NO19G02610, NO19G02610 (gene) Nannochloropsis oceanica

Overview
NameNO19G02610
Unique NameNO19G02610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3694
Alignment locationchr19:778177..781870 -

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Properties
Property NameValue
DescriptionWd sam and u-box domain-containing protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:778177..781870 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
GO:0016567protein ubiquitination
Vocabulary: INTERPRO
TermDefinition
IPR003613Ubox_domain
Homology
[Close]
BLAST of NO19G02610 vs. NCBI_GenBank
Match: GBG34256.1 (U-box domain-containing protein 36 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 77.0 bits (188), Expect = 1.700e-10
Identity = 42/110 (38.18%), Postives = 65/110 (59.09%), Query Frame = 0 
Query:    1 MSKVKRDS-KSSSRRAK-----FSCPIMETIMEDPVIAMDGYSYERKAIEEWFRRGHRASPVTRRDVESTLIIPNIRLKELAR--------AKKLLPAKPTDYTPYMVRA 97
            MS+ K++S ++++ R       F CPI   +MEDPV+  DGY++ER AIE+WF+ GH  SPVT  ++E T ++ NI L+            A K  PA P++++   V+A
Sbjct:  439 MSQAKQESIRAAAERLSIDVDAFVCPITSQLMEDPVVTADGYAFERAAIEKWFQEGHTVSPVTGNELEHTNVVANINLRNAIEKFVQKAFGAPKTAPALPSEHSNADVQA 548
[Close]
BLAST of NO19G02610 vs. NCBI_GenBank
Match: XP_003061457.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH54087.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 75.1 bits (183), Expect = 6.300e-10
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 0 
Query:   17 FSCPIMETIMEDPVIAMDGYSYERKAIEEWFRRGHRASPVTRRDVESTLIIPNIRLKELARA 79
            F CPI +++M DPVIA+DG++YER+AIEEWF RG   SPVT   V ST +I N  L+ +  A
Sbjct: 5440 FHCPITQSVMRDPVIAVDGHTYERRAIEEWFSRGRSTSPVTNLRVSSTTLIANHALRGVIAA 5501
[Close]
BLAST of NO19G02610 vs. NCBI_GenBank
Match: XP_009139308.1 (PREDICTED: U-box domain-containing protein 36-like [Brassica rapa] >XP_013745178.1 U-box domain-containing protein 36-like [Brassica napus])

HSP 1 Score: 74.7 bits (182), Expect = 8.300e-10
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 0 
Query:    1 MSKVKRDSKSSSRRAKFSCPIMETIMEDPVIAMDGYSYERKAIEEWFRRGHRASPVTRRDVESTLIIPNIRLK 74
            +SK+K + K+      F CPI + +MEDP +A DG++YE +AI  WF RGH  SP+T + +  T ++PN+ L+
Sbjct:  313 VSKLKSNRKNHGPPQYFICPITQDVMEDPHVAADGFTYEGEAISSWFERGHETSPMTNKSLPHTSLVPNLALR 385
[Close]
BLAST of NO19G02610 vs. NCBI_GenBank
Match: WP_012472991.1 (hypothetical protein [Candidatus Amoebophilus asiaticus] >ACE06223.1 hypothetical protein Aasi_0852 [Candidatus Amoebophilus asiaticus 5a2])

HSP 1 Score: 73.6 bits (179), Expect = 1.800e-9
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 0 
Query:   19 CPIMETIMEDPVIAMDGYSYERKAIEEWFRRGHRASPVTRRDVESTLIIPNIRLKELARAKKLLP---AKPT 88
            CPI   +ME+PVIA DG++YER AIE WF  G R SPVT   V ST +IPN  ++ L ++ K      AKPT
Sbjct:  180 CPITHELMEEPVIARDGHTYERTAIERWFSMGKRTSPVTGAKVSSTKLIPNYAIRSLIKSLKTRNSSIAKPT 251
[Close]
BLAST of NO19G02610 vs. NCBI_GenBank
Match: XP_018466458.1 (PREDICTED: U-box domain-containing protein 36-like [Raphanus sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.800e-9
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 0 
Query:    2 SKVKRDSKSSSRRAKFSCPIMETIMEDPVIAMDGYSYERKAIEEWFRRGHRASPVTRRDVESTLIIPNIRLK 74
            SK+K + K+      F CPI + +MEDP +A DG++YE +AI  WF RGH  SP+T + +  T ++PN+ L+
Sbjct:  253 SKLKSNRKNHGPPQYFICPITQDVMEDPHVAADGFTYEGEAISSWFERGHETSPMTNKMLPHTTLVPNLALR 324
[Close]
BLAST of NO19G02610 vs. NCBI_GenBank
Match: XP_018504787.1 (PREDICTED: putative U-box domain-containing protein 50 [Pyrus x bretschneideri])

