTAGCGGCGGGCAA
CAGGGGCTACAAACCATTCCACAAGAAGGTGGGCACGTTTCTTGACGTCC
TCCACTCCCTGACCAAGAGCATCCTCTCGGAAAAGGACGAGTTCGAGGGC
CCCGACCTTGCTAAGGTATTCACCGGCCTAGTCAAGCTCAACTACGAGGG
CTCCCCCAAGCAGCACATTCGCGATCTTGTCCGTGAAATATCTGCCCGTA
TCGAGGCCGGCGAGCTGAATGGCGCACAGATCGCCGCTGTCCTGGACAGC
TCGGCTTCTTTCTGGTTCACTCCTGAGGACTCTTTTTTCACCGCCATCGC
CCTCAAGCTCTCTCCCTCCGACGTCTCGGACCAGGACAAGGCTCGCGTGA
AGGACGCCCTGGCTCGCTTTACCTCCCGCCTTCCCCATCTAAAGGAGGAG
GGCGTGCTCCCCGCGGCCTTCCTCTCCTCCTTCTAAAGGGAGGGAGGGAA
AGGAGGGAGGGAGGATTGTATGGGTGTGTGGAGGTGAAAGACGCACCGAG
AGAAGACACGGTATATGATGGGGGGTTAGGGAGGATGCAAGGAAGGGGGG
GAGGG
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protein sequence of NO19G02630.1

>NO19G02630.1-protein ID=NO19G02630.1-protein|Name=NO19G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MVKSSLLVLALAAAAQGFLLPVPQQRTQTTSTQLAAAAFTTVSGRVVEDP
KGELQKVLTPSPKDEARRARVGKLLEAAGLTYTGEAIFPSNRYYGGAVYK
DFTKAVGVEPADQVGAAALIVAAGNRGYKPFHKKVGTFLDVLHSLTKSIL
SEKDEFEGPDLAKVFTGLVKLNYEGSPKQHIRDLVREISARIEAGELNGA
QIAAVLDSSASFWFTPEDSFFTAIALKLSPSDVSDQDKARVKDALARFTS
RLPHLKEEGVLPAAFLSSF*
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mRNA from alignment at chr19:788671..791439+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02630.1 ID=NO19G02630.1|Name=NO19G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2769bp|location=Sequence derived from alignment at chr19:788671..791439+ (Nannochloropsis oceanica)
CTCGTACATACGCAGGGCCCCTGGTCTCCTGCTTTCCTCTGCCGCCGTGG
TGTTTGACTCGGTTACTGAACCACGGACTGTCCCCTGGGAAGGTTTCGCG
AGACACATCTCATGGGGTTTCGAAAACCTTTGTTGACGTGGGCGTTTTCA
AAGATAGGGGATCGGTAAGACTCTTTTCTTGCCTCCGGCTCCCTTCTTGC
TGTTGCTGTTGGGCTCTGTGTGGTGTGGCTGCCACTTGTTGTTTGTTGTC
TTTTTACCTCGCTGGCCCCGAGCCCAATTTGGTGTCCTCCTTCCTGCTGT
TGGACTCTGCATTATAATCTACACAGGTTGGCTGCGTAGAGACGAGGGGG
TAGACAGCAGGGGAGGCTGGGAAGCTCTGGATGGGTGGAGGAGGAGGATA
CACACAGCCATCTCGCATGACGTGAGACCAGCTTATTACTTCCAAATCCA
GGAGCAACCAGACTGGCAGCCGCATCCGCGTCATGAGCATTGTCGACATC
AGGAGTACCATATGCATACATGCTGACTGATCGGTCGCTGGACATTGATA
CGGTCAAAATCCAACCAAGCGACATAGCGCCGATCCCCTCATATCATCCC
CTCCCCTCACCCCAAACAGCAGCAACATGGTCAAGAGCAGCCTCCTCGTC
CTGGCCCTCGCGGCCGCAGCCCAAGGCTTCCTCCTCCCCGTCCCGCAGCA
AAGAACACAGACCACCAGCACCCAGCTAGCAGCGGCTGCCTTCACCACCG
TGTCGGGCCGTGTGGTGGAGGACCCCAAGGGCGAGCTGCAGAAGGTCCTG
ACCCCCTCTCCCAAGGATGAGGCGCGACGAGCACGCGTGGGGAAGCTCTT
GGAGGCGGCGGGGTTGACATATACTGGGGAGGCTATCTTCCCTTCCAACC
GGTACGTCGCGTTTGACTAGTGGCCCTCCCTCAGTCCCTCCTTCCCTCCC
TCCTTCCCTCCTCCCTGATATTTAGCATTGTGGCTTGCCGTCTTGGATCG
ATCCCATTTCCATGACATGTGGTATATAGCATCACTGTCTCACAAGTGTC
TTCGTTCTCTCTCCTGTCGATCTTCCTTCCCTTGCCTCCCTTCTGTTCTT
TCACCTCATTTTGGCCTAATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTTGCAGGTACTACGGCGGGGCTGTCTACAAGGACTTCACCAAGGCAGTC
GGCGTCGAGCCCGCGGACCAGGTAGGGATAGAGGAAGGGAGGGACGGAGG
AACCGATATAGATATATGTATATATGCACTTCTTCAGACATAAATATATG
