NO19G02420, NO19G02420 (gene) Nannochloropsis oceanica

Overview
NameNO19G02420
Unique NameNO19G02420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1073
Alignment locationchr19:702346..703418 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:702346..703418 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013865DUF1754_euk
Homology
BLAST of NO19G02420 vs. NCBI_GenBank
Match: EWM23731.1 (hypothetical protein Naga_100734g2 [Nannochloropsis gaditana])

HSP 1 Score: 238.8 bits (608), Expect = 1.700e-59
Identity = 160/234 (68.38%), Postives = 175/234 (74.79%), Query Frame = 0
Query:    1 MSESYRKAVGGRLKIGGKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEGGE-----EAPFLQAKQGTGRITTSGQIVTGYETEFLRELRVNDALIITHPSTFIEETRIIKMIVSNSGMSLSSGFSTDLISTTGFRYLHPPEEEGEDGREAXXXXXXXXXXXXXXDKAFGTYGGGGGTKLVYRVKKGGVYGGYKIVTEDTGAALSRTELLERRLQHKSDRHAN 230
            MSESYR+AVGGRLKIGGKEV       XXXXXXXXXX                    G +GG      E P LQAK G+GRIT+SGQ+VTGYETEFL+ELRVNDALIITHPST +EETRI+KMIVSN G+SLSS FS+DLI+TT FRY+H            XXXXXXXXXXXXXX   FGTYGG GG+KLVYRVKK G YGGY+IVTEDTGA+LSRTELLERRLQHKSDRHAN
Sbjct:   12 MSESYRRAVGGRLKIGGKEV-DVSRKKXXXXXXXXXXEENLEADPDPRRVLKHSKEEGNDGGSGAEEGETPLLQAKAGSGRITSSGQVVTGYETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGTYGGAGGSKLVYRVKKTGTYGGYRIVTEDTGASLSRTELLERRLQHKSDRHAN 244          
BLAST of NO19G02420 vs. NCBI_GenBank
Match: XP_005852439.1 (Niemann-Pick C1 protein [Nannochloropsis gaditana CCMP526] >EKU23393.1 Niemann-Pick C1 protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 217.2 bits (552), Expect = 5.200e-53
Identity = 130/177 (73.45%), Postives = 143/177 (80.79%), Query Frame = 0
Query:   58 GEEGGE-----EAPFLQAKQGTGRITTSGQIVTGYETEFLRELRVNDALIITHPSTFIEETRIIKMIVSNSGMSLSSGFSTDLISTTGFRYLHPPEEEGEDGREAXXXXXXXXXXXXXXDKAFGTYGGGGGTKLVYRVKKGGVYGGYKIVTEDTGAALSRTELLERRLQHKSDRHAN 230
            G EGG      E P LQAK G+GRIT+SGQ+VTGYETEFL+ELRVNDALIITHPST +EETRI+KMIVSN G+SLSS FS+DLI+TT FRY+H            XXXXXXXXXXXXXX    GTYGG GG+KLVYRVKK G YGGY+IVTED GA+LSRTELLERRLQHKSDRHAN
Sbjct:   47 GNEGGSGAEEGETPLLQAKAGSGRITSSGQVVTGYETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTYGGAGGSKLVYRVKKAGTYGGYRIVTEDMGASLSRTELLERRLQHKSDRHAN 223          
BLAST of NO19G02420 vs. NCBI_GenBank
Match: XP_008866274.1 (hypothetical protein H310_03960 [Aphanomyces invadans] >ETW04836.1 hypothetical protein H310_03960 [Aphanomyces invadans])