HSP 1 Score: 73.6 bits (179), Expect = 1.800e-9
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 0 
Query:   17 FSCPIMETIMEDPVIAMDGYSYERKAIEEWFRRGHRASPVTRRDVESTLIIPNIRLKELAR 78
            F CPI + +M+DP IA DG+SYE++AIEEW R GH  SP+T   +E  ++IPN  L+ L +
Sbjct:  729 FLCPIFQEVMKDPHIAADGFSYEKEAIEEWLRLGHDTSPMTNLKLEHNIVIPNHTLRSLTQ 789
[Close]
BLAST of NO19G02610 vs. NCBI_GenBank
Match: XP_012675146.1 (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1-like [Clupea harengus])

HSP 1 Score: 73.2 bits (178), Expect = 2.400e-9
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 0 
Query:    1 MSKVKRDSKSSSRRAKFSCPIMETIMEDPVIAMDGYSYERKAIEEWFRRGHRASPVTRRDVESTLIIPNIRLK 74
            + ++K +S  +    ++ CPI + +M+DPVIA DGYSYER+AI+ W R  +R+SP+T   +++TL+ PN  LK
Sbjct:  409 IEELKMESMCTGVPEEYLCPITQELMKDPVIAADGYSYEREAIQSWIRTKNRSSPMTNLPLQTTLLTPNYTLK 481
[Close]
BLAST of NO19G02610 vs. NCBI_GenBank
Match: EWM21554.1 (wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 73.2 bits (178), Expect = 2.400e-9
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 0 
Query:   19 CPIMETIMEDPVIAMDGYSYERKAIEEWFRRGHRASPVTRRDVESTLIIPNIRLKELARAKKLLPAK 86
            CPI   IM DPV+  DGYSYER++IE WF RGHR SP+T   + S  +  N+ LK L+RA + L A+
Sbjct:   31 CPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKNLSRALEPLSAE 97
[Close]
BLAST of NO19G02610 vs. NCBI_GenBank
Match: PRD23410.1 (Wdsub1 [Nephila clavipes])

HSP 1 Score: 72.8 bits (177), Expect = 3.100e-9
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 0 
Query:   16 KFSCPIMETIMEDPVIAMDGYSYERKAIEEWFRRGHRASPVTRRDVESTLIIPNIRLKELARAKK 81
            +F CPI + +M DPV+A DGYSYER+AIEEW ++G   SP+T   +   +IIPN  L +L +  K
Sbjct:  428 EFCCPITQEVMRDPVVAADGYSYERQAIEEWLQKGKDTSPMTNETLAHKIIIPNRLLVQLIQKYK 492
[Close]
BLAST of NO19G02610 vs. NCBI_GenBank
Match: XP_008402654.1 (PREDICTED: WD repeat, SAM and U-box domain-containing protein 1-like [Poecilia reticulata] >XP_008402655.1 PREDICTED: WD repeat, SAM and U-box domain-containing protein 1-like [Poecilia reticulata] >XP_008402657.1 PREDICTED: WD repeat, SAM and U-box domain-containing protein 1-like [Poecilia reticulata] >XP_008402658.1 PREDICTED: WD repeat, SAM and U-box domain-containing protein 1-like [Poecilia reticulata] >XP_008402659.1 PREDICTED: WD repeat, SAM and U-box domain-containing protein 1-like [Poecilia reticulata] >XP_008402660.1 PREDICTED: WD repeat, SAM and U-box domain-containing protein 1-like [Poecilia reticulata])

