NO19G02610.1, NO19G02610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02610.1
Unique NameNO19G02610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3211
Alignment locationchr19:778177..781870 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:778177..781870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02610.1 vs.
Match: EWM21554.1 (wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 79.0 bits (193), Expect = 4.400e-11
Identity = 53/123 (43.09%), Postives = 71/123 (57.72%), Query Frame = 0 
Query:   19 CPIMETIMEDPVIAMDGYSYERKAIEEWFRRGHRASPVTRRDVESTLIIPNIRLKELARAKKLLPAKPTDYTPYMVRAAVSRFQQKLGIRHHSLDLSMEGREGRKEEEKKEEEE-GEGVGSSS 141
            CPI   IM DPV+  DGYSYER++IE WF RGHR SP+T   + S  +  N+ LK L+RA + L A+  +      +A      Q+ G+    +  S EG    +EEE++EEEE GE  GS S
Sbjct:   31 CPISRCIMRDPVLTCDGYSYERESIEAWFARGHRTSPMTGLVLPSRTLWSNLVLKNLSRALEPLSAEEEE----RGKAPRESEGQQAGV---WVGHSPEGTSSEEEEEEEEEEEDGEESGSDS 146
The following BLAST results are available for this feature:
BLAST of NO19G02610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21554.14.400e-1143.09wd sam and u-box domain-containing protein 1 [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02610NO19G02610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02610.1NO19G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02610.1.cds1NO19G02610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02610.1.cds2NO19G02610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02610.1.cds3NO19G02610.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02610.1.cds4NO19G02610.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02610.1 ID=NO19G02610.1|Name=NO19G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=3211bp
TGGTCCTTCGTCGTGTCTTGTTTCTTTCGTATGCGTCCTCAGGGAAGGTC
TTTTTATGGCACGTGCTAAAGCAGGTTGATAAAGTGTCATGCACAGCATC
ACACTCCTATGAACCACCTGGAGGCTTGTGCGGCCCATGTATGCCTTTCC
ACATTCTTTCGCGGTGGGTGGAATCTCGTCCTCGCGATAGCTTTCACTGG
AGGCTCTTTGCACGGTGATCTTCGGCCATAACCCCCGTCCACGTGTCATT
TCTTCAAGCACTGCGTTTGTATTCCTTTCCATAAAATTGCACCGTAATTT
TCCACGAAGTTTTTCCTTGCCGAGAAGCCGCCTTCAACTTTTCCTGCGAC
TTGTGAAACGCCCAGGGCGATGTTCCCTCCGACGTAGTCTACGAGTCACC
TTTCGTCAAGGCAAACAAATGGCAGCTCACTTCTCCCATCAACCTGATTA
TGATCGCCCTTGACGTGCAGATGTGTGGGAGGCTCTCCTAGCATACACAG
GAGTGAAAGTCAATTTGCTCGGGGTGTCATGGTCTGTCAAGAACCGATGT
TCACCGGTCATGATGGGCCGCTGCCCAATAGTCGCGTCGTCATATTAATA