HSP 1 Score: 137.1 bits (344), Expect = 6.800e-29
Identity = 82/162 (50.62%), Postives = 101/162 (62.35%), Query Frame = 0
Query:   72 QGTGRITTSGQIVTG-YETEFLRELRVNDALIITHPSTFIEETRIIKMIVSNSGMSLSSGFSTDLISTTGFRYLH-PPEEEGEDGREAXXXXXXXXXXXXXXDKAFGTYGGG--GGTKLVYRVKKGGVYGGYKIVTEDTGAALSRTELLERRLQHKSDRHAN 230
            QGTGRI TSG  V G   T+F  EL + DALII HP++  EETRI+KM++S+  +S+SS FS+DL+STT F Y+  PPEE  +D  E+                AFGTY GG   GT+  YRVKK GVYGGY I+ E   A  SR ELL+ R + K DRH N
Sbjct:   54 QGTGRILTSGTTVMGKMGTKFFHELSIGDALIINHPTSLKEETRIVKMVLSDVSVSISSPFSSDLVSTTTFWYIKAPPEEVDKDAVESKKRSKKNDEEA----SAFGTYAGGTTAGTEFTYRVKKAGVYGGYAIIKETADANRSREELLDIRSKRKGDRHCN 211          
BLAST of NO19G02420 vs. NCBI_GenBank
Match: CCI45275.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 136.3 bits (342), Expect = 1.200e-28
Identity = 77/159 (48.43%), Postives = 104/159 (65.41%), Query Frame = 0
Query:   72 QGTGRITTSGQIVTG-YETEFLRELRVNDALIITHPSTFIEETRIIKMIVSNSGMSLSSGFSTDLISTTGFRYLHPPEEEGEDGREAXXXXXXXXXXXXXXDKAFGTYGGGG--GTKLVYRVKKGGVYGGYKIVTEDTGAALSRTELLERRLQHKSDRH 228
            +GTGRI +SG  + G   T+FL+EL V DA+II HP++ +EETRI++M++S+   SLSS FSTDLIS+T F Y++ P+++ E   E+                AFGTY GG   GT+L YRVKK GVYGGY+I+ E   A  +R ELL+ R + K DRH
Sbjct: 1453 KGTGRILSSGTTLMGQIGTKFLQELSVGDAIIIQHPTSLVEETRILRMVLSDVSASLSSPFSTDLISSTAFHYINAPKDDDEQENES---TLKKRILKSDEKNAFGTYAGGTEMGTELTYRVKKSGVYGGYQIIREKASAVRTREELLDFREKKKGDRH 1608          
BLAST of NO19G02420 vs. NCBI_GenBank
Match: XP_005855730.1 (Niemann-Pick C1 protein [Nannochloropsis gaditana CCMP526] >EKU20632.1 Niemann-Pick C1 protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 136.0 bits (341), Expect = 1.500e-28
Identity = 69/93 (74.19%), Postives = 79/93 (84.95%), Query Frame = 0
Query:   58 GEEGGE-----EAPFLQAKQGTGRITTSGQIVTGYETEFLRELRVNDALIITHPSTFIEETRIIKMIVSNSGMSLSSGFSTDLISTTGFRYLH 146
            G EGG      E P LQAK G+GRIT+SGQ+VTGYETEFL+ELRVNDALIITHPST +EETRI+KMIVSN G+SLSS FS+DLI+TT FRY+H
Sbjct:   47 GNEGGSGAEEGETPLLQAKAGSGRITSSGQVVTGYETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIH 139          
BLAST of NO19G02420 vs. NCBI_GenBank
Match: CCA22318.1 (conserved unknown protein putative [Albugo laibachii Nc14])

HSP 1 Score: 132.5 bits (332), Expect = 1.700e-27
Identity = 76/159 (47.80%), Postives = 102/159 (64.15%), Query Frame = 0
Query:   72 QGTGRITTSGQIVTG-YETEFLRELRVNDALIITHPSTFIEETRIIKMIVSNSGMSLSSGFSTDLISTTGFRYLHPPEEEGEDGREAXXXXXXXXXXXXXXDKAFGTYGGGG--GTKLVYRVKKGGVYGGYKIVTEDTGAALSRTELLERRLQHKSDRH 228
            +GTGRI +SG  + G   T+FL+EL V DA+II HP++ +EETRI++M++S+   SLSS FSTDLIS+T F Y+  P++E E   +                 AFGTY GG   GT+L YRVKK GVYGGY+++ E   A  +R ELL+ R + K DRH
Sbjct:   79 KGTGRILSSGTTLMGQIGTKFLQELSVGDAIIIQHPTSLMEETRILRMVLSDVSASLSSPFSTDLISSTSFSYIKAPKDEDE---QENASTLKKRILKSDEKNAFGTYAGGTEMGTELTYRVKKSGVYGGYQLIREKASAVRTREELLDFREKKKGDRH 234          
BLAST of NO19G02420 vs. NCBI_GenBank
Match: CBJ31876.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 131.3 bits (329), Expect = 3.700e-27
Identity = 74/157 (47.13%), Postives = 97/157 (61.78%), Query Frame = 0
Query:   73 GTGRITTSGQIVTGYETEFLRELRVNDALIITHPSTFIEETRIIKMIVSNSGMSLSSGFSTDLISTTGFRYLHPPEEEGEDGREAXXXXXXXXXXXXXXDKAFGTYGGGGGTKLVYRVKKGGVYGGYKIVTEDTGAALSRTELLERRLQHKSDRHAN 230
            GTGRIT+SG  V G+E +F+ EL   DA++ITHP+T  EETRIIKM++SN  +S+SS FS+DLISTT FRY+  P  E     +A              D AFGTY G GG +LVYR +     G Y+I+      A++R E+L+ R   K+DRH N
Sbjct:   71 GTGRITSSGTAVHGHEAKFMDELHSGDAILITHPTTLREETRIIKMVLSNMSISISSPFSSDLISTTNFRYIKAPRLEVSAETKA---EERKKRKVQEEDSAFGTYAGAGGKRLVYRERTPA--GNYRIIETTVDEAMTREEMLDMRATKKADRHCN 222          
BLAST of NO19G02420 vs. NCBI_GenBank
Match: XP_009823372.1 (hypothetical protein H257_01727 [Aphanomyces astaci] >ETV86573.1 hypothetical protein H257_01727 [Aphanomyces astaci])

HSP 1 Score: 131.0 bits (328), Expect = 4.900e-27
Identity = 78/162 (48.15%), Postives = 99/162 (61.11%), Query Frame = 0
Query:   72 QGTGRITTSGQIVTG-YETEFLRELRVNDALIITHPSTFIEETRIIKMIVSNSGMSLSSGFSTDLISTTGFRYLH-PPEEEGEDGREAXXXXXXXXXXXXXXDKAFGTYGGG--GGTKLVYRVKKGGVYGGYKIVTEDTGAALSRTELLERRLQHKSDRHAN 230
            QGTGRI TSG  V G   T+F  EL + DALII HP++  EETRI+KM++S+  +S+SS FS+DL+STT F Y+  PPEE  +D  E                 AFGTY GG   G++  YRVKK G YGGY ++ E   A  SR +LL+ R + K DRH N
Sbjct:   53 QGTGRILTSGTTVMGKMGTKFYHELSIGDALIIMHPTSMKEETRIVKMVLSDVSISISSPFSSDLVSTTTFSYIKAPPEEIDQDAIETKKRSKKNEEETF----AFGTYAGGTSAGSEFTYRVKKAGAYGGYAVLKETADANRSREDLLDIRSKRKGDRHCN 210          
BLAST of NO19G02420 vs. NCBI_GenBank
Match: OQR93173.1 (Niemann-Pick C1 protein [Thraustotheca clavata])

HSP 1 Score: 129.4 bits (324), Expect = 1.400e-26
Identity = 93/165 (56.36%), Postives = 112/165 (67.88%), Query Frame = 0
Query:   68 LQAKQGTGRITTSGQIVTG-YETEFLRELRVNDALIITHPSTFIEETRIIKMIVSNSGMSLSSGFSTDLISTTGFRYLHPPEEEGEDGREAXXXXXXXXXXXXXXDKAFGTYGGG--GGTKLVYRVKKGGVYGGYKIVTEDTGAALSRTELLERRLQHKSDRHAN 230
            L+  QGTGRI TSG  V G   T+FL EL V DA+II HP++  EETRI++M++S+  +SLSSGFS+DLISTT F Y+  P          XXXXXXXXXXXXXX  AFGTY GG   GT+  YRVKK G+YGGY I+ E   +  SR ELL+ R + K DRH N
Sbjct:   49 LKKLQGTGRILTSGTTVMGRLGTKFLSELSVGDAMIIQHPTSGQEETRIVRMVLSDVSISLSSGFSSDLISTTTFHYIKAP---XXXXXXXXXXXXXXXXXXXXXXXAFGTYAGGTTAGTQYTYRVKKSGIYGGYAIMKETADSNRSREELLDIRSKKKGDRHCN 210          
BLAST of NO19G02420 vs. NCBI_GenBank
Match: GAY05093.1 (putative dehydrogenase [Pythium insidiosum])

HSP 1 Score: 124.4 bits (311), Expect = 4.600e-25
Identity = 86/164 (52.44%), Postives = 106/164 (64.63%), Query Frame = 0
Query:   68 LQAKQGTGRITTSGQIVTGYE-TEFLRELRVNDALIITHPSTFIEETRIIKMIVSNSGMSLSSGFSTDLISTTGFRYLHPPEEEGEDGREAXXXXXXXXXXXXXXDKAFGTYGGG--GGTKLVYRVKKGGVYGGYKIVTEDTGAALSRTELLERRLQHKSDRHA 229
            L  +QG+GRI +SG  V G   T FL+EL V DALII HP T  EETRI++M++S+   ++SS FS+DL+S+T F+Y+  P          XXXXXXXXXXX     AFGTY GG   GT   YRVKK G YGGY IVTE    + SR ELL+ R + K DRH+
Sbjct:  811 LVKRQGSGRILSSGTTVMGQPGTRFLQELAVGDALIIQHPKTLTEETRIVRMVLSDVSCAISSAFSSDLVSSTPFQYIKAPXXXXXXXXXXXXXXXXXXXXXA---AAFGTYAGGTEAGTTYSYRVKKSGTYGGYAIVTERAQESRSREELLDMRSKRKGDRHS 971          
The following BLAST results are available for this feature:
BLAST of NO19G02420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23731.11.700e-5968.38hypothetical protein Naga_100734g2 [Nannochloropsi... [more]
XP_005852439.15.200e-5373.45Niemann-Pick C1 protein [Nannochloropsis gaditana ... [more]
XP_008866274.16.800e-2950.62hypothetical protein H310_03960 [Aphanomyces invad... [more]
CCI45275.11.200e-2848.43unnamed protein product [Albugo candida][more]
XP_005855730.11.500e-2874.19Niemann-Pick C1 protein [Nannochloropsis gaditana ... [more]
CCA22318.11.700e-2747.80conserved unknown protein putative [Albugo laibach... [more]
CBJ31876.13.700e-2747.13conserved unknown protein [Ectocarpus siliculosus][more]
XP_009823372.14.900e-2748.15hypothetical protein H257_01727 [Aphanomyces astac... [more]
OQR93173.11.400e-2656.36Niemann-Pick C1 protein [Thraustotheca clavata][more]
GAY05093.14.600e-2552.44putative dehydrogenase [Pythium insidiosum][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004583NSK004583Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02420.1NO19G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599476gene_7643Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100734g2gene6724Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02420.1NO19G02420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02420 ID=NO19G02420|Name=NO19G02420|organism=Nannochloropsis oceanica|type=gene|length=1073bp
AATAAACACGCAGACATGTCTGAGTCCTACCGCAAGGCCGTCGGTGGACG
TCTCAAGATTGGCGGCAAAGAAGTGGACGTgtaagtgtgagcgggaagag
gcaaggtactccatgacgaatgaagtaatgcacaggtccatcactattat
atgtcctctcccttaacgatcgtcccgccctctccccgcatttctttttc
cattttatgaccggctcgttctccaccagtactgtcccatcgtttgttgg
tccggccgcgcttctccctcctccccactccgtcccatccttcttcccat
cttcccccccctcgcggcccaaacctctaaaacctaccgcatctacccac
tccaaacagCAAGAAGAAAAAGAAGTCCCACAAGAAGAAACGTGCCCGTG
ACAAGGATGACGACGGCGACCATCCGACAAGCAGCAGCTCTCGTTCCCGC
AAAGAAGATGTGGATGGGGAGGAAGGGGGGGAGGAAGCTCCCTTCCTCCA
AGCCAAGCAAGGCACAGGCCGTATAACGACCAGCGGACAGATCGTCACGG
GCTATGAGACAGAATTTCTGCGAGAATTGAGGGTCAATGATGCATTAATC
ATCACGCATCCCTCCACTTTCATCGAGGAAACCCGGATCATTAAAATGAT
TGTCTCGAATAGCGGCATGTCCCTCTCCAGTGGCTTCTCCACGGACCTCA
TAAGCACAACAGGGTTCCGGTACCTTCATCCACCTGAAGAAGAGGGGGAG
GATGGGAGGGAGGCCCGGGAGGAGGAGGGGAGGAAGAGGGAGAAAGCGGG
GGAGGAGGACAAGGCGTTTGGGACCTACGGAGGAGGGGGAGGGACGAAGC
TTGTGTACAGGGTGAAGAAAGGAGGGGTATATGGTGGATATAAGATCGTG
ACAGAAGACACGGGCGCGGCCTTGTCGCGGACGGAGTTGTTGGAGAGGAG
ATTGCAGCACAAGAGTGATCGACACGCGAATTAGGGATGGAAGGAGAAAA
GGCGAGCTAAAGCAGAAGTTGAAAAGACGAAGTTGTAATGTTATGGGTCC
TTGCAGGCTCTTATATACGTCGT
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protein sequence of NO19G02420.1

>NO19G02420.1-protein ID=NO19G02420.1-protein|Name=NO19G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MSESYRKAVGGRLKIGGKEVDVKKKKKSHKKKRARDKDDDGDHPTSSSSR
SRKEDVDGEEGGEEAPFLQAKQGTGRITTSGQIVTGYETEFLRELRVNDA
LIITHPSTFIEETRIIKMIVSNSGMSLSSGFSTDLISTTGFRYLHPPEEE
GEDGREAREEEGRKREKAGEEDKAFGTYGGGGGTKLVYRVKKGGVYGGYK
IVTEDTGAALSRTELLERRLQHKSDRHAN*
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Synonyms
Publications