TATATATCTGTGGGGATGAGGTCGACGGGGCCTGAGCGTCGGCTGGACCT
CGTCATCCTACGCCATCCTCTATTTCCTTCGTTACACCTCTCTGAGTCTC
TACCACACCACTCCCTCCCTCCTCGCTTGGGTTTCCCTCAGGTGGGAGCA
GCAGCACTGATCGTAGCGGCGGGCAACAGGGGCTACAAACCATTCCACAA
GAAGGTGCGCCCCTCCCTCCCTCCCTCCCTTCTTGGATTCAGCTCCCTCA
CCCGCTTTCCACTCTTTCTCTTCACTCACTCCCTCCCTCCCGCCCTACCT
CCCTCCATTCTCAGGTGGGCACGTTTCTTGACGTCCTCCACTCCCTGACC
AAGAGCATCCTCTCGGAAAAGGACGAGTTCGAGGGTACGTACTCTCCCTC
CCTCCCTCCCTCCCTCCCCCCCCCCGTTCCGTCACACCACTTGCCCCTCG
CCCGTCACTCCCCTCATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCCCTCTGCCAGGCCCCGACCTTGCTAAGGTATTCACCGGCC
TAGTCAAGCTCAACTACGAGGGCTCCCCCAAGCAGCACATTCGGTACGTC
TTTCCCTCCCTCCCGCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCTTCCA
TCCGTTTGGACTTACACTTGAATCCTCTCCCTGCCTCCCTCCCTCCCTCC
CTCCCTCCCTTCACAGCGATCTTGTCCGTGAAATATCTGCCCGTATCGAG
GCCGGCGAGCTGAATGGCGCACAGGTATCTCCCTCCCTCCCTCCCTCCCT
CCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTTCCTCCCTCCTTTCTTC
CTTTTCTCCCCTCGCTTTTTCCTTCCCTTTGGCCTTTCTCCATCCCCCTC
CTTCCTTCTCCTCCTCAGTGTGACCGACTTCCTGGACATTCACACCTTTC
TCCCCCCTTCCCTCCCCCCTCCCTCCCCCTCGTCCCTCCCCCCCTCCTTT
AGATCGCCGCTGTCCTGGACAGCTCGGCTTCTTTCTGGTTCACTCCTGAG
GACTCTTTTTTCACCGCCATCGCCCTCAAGCTCTCTCCCTCCGACGTCTC
GGACCAGGTGCGTCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCC
CTCCCTCCTTCGTGTCTCTTTTCTTGCCCTCGGCGCCCACTCACTCCCCC
CCCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCAGGA
CAAGGCTCGCGTGAAGGACGCCCTGGCTCGCTTTACCTCCCGCCTTCCCC
ATCTAAAGGAGGAGGGCGTGCTCCCCGCGGCCTTCCTCTCCTCCTTCTAA
AGGGAGGGAGGGAAAGGAGGGAGGGAGGATTGTATGGGTGTGTGGAGGTG
AAAGACGCACCGAGAGAAGACACGGTATATGATGGGGGGTTAGGGAGGAT
GCAAGGAAGGGGGGGAGGG
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Coding sequence (CDS) from alignment at chr19:788671..791439+

>NO19G02630.1 ID=NO19G02630.1|Name=NO19G02630.1|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at chr19:788671..791439+ (Nannochloropsis oceanica)
ATGGTCAAGAGCAGCCTCCTCGTCCTGGCCCTCGCGGCCGCAGCCCAAGG
CTTCCTCCTCCCCGTCCCGCAGCAAAGAACACAGACCACCAGCACCCAGC
TAGCAGCGGCTGCCTTCACCACCGTGTCGGGCCGTGTGGTGGAGGACCCC
AAGGGCGAGCTGCAGAAGGTCCTGACCCCCTCTCCCAAGGATGAGGCGCG
ACGAGCACGCGTGGGGAAGCTCTTGGAGGCGGCGGGGTTGACATATACTG
GGGAGGCTATCTTCCCTTCCAACCGGTACTACGGCGGGGCTGTCTACAAG
GACTTCACCAAGGCAGTCGGCGTCGAGCCCGCGGACCAGGTGGGAGCAGC
AGCACTGATCGTAGCGGCGGGCAACAGGGGCTACAAACCATTCCACAAGA
AGGTGGGCACGTTTCTTGACGTCCTCCACTCCCTGACCAAGAGCATCCTC
TCGGAAAAGGACGAGTTCGAGGGCCCCGACCTTGCTAAGGTATTCACCGG
CCTAGTCAAGCTCAACTACGAGGGCTCCCCCAAGCAGCACATTCGCGATC
TTGTCCGTGAAATATCTGCCCGTATCGAGGCCGGCGAGCTGAATGGCGCA
CAGATCGCCGCTGTCCTGGACAGCTCGGCTTCTTTCTGGTTCACTCCTGA
GGACTCTTTTTTCACCGCCATCGCCCTCAAGCTCTCTCCCTCCGACGTCT
CGGACCAGGACAAGGCTCGCGTGAAGGACGCCCTGGCTCGCTTTACCTCC
CGCCTTCCCCATCTAAAGGAGGAGGGCGTGCTCCCCGCGGCCTTCCTCTC
CTCCTTCTAA
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Synonyms
Publications