AGACCTTCACCTCCCTCAGGGGGTAGGGCGAACACAAAGACACACACGCC
AGCCAAATGTGCAGTGCGTTGGCAGTGCCACTTGTCGAGCAACTTTGTAA
TTCTTTTCTCAGCCATACCCAGCCCTTTGACTTTTGTGCCGTCCTCGGAG
ACAGGGAACTCTCAAGGTTACGTTGAGAGTTTGTTCAAACCCGCTGAGGA
ACAGTCACAGTTCCTTCGGGCTCTTTGCCTAAAATGTCATCTATTCTTTT
TCTCATTCCCTTCCAAGCCATGGCTATATTGTCCACTACCACACGTTTTC
TATGTCTAACCTGTTCTTCCCTTTCTCTCCTCGAAAAAGTTGCGCGCGGC
AAACACAGGGCCTCTTCCCCCTTTGTACCAGCGAACTCCTCGACCTGGTC
ACACAGAAATCGGACCTGAAAGGAGCAGCTTAGACCATGTCGAAGGTAAA
GAGGGATTCGAAATCTAGCTCTCGGAGGGCGAAATTTAGCTGCCCCATCA
TGGAGACAATCATGGAAGACCCCGTCATTGCCATGGATGGCTACTCCTAT
GAGCGGAAGGCCATCGAAGAATGGTTTCGACGTGGCCACCGTGCTTCTCC
CGTCACCCGCCGAGATGTCGAGTCCACGTTAATCATCCCCAATATTCGCC
TCAAGGAGCTGGCGCGGGCGAAAAAACTGCTGCCCGCCAAGCCCACTGAC
TACACTCCCTACATGGTGAGAGCAGCTGTCTCAAGATTCCAGCAGAAGTT
GGGGATTCGCCACCACTCTCTCGATCTTTCGATGGAAGGGAGGGAGGGGA
GGAAGGAGGAGGAGAAGAAGGAGGAGGAGGAGGGGGAGGGCGTTGGTAGT
AGCAGCCATCACCTCATTAGTAGCAACAATACGGTGGAAGATAAGGAGAA
GAAGGAAGAGGAGGTGGTGGAGGCGGAGGAGGAAAAGGTGGTAGTGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGCAGTTGCAGAGGCGGTTGCAAAGGCGGTTGC
AAAGGCGACTCCGAAGGCTGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AAGAGGAGGAGGGGGAAGAGGATGAGGAGGAGTTGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGTGGCGGAGGAGGCGGAGGAGTTGGCGGAGGCGGAGGCGG
AGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAG
GCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGC
GGAGGTGGCGGTAGAGGTGGAGGCAGAGGAGAAGAAGAAGTTGGAGAAGG
AGGAGGAGGTGATGGTGGAGAAGAAGAAAGAGGAGCAGAAGAAGATTGCA
GTGGAGGAGGTGGAGGAAGAGCACCGCTTTGTTTCAGTGAAGGAGCGTGT
AGCAGCACTACAGCAAAAGCGTCAAAGCCTTTCTATCTCCTCTTCCTCTA
CCGCCATCCGCGCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCCGCCCTTCCGCTGGAAAGAAAGAAGCGCAAGTGGT
GGAAGACGCCCCCCGCTCAGTCGCCTCGATCATTGCCAGCCTCTCCCGCC
CTCCCTCCGGCCCTCCCCCTCGACGCACCCCCACGCCCTCCAAATTCCTG
GTCCCGACAGCCTTCGCCTCCCAGGCGTCGAAGGAGAAAGGGAAGAAAGG
AGGATTGTAAGGGCAGTAAGAGGAGGAGGGAGGGGAGCAGATGAGGGGCT
GACCTTGCCTTTCATCAAATACTCAGCGGTGGTGATCGAGCAAAGGCGAA
CCCAAAGCGGCACAAAGCCGCCGTTTGAAGACAAGCCAATAAGGAAGTGG
AGGAGATAGTAAGCGGTGAGAGCTGTGGTAGGCGCGCAGTGTAGGAAGGA
GGTATATCATTGGAAGGAAGAACACGGAGACTTGTGTGTCAAGAGGCTGA
ATTTTATAGATTTTATGAGTCGAGGGTCATGTAATTTTAATGGGAGAGAT
ACAATAGAATGGACCAAGGGAATGCTGCAGATCGCCAACGGGTGCAGATC
GCAGTAGCTGGTACTACATACACTGCCATGAGAGAGGGCATCAGCCGGGA
GTCATCACATAGGTATTTGCGAGCAAGACGAAGGGACGGAAGATGGAGTA
CCAATATCTTATCACCTGGTAACCGTAGGAAGCAAGGGAGGGAGGAAGCA
TTTACATTCAATCAATAGCACGACAGGCGAGATATCCACCAAGGAGGATT
TGAAAAAAATGACACAGAAACAGCGAAGGAGCAAGGAGGGGAATAGAAAG
GTCATCATTTATTAAGGTAGACTGCAGACATGTGCAGCATACGTACACAT
ATAGCAGTGTTAAATTTTATTTATTTATGTATTGACATTTTATATTTCAA
AGACTTACAGTCAGGAGCAGACGACAAATTGATGGAAAGAGATAGAGTAA
AAAGAAGACAACTCTCTGGAAAGAGACACCTATCATGTGATTGCTGTTCT
CGGTTCCCTCT
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protein sequence of NO19G02610.1

>NO19G02610.1-protein ID=NO19G02610.1-protein|Name=NO19G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp
MSKVKRDSKSSSRRAKFSCPIMETIMEDPVIAMDGYSYERKAIEEWFRRG
HRASPVTRRDVESTLIIPNIRLKELARAKKLLPAKPTDYTPYMVRAAVSR
FQQKLGIRHHSLDLSMEGREGRKEEEKKEEEEGEGVGSSSHHLISSNNTV
EDKEKKEEEVVEAEEEKVVVEEEEEEEEEEEEEEEEEEEEEEEEAVAEAV
AKAVAKATPKAEEEEEEEEEEEEEEGEEDEEELEEEEEEEEEEEEEEEEE
EEEEEEEEVAEEAEELAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAEAE
AEAEAEVAVEVEAEEKKKLEKEEEVMVEKKKEEQKKIAVEEVEEEHRFVS
VKERVAALQQKRQSLSISSSSTAIRAFSSSSSSSSSSSSSSSSRPSAGKK
EAQVVEDAPRSVASIIASLSRPPSGPPPRRTPTPSKFLVPTAFASQASKE
KGKKGGL*
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mRNA from alignment at chr19:778177..781870-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02610.1 ID=NO19G02610.1|Name=NO19G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=3694bp|location=Sequence derived from alignment at chr19:778177..781870- (Nannochloropsis oceanica)
TGGTCCTTCGTCGTGTCTTGTTTCTTTCGTATGCGTCCTCAGGGAAGGTC
TTTTTATGGCACGTGCTAAAGCAGGTTGATAAAGTGTCATGCACAGCATC
ACACTCCTATGAACCACCTGGAGGCTTGTGCGGCCCATGTATGCCTTTCC
ACATTCTTTCGCGGTGGGTGGAATCTCGTCCTCGCGATAGCTTTCACTGG
AGGCTCTTTGCACGGTGATCTTCGGCCATAACCCCCGTCCACGTGTCATT
TCTTCAAGCACTGCGTTTGTATTCCTTTCCATAAAATTGCACCGTAATTT
TCCACGAAGTTTTTCCTTGCCGAGAAGCCGCCTTCAACTTTTCCTGCGAC
TTGTGAAACGCCCAGGGCGATGTTCCCTCCGACGTAGTCTACGAGTCACC
TTTCGTCAAGGCAAACAAATGGCAGCTCACTTCTCCCATCAACCTGATTA
TGATCGCCCTTGACGTGCAGATGTGTGGGAGGCTCTCCTAGCATACACAG
GAGTGAAAGTCAATTTGCTCGGGGTGTCATGGTCTGTCAAGAACCGATGT
TCACCGGTCATGATGGGCCGCTGCCCAATAGTCGCGTCGTCATATTAATA
AGACCTTCACCTCCCTCAGGGGGTAGGGCGAACACAAAGACACACACGCC
AGCCAAATGTGCAGTGCGTTGGCAGTGCCACTTGTCGAGCAACTTTGTAA
TTCTTTTCTCAGCCATACCCAGCCCTTTGACTTTTGTGCCGTCCTCGGAG
ACAGGGAACTCTCAAGGTTACGTTGAGAGTTTGTTCAAACCCGCTGAGGA
ACAGTCACAGTTCCTTCGGGCTCTTTGCCTAAAATGTCATCTATTCTTTT
TCTCATTCCCTTCCAAGCCATGGCTATATTGTCCACTACCACACGTTTTC
TATGTCTAACCTGTTCTTCCCTTTCTCTCCTCGAAAAAGTTGCGCGCGGC
AAACACAGGGCCTCTTCCCCCTTTGTACCAGCGAACTCCTCGACCTGGTC
ACACAGAAATCGGACCTGAAAGGAGCAGCTTAGACCATGTCGAAGGTAAA
GAGGGATTCGAAATCTAGCTCTCGGAGGGCGAAATTTAGCTGCCCCATCA
TGGAGACAATCATGGAAGGTACGTGAGTTATGTTGGCTCTCCGTCCCTCC
CTGCCTTAAAAAATATACGCTTTTTACACTCTATCCTTACCTCTCTCCCT
CCCCAAGACCCCGTCATTGCCATGGATGGCTACTCCTATGAGCGGAAGGC
CATCGAAGAATGGTTTCGACGTGGCCACCGTGCTTCTCCCGTCACCCGCC
GAGATGTCGAGTCCACGTTAATCATCCCCAATATTCGCCTCAAGGAGCTG
GCGCGGGTACGAACCTTCCTTCCCTCCCCTTCCTTCCTTCCTTTTTCCTC
TCTTTATTGGATGTATTATATGTCTCGTTCATCAGCGCCTACTTCCTCAT
TCTCTCTATTTCCTGAGACATTAATTTCAATTGCCCATGTCTCATCTCTC
CCCGCGCTCCCTACCTCTCTCTTCCCCCTCCCTCCAGGCGAAAAAACTGC
TGCCCGCCAAGCCCACTGACTACACTCCCTACATGGTGAGAGCAGCTGTC
TCAAGATTCCAGCAGAAGTTGGGGATTCGCCACCACTCTCTCGATCTTTC
GATGGAAGGGAGGGAGGGGAGGAAGGAGGAGGAGAAGAAGGAGGAGGAGG
AGGGGGAGGGCGTTGGTAGTAGCAGCCATCACCTCATTAGTAGCAACAAT
ACGGTGGAAGATAAGGAGAAGAAGGAAGAGGAGGTGGTGGAGGCGGAGGA
GGAAAAGGTGGTAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCAGTTGCAGAG
GCGGTTGCAAAGGCGGTTGCAAAGGCGACTCCGAAGGCTGAAGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGGGGAAGAGGATGAGGAGG
AGTTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGCGGAGGAGGCGGAGGA
GTTGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGG
AGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAG
GTAGAGGTAGAGGAAGTAGAAGTAGAGGCTAAGGCGGAGACGGAGGAAGA
GGTAGACGAGGAGGTGGAGGTGGAGGCGGAGATGGCGGTGGAGGAGGAGG
TTAAGGATGCGGAGCCGGAGGAAGAGGAGGCGGAGGCGGAGTTGGAGGTT
GAGGCTGAGGTGGCGGTGGAGATGGAGGAGGAGGTTAAGGAGGCGGAGAC
GGAGGGAGAGGAGGCGGAGGCGGAGGCGGAGGCGGAGGTGGCGGTAGAGG
TGGAGGCAGAGGAGAAGAAGAAGTTGGAGAAGGAGGAGGAGGTGATGGTG
GAGAAGAAGAAAGAGGAGCAGAAGAAGATTGCAGTGGAGGAGGTGGAGGA
AGAGCACCGCTTTGTTTCAGTGAAGGAGCGTGTAGCAGCACTACAGCAAA
AGCGTCAAAGCCTTTCTATCTCCTCTTCCTCTACCGCCATCCGCGCCTTC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCG
CCCTTCCGCTGGAAAGAAAGAAGCGCAAGTGGTGGAAGACGCCCCCCGCT
CAGTCGCCTCGATCATTGCCAGCCTCTCCCGCCCTCCCTCCGGCCCTCCC
CCTCGACGCACCCCCACGCCCTCCAAATTCCTGGTCCCGACAGCCTTCGC
CTCCCAGGCGTCGAAGGAGAAAGGGAAGAAAGGAGGATTGTAAGGGCAGT
AAGAGGAGGAGGGAGGGGAGCAGATGAGGGGCTGACCTTGCCTTTCATCA
AATACTCAGCGGTGGTGATCGAGCAAAGGCGAACCCAAAGCGGCACAAAG
CCGCCGTTTGAAGACAAGCCAATAAGGAAGTGGAGGAGATAGTAAGCGGT
GAGAGCTGTGGTAGGCGCGCAGTGTAGGAAGGAGGTATATCATTGGAAGG
AAGAACACGGAGACTTGTGTGTCAAGAGGCTGAATTTTATAGATTTTATG
AGTCGAGGGTCATGTAATTTTAATGGGAGAGATACAATAGAATGGACCAA
GGGAATGCTGCAGATCGCCAACGGGTGCAGATCGCAGTAGCTGGTACTAC
ATACACTGCCATGAGAGAGGGCATCAGCCGGGAGTCATCACATAGGTATT
TGCGAGCAAGACGAAGGGACGGAAGATGGAGTACCAATATCTTATCACCT
GGTAACCGTAGGAAGCAAGGGAGGGAGGAAGCATTTACATTCAATCAATA
GCACGACAGGCGAGATATCCACCAAGGAGGATTTGAAAAAAATGACACAG
AAACAGCGAAGGAGCAAGGAGGGGAATAGAAAGGTCATCATTTATTAAGG
TAGACTGCAGACATGTGCAGCATACGTACACATATAGCAGTGTTAAATTT
TATTTATTTATGTATTGACATTTTATATTTCAAAGACTTACAGTCAGGAG
CAGACGACAAATTGATGGAAAGAGATAGAGTAAAAAGAAGACAACTCTCT
GGAAAGAGACACCTATCATGTGATTGCTGTTCTCGGTTCCCTCT
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Coding sequence (CDS) from alignment at chr19:778177..781870-

>NO19G02610.1 ID=NO19G02610.1|Name=NO19G02610.1|organism=Nannochloropsis oceanica|type=CDS|length=1374bp|location=Sequence derived from alignment at chr19:778177..781870- (Nannochloropsis oceanica)
ATGTCGAAGGTAAAGAGGGATTCGAAATCTAGCTCTCGGAGGGCGAAATT
TAGCTGCCCCATCATGGAGACAATCATGGAAGACCCCGTCATTGCCATGG
ATGGCTACTCCTATGAGCGGAAGGCCATCGAAGAATGGTTTCGACGTGGC
CACCGTGCTTCTCCCGTCACCCGCCGAGATGTCGAGTCCACGTTAATCAT
CCCCAATATTCGCCTCAAGGAGCTGGCGCGGGCGAAAAAACTGCTGCCCG
CCAAGCCCACTGACTACACTCCCTACATGGTGAGAGCAGCTGTCTCAAGA
TTCCAGCAGAAGTTGGGGATTCGCCACCACTCTCTCGATCTTTCGATGGA
AGGGAGGGAGGGGAGGAAGGAGGAGGAGAAGAAGGAGGAGGAGGAGGGGG
AGGGCGTTGGTAGTAGCAGCCATCACCTCATTAGTAGCAACAATACGGTG
GAAGATAAGGAGAAGAAGGAAGAGGAGGTGGTGGAGGCGGAGGAGGAAAA
GGTGGTAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCAGTTGCAGAGGCGGTT
GCAAAGGCGGTTGCAAAGGCGACTCCGAAGGCTGAAGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAAGAGGAGGAGGGGGAAGAGGATGAGGAGGAGTTGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGTGGCGGAGGAGGCGGAGGAGTTGGC
GGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGG
AGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAG
GCGGAGGCGGAGGCGGAGGTGGCGGTAGAGGTGGAGGCAGAGGAGAAGAA
GAAGTTGGAGAAGGAGGAGGAGGTGATGGTGGAGAAGAAGAAAGAGGAGC
AGAAGAAGATTGCAGTGGAGGAGGTGGAGGAAGAGCACCGCTTTGTTTCA
GTGAAGGAGCGTGTAGCAGCACTACAGCAAAAGCGTCAAAGCCTTTCTAT
CTCCTCTTCCTCTACCGCCATCCGCGCCTTCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCCGCCCTTCCGCTGGAAAGAAA
GAAGCGCAAGTGGTGGAAGACGCCCCCCGCTCAGTCGCCTCGATCATTGC
CAGCCTCTCCCGCCCTCCCTCCGGCCCTCCCCCTCGACGCACCCCCACGC
CCTCCAAATTCCTGGTCCCGACAGCCTTCGCCTCCCAGGCGTCGAAGGAG
AAAGGGAAGAAAGGAGGATTGTAA
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Synonyms
Publications