HSP 1 Score: 72.4 bits (176), Expect = 4.100e-9
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 0 
Query:    1 MSKVKRDSKSSSRRAKFSCPIMETIMEDPVIAMDGYSYERKAIEEWFRRGHRASPVTRRDVESTLIIPNIRLK 74
            + ++K DS SS    +F CPI   +M +PVIA DGYSYER+AIE W    +R+SP+T   + +TL+ PN  LK
Sbjct:  394 VEELKSDSMSSGVPDEFLCPITRELMREPVIAADGYSYEREAIENWIHTKNRSSPMTNLPLLTTLLTPNHTLK 466
The following BLAST results are available for this feature:
BLAST of NO19G02610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GBG34256.11.700e-1038.18U-box domain-containing protein 36 [Aurantiochytri... [more]
XP_003061457.16.300e-1054.84predicted protein [Micromonas pusilla CCMP1545] >E... [more]
XP_009139308.18.300e-1042.47PREDICTED: U-box domain-containing protein 36-like... [more]
WP_012472991.11.800e-951.39hypothetical protein [Candidatus Amoebophilus asia... [more]
XP_018466458.11.800e-943.06PREDICTED: U-box domain-containing protein 36-like... [more]
XP_018504787.11.800e-950.82PREDICTED: putative U-box domain-containing protei... [more]
XP_012675146.12.400e-943.84PREDICTED: WD repeat, SAM and U-box domain-contain... [more]
EWM21554.12.400e-952.24wd sam and u-box domain-containing protein 1 [Nann... [more]
PRD23410.13.100e-949.23Wdsub1 [Nephila clavipes][more]
XP_008402654.14.100e-947.95PREDICTED: WD repeat, SAM and U-box domain-contain... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR099ncniR099Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02610.1NO19G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|411923gene_10960Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02610.1NO19G02610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02610 ID=NO19G02610|Name=NO19G02610|organism=Nannochloropsis oceanica|type=gene|length=3694bp
TGGTCCTTCGTCGTGTCTTGTTTCTTTCGTATGCGTCCTCAGGGAAGGTC
TTTTTATGGCACGTGCTAAAGCAGGTTGATAAAGTGTCATGCACAGCATC
ACACTCCTATGAACCACCTGGAGGCTTGTGCGGCCCATGTATGCCTTTCC
ACATTCTTTCGCGGTGGGTGGAATCTCGTCCTCGCGATAGCTTTCACTGG
AGGCTCTTTGCACGGTGATCTTCGGCCATAACCCCCGTCCACGTGTCATT
TCTTCAAGCACTGCGTTTGTATTCCTTTCCATAAAATTGCACCGTAATTT
TCCACGAAGTTTTTCCTTGCCGAGAAGCCGCCTTCAACTTTTCCTGCGAC
TTGTGAAACGCCCAGGGCGATGTTCCCTCCGACGTAGTCTACGAGTCACC
TTTCGTCAAGGCAAACAAATGGCAGCTCACTTCTCCCATCAACCTGATTA
TGATCGCCCTTGACGTGCAGATGTGTGGGAGGCTCTCCTAGCATACACAG
GAGTGAAAGTCAATTTGCTCGGGGTGTCATGGTCTGTCAAGAACCGATGT
TCACCGGTCATGATGGGCCGCTGCCCAATAGTCGCGTCGTCATATTAATA
AGACCTTCACCTCCCTCAGGGGGTAGGGCGAACACAAAGACACACACGCC
AGCCAAATGTGCAGTGCGTTGGCAGTGCCACTTGTCGAGCAACTTTGTAA
TTCTTTTCTCAGCCATACCCAGCCCTTTGACTTTTGTGCCGTCCTCGGAG
ACAGGGAACTCTCAAGGTTACGTTGAGAGTTTGTTCAAACCCGCTGAGGA
ACAGTCACAGTTCCTTCGGGCTCTTTGCCTAAAATGTCATCTATTCTTTT
TCTCATTCCCTTCCAAGCCATGGCTATATTGTCCACTACCACACGTTTTC
TATGTCTAACCTGTTCTTCCCTTTCTCTCCTCGAAAAAGTTGCGCGCGGC
AAACACAGGGCCTCTTCCCCCTTTGTACCAGCGAACTCCTCGACCTGGTC
ACACAGAAATCGGACCTGAAAGGAGCAGCTTAGACCATGTCGAAGGTAAA
GAGGGATTCGAAATCTAGCTCTCGGAGGGCGAAATTTAGCTGCCCCATCA
TGGAGACAATCATGGAAGgtacgtgagttatgttggctctccgtccctcc
ctgccttaaaaaatatacgctttttacactctatccttacctctctccct
ccccaagACCCCGTCATTGCCATGGATGGCTACTCCTATGAGCGGAAGGC
CATCGAAGAATGGTTTCGACGTGGCCACCGTGCTTCTCCCGTCACCCGCC
GAGATGTCGAGTCCACGTTAATCATCCCCAATATTCGCCTCAAGGAGCTG
GCGCGGgtacgaaccttccttccctccccttccttccttcctttttcctc
tctttattggatgtattatatgtctcgttcatcagcgcctacttcctcat
tctctctatttcctgagacattaatttcaattgcccatgtctcatctctc
cccgcgctccctacctctctcttccccctccctccagGCGAAAAAACTGC
TGCCCGCCAAGCCCACTGACTACACTCCCTACATGGTGAGAGCAGCTGTC
TCAAGATTCCAGCAGAAGTTGGGGATTCGCCACCACTCTCTCGATCTTTC
GATGGAAGGGAGGGAGGGGAGGAAGGAGGAGGAGAAGAAGGAGGAGGAGG
AGGGGGAGGGCGTTGGTAGTAGCAGCCATCACCTCATTAGTAGCAACAAT
ACGGTGGAAGATAAGGAGAAGAAGGAAGAGGAGGTGGTGGAGGCGGAGGA
GGAAAAGGTGGTAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCAGTTGCAGAG
GCGGTTGCAAAGGCGGTTGCAAAGGCGACTCCGAAGGCTGAAGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGGGGAAGAGGATGAGGAGG
AGTTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGCGGAGGAGGCGGAGGA
GTTGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGG
AGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAG
gtagaggtagaggaagtagaagtagaggctaaggcggagacggaggaaga
ggtagacgaggaggtggaggtggaggcggagatggcggtggaggaggagg
ttaaggatgcggagccggaggaagaggaggcggaggcggagttggaggtt
gaggctgaggtggcggtggagatggaggaggaggttaaggaggcggagac
ggagggagaggagGCGGAGGCGGAGGCGGAGGCGGAGGTGGCGGTAGAGG
TGGAGGCAGAGGAGAAGAAGAAGTTGGAGAAGGAGGAGGAGGTGATGGTG
GAGAAGAAGAAAGAGGAGCAGAAGAAGATTGCAGTGGAGGAGGTGGAGGA
AGAGCACCGCTTTGTTTCAGTGAAGGAGCGTGTAGCAGCACTACAGCAAA
AGCGTCAAAGCCTTTCTATCTCCTCTTCCTCTACCGCCATCCGCGCCTTC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCG
CCCTTCCGCTGGAAAGAAAGAAGCGCAAGTGGTGGAAGACGCCCCCCGCT
CAGTCGCCTCGATCATTGCCAGCCTCTCCCGCCCTCCCTCCGGCCCTCCC
CCTCGACGCACCCCCACGCCCTCCAAATTCCTGGTCCCGACAGCCTTCGC
CTCCCAGGCGTCGAAGGAGAAAGGGAAGAAAGGAGGATTGTAAGGGCAGT
AAGAGGAGGAGGGAGGGGAGCAGATGAGGGGCTGACCTTGCCTTTCATCA
AATACTCAGCGGTGGTGATCGAGCAAAGGCGAACCCAAAGCGGCACAAAG
CCGCCGTTTGAAGACAAGCCAATAAGGAAGTGGAGGAGATAGTAAGCGGT
GAGAGCTGTGGTAGGCGCGCAGTGTAGGAAGGAGGTATATCATTGGAAGG
AAGAACACGGAGACTTGTGTGTCAAGAGGCTGAATTTTATAGATTTTATG
AGTCGAGGGTCATGTAATTTTAATGGGAGAGATACAATAGAATGGACCAA
GGGAATGCTGCAGATCGCCAACGGGTGCAGATCGCAGTAGCTGGTACTAC
ATACACTGCCATGAGAGAGGGCATCAGCCGGGAGTCATCACATAGGTATT
TGCGAGCAAGACGAAGGGACGGAAGATGGAGTACCAATATCTTATCACCT
GGTAACCGTAGGAAGCAAGGGAGGGAGGAAGCATTTACATTCAATCAATA
GCACGACAGGCGAGATATCCACCAAGGAGGATTTGAAAAAAATGACACAG
AAACAGCGAAGGAGCAAGGAGGGGAATAGAAAGGTCATCATTTATTAAGG
TAGACTGCAGACATGTGCAGCATACGTACACATATAGCAGTGTTAAATTT
TATTTATTTATGTATTGACATTTTATATTTCAAAGACTTACAGTCAGGAG
CAGACGACAAATTGATGGAAAGAGATAGAGTAAAAAGAAGACAACTCTCT
GGAAAGAGACACCTATCATGTGATTGCTGTTCTCGGTTCCCTCT
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protein sequence of NO19G02610.1

>NO19G02610.1-protein ID=NO19G02610.1-protein|Name=NO19G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp
MSKVKRDSKSSSRRAKFSCPIMETIMEDPVIAMDGYSYERKAIEEWFRRG
HRASPVTRRDVESTLIIPNIRLKELARAKKLLPAKPTDYTPYMVRAAVSR
FQQKLGIRHHSLDLSMEGREGRKEEEKKEEEEGEGVGSSSHHLISSNNTV
EDKEKKEEEVVEAEEEKVVVEEEEEEEEEEEEEEEEEEEEEEEEAVAEAV
AKAVAKATPKAEEEEEEEEEEEEEEGEEDEEELEEEEEEEEEEEEEEEEE
EEEEEEEEVAEEAEELAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAE
AEAEAEVAVEVEAEEKKKLEKEEEVMVEKKKEEQKKIAVEEVEEEHRFVS
VKERVAALQQKRQSLSISSSSTAIRAFSSSSSSSSSSSSSSSSRPSAGKK
EAQVVEDAPRSVASIIASLSRPPSGPPPRRTPTPSKFLVPTAFASQASKE
KGKKGGL*
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Synonyms
Publications