NO19G02290, NO19G02290 (gene) Nannochloropsis oceanica

Overview
NameNO19G02290
Unique NameNO19G02290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1835
Alignment locationchr19:656196..658030 +

Link to JBrowse

Properties
Property NameValue
DescriptionTranscription elognation factor Eaf
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:656196..658030 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0032783ELL-EAF complex
Vocabulary: INTERPRO
TermDefinition
IPR027093EAF_fam
IPR019194Tscrpt_elong_fac_Eaf_N
Homology
[Close]
BLAST of NO19G02290 vs. NCBI_GenBank
Match: EWM23724.1 (Transcription elognation factor Eaf [Nannochloropsis gaditana])

HSP 1 Score: 158.7 bits (400), Expect = 5.400e-35
Identity = 79/128 (61.72%), Postives = 95/128 (74.22%), Query Frame = 0 
Query:    6 SGSSSPWPAGQEVPIELGMDADREFLLIQYRFKPGTVDYDDPASYEMQPSGEVTIYHPLKGGE---GGREGE---EEGKKTLSFHGHRQPIQNQGREFVLIYEEDRGVFEMRRLEALVPHVQDARSHG 128
            S  +SPWPAG EVP+ L +D  +E LL+QYRFKPGTVDYD  A+Y+++PSG VT++H LK G     GR  E   EEG+ TLSFHGHRQPI  QGREFVLIYE +   FEMRRL+ALVP V+D R+ G
Sbjct:    3 SNGTSPWPAGGEVPVNLNLDQGKECLLLQYRFKPGTVDYDVGATYDIEPSGRVTVHHALKAGAQTGPGRHHEDKKEEGRATLSFHGHRQPIHTQGREFVLIYEPETAKFEMRRLDALVPDVRDERAQG 130
The following BLAST results are available for this feature:
BLAST of NO19G02290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23724.15.400e-3561.72Transcription elognation factor Eaf [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004570NSK004570Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02290.1NO19G02290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632389gene_7630Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100923g2gene6732Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02290.1NO19G02290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02290 ID=NO19G02290|Name=NO19G02290|organism=Nannochloropsis oceanica|type=gene|length=1835bp
ATGGCCAGTAGCAATAGCGGTAGCTCATCCCCGTGGCCCGCCGGTCAGGA
AGTCCCTATTGAGCTGGGCATGGATGCTGgtacgtcgtgcccctccctcc
cttcttcctttcattcatacttccaaccccctcaccgtcttaaccaaata
cacagACAGGGAATTTCTCCTTATCCAGTATAGATTTAAGCCAGGCACGG
TAGATTATGATGATCCAGCAAGCTATGAAATGCAACCCTCGGGGGAAGTC
ACCATTTATCACCCTCTCAAAGGAGGGGAGGGAGGGAGGGAGGGGGAAGA
GGAAGGCAAGAAGACTTTATCATTTCACGGACACAGGCAACCGATTCAGA
ATCAGGGGAGGGAATTTGTATTGATTTATGAGGAGGATAGGGGGGTGTTT
GAGATGCGGAGATTAGAGGCATTGGTGCCACATGTGCAGGATGCCAGATC
TCATGGGGGGGAGGGCGGGAGGGAGGGAGGGGGGGGGTTGGTCGCGATGG
GAGGAGGAGTTCAAAGGAAAAAATTAATGGTGCCTCCTGCACCAGCGATA
GTGGGAGCAGTGGCAGCAGCTGAGGTGGGGGAAAACGGAGGAGGGAAAGC
TGAAGGAGAGGAGGAAGGAGATGGGGGAGAGGAAGGTGGCGGGGTGCGGG
CAGCGCCGGCTCAGGCTTTGACGCAGAAGAAAGTGCAAGCCATGATAAAG
CAGCAGAAATTGAAGAAGGAAAGGGAAAAAAAGAAGGAGGAGAAAGAGAG
GGAAAAGAAGGAAAAGGAGGAAGAGAAGAAGATGGTAAAGGAAGAGGAGA
AGCTGAGGAAGAAGGAGGAGAAGGTGCAAGAGAAAAAGGAAAGGAAAