NO19G02420.1, NO19G02420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02420.1
Unique NameNO19G02420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length794
Alignment locationchr19:702346..703418 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:702346..703418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02420.1 vs.
Match: EWM23731.1 (hypothetical protein Naga_100734g2 [Nannochloropsis gaditana])

HSP 1 Score: 308.1 bits (788), Expect = 2.200e-80
Identity = 172/234 (73.50%), Postives = 198/234 (84.62%), Query Frame = 0 
Query:    1 MSESYRKAVGGRLKIGGKEVDVKKKKKSHKKKRARDKDDDGD---HPTSSSSRSRKEDVDGEEGGEEA--PFLQAKQGTGRITTSGQIVTGYETEFLRELRVNDALIITHPSTFIEETRIIKMIVSNSGMSLSSGFSTDLISTTGFRYLHPPEEEGEDGREAREEEGRKREKAGEEDKAFGTYGGGGGTKLVYRVKKGGVYGGYKIVTEDTGAALSRTELLERRLQHKSDRHAN 230
            MSESYR+AVGGRLKIGGKEVDV +KKK  KKKR R ++++ +    P      S++E  DG  G EE   P LQAK G+GRIT+SGQ+VTGYETEFL+ELRVNDALIITHPST +EETRI+KMIVSN G+SLSS FS+DLI+TT FRY+HPPEE+ E GREAREEE R++EKAGEE+KAFGTYGG GG+KLVYRVKK G YGGY+IVTEDTGA+LSRTELLERRLQHKSDRHAN
Sbjct:   12 MSESYRRAVGGRLKIGGKEVDVSRKKKG-KKKRLRTEEENLEADPDPRRVLKHSKEEGNDGGSGAEEGETPLLQAKAGSGRITSSGQVVTGYETEFLQELRVNDALIITHPSTLMEETRIVKMIVSNKGLSLSSPFSSDLITTTRFRYIHPPEEDEEGGREAREEERRRQEKAGEEEKAFGTYGGAGGSKLVYRVKKTGTYGGYRIVTEDTGASLSRTELLERRLQHKSDRHAN 244
The following BLAST results are available for this feature:
BLAST of NO19G02420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23731.12.200e-8073.50hypothetical protein Naga_100734g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02420NO19G02420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02420.1NO19G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02420.1.cds1NO19G02420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02420.1.cds2NO19G02420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02420.1 ID=NO19G02420.1|Name=NO19G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=794bp
AATAAACACGCAGACATGTCTGAGTCCTACCGCAAGGCCGTCGGTGGACG
TCTCAAGATTGGCGGCAAAGAAGTGGACGTCAAGAAGAAAAAGAAGTCCC
ACAAGAAGAAACGTGCCCGTGACAAGGATGACGACGGCGACCATCCGACA
AGCAGCAGCTCTCGTTCCCGCAAAGAAGATGTGGATGGGGAGGAAGGGGG
GGAGGAAGCTCCCTTCCTCCAAGCCAAGCAAGGCACAGGCCGTATAACGA
CCAGCGGACAGATCGTCACGGGCTATGAGACAGAATTTCTGCGAGAATTG
AGGGTCAATGATGCATTAATCATCACGCATCCCTCCACTTTCATCGAGGA
AACCCGGATCATTAAAATGATTGTCTCGAATAGCGGCATGTCCCTCTCCA
GTGGCTTCTCCACGGACCTCATAAGCACAACAGGGTTCCGGTACCTTCAT
CCACCTGAAGAAGAGGGGGAGGATGGGAGGGAGGCCCGGGAGGAGGAGGG
GAGGAAGAGGGAGAAAGCGGGGGAGGAGGACAAGGCGTTTGGGACCTACG
GAGGAGGGGGAGGGACGAAGCTTGTGTACAGGGTGAAGAAAGGAGGGGTA
TATGGTGGATATAAGATCGTGACAGAAGACACGGGCGCGGCCTTGTCGCG
GACGGAGTTGTTGGAGAGGAGATTGCAGCACAAGAGTGATCGACACGCGA
ATTAGGGATGGAAGGAGAAAAGGCGAGCTAAAGCAGAAGTTGAAAAGACG
AAGTTGTAATGTTATGGGTCCTTGCAGGCTCTTATATACGTCGT
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protein sequence of NO19G02420.1

>NO19G02420.1-protein ID=NO19G02420.1-protein|Name=NO19G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MSESYRKAVGGRLKIGGKEVDVKKKKKSHKKKRARDKDDDGDHPTSSSSR
SRKEDVDGEEGGEEAPFLQAKQGTGRITTSGQIVTGYETEFLRELRVNDA
LIITHPSTFIEETRIIKMIVSNSGMSLSSGFSTDLISTTGFRYLHPPEEE
GEDGREAREEEGRKREKAGEEDKAFGTYGGGGGTKLVYRVKKGGVYGGYK
IVTEDTGAALSRTELLERRLQHKSDRHAN*
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mRNA from alignment at chr19:702346..703418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02420.1 ID=NO19G02420.1|Name=NO19G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1073bp|location=Sequence derived from alignment at chr19:702346..703418- (Nannochloropsis oceanica)
AATAAACACGCAGACATGTCTGAGTCCTACCGCAAGGCCGTCGGTGGACG
TCTCAAGATTGGCGGCAAAGAAGTGGACGTGTAAGTGTGAGCGGGAAGAG
GCAAGGTACTCCATGACGAATGAAGTAATGCACAGGTCCATCACTATTAT
ATGTCCTCTCCCTTAACGATCGTCCCGCCCTCTCCCCGCATTTCTTTTTC
CATTTTATGACCGGCTCGTTCTCCACCAGTACTGTCCCATCGTTTGTTGG
TCCGGCCGCGCTTCTCCCTCCTCCCCACTCCGTCCCATCCTTCTTCCCAT
CTTCCCCCCCCTCGCGGCCCAAACCTCTAAAACCTACCGCATCTACCCAC
TCCAAACAGCAAGAAGAAAAAGAAGTCCCACAAGAAGAAACGTGCCCGTG
ACAAGGATGACGACGGCGACCATCCGACAAGCAGCAGCTCTCGTTCCCGC
AAAGAAGATGTGGATGGGGAGGAAGGGGGGGAGGAAGCTCCCTTCCTCCA
AGCCAAGCAAGGCACAGGCCGTATAACGACCAGCGGACAGATCGTCACGG
GCTATGAGACAGAATTTCTGCGAGAATTGAGGGTCAATGATGCATTAATC
ATCACGCATCCCTCCACTTTCATCGAGGAAACCCGGATCATTAAAATGAT
TGTCTCGAATAGCGGCATGTCCCTCTCCAGTGGCTTCTCCACGGACCTCA
TAAGCACAACAGGGTTCCGGTACCTTCATCCACCTGAAGAAGAGGGGGAG
GATGGGAGGGAGGCCCGGGAGGAGGAGGGGAGGAAGAGGGAGAAAGCGGG
GGAGGAGGACAAGGCGTTTGGGACCTACGGAGGAGGGGGAGGGACGAAGC
TTGTGTACAGGGTGAAGAAAGGAGGGGTATATGGTGGATATAAGATCGTG
ACAGAAGACACGGGCGCGGCCTTGTCGCGGACGGAGTTGTTGGAGAGGAG
ATTGCAGCACAAGAGTGATCGACACGCGAATTAGGGATGGAAGGAGAAAA
GGCGAGCTAAAGCAGAAGTTGAAAAGACGAAGTTGTAATGTTATGGGTCC
TTGCAGGCTCTTATATACGTCGT
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Coding sequence (CDS) from alignment at chr19:702346..703418-

>NO19G02420.1 ID=NO19G02420.1|Name=NO19G02420.1|organism=Nannochloropsis oceanica|type=CDS|length=690bp|location=Sequence derived from alignment at chr19:702346..703418- (Nannochloropsis oceanica)
ATGTCTGAGTCCTACCGCAAGGCCGTCGGTGGACGTCTCAAGATTGGCGG
CAAAGAAGTGGACGTCAAGAAGAAAAAGAAGTCCCACAAGAAGAAACGTG
CCCGTGACAAGGATGACGACGGCGACCATCCGACAAGCAGCAGCTCTCGT
TCCCGCAAAGAAGATGTGGATGGGGAGGAAGGGGGGGAGGAAGCTCCCTT
CCTCCAAGCCAAGCAAGGCACAGGCCGTATAACGACCAGCGGACAGATCG
TCACGGGCTATGAGACAGAATTTCTGCGAGAATTGAGGGTCAATGATGCA
TTAATCATCACGCATCCCTCCACTTTCATCGAGGAAACCCGGATCATTAA
AATGATTGTCTCGAATAGCGGCATGTCCCTCTCCAGTGGCTTCTCCACGG
ACCTCATAAGCACAACAGGGTTCCGGTACCTTCATCCACCTGAAGAAGAG
GGGGAGGATGGGAGGGAGGCCCGGGAGGAGGAGGGGAGGAAGAGGGAGAA
AGCGGGGGAGGAGGACAAGGCGTTTGGGACCTACGGAGGAGGGGGAGGGA
CGAAGCTTGTGTACAGGGTGAAGAAAGGAGGGGTATATGGTGGATATAAG
ATCGTGACAGAAGACACGGGCGCGGCCTTGTCGCGGACGGAGTTGTTGGA
GAGGAGATTGCAGCACAAGAGTGATCGACACGCGAATTAG
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Synonyms
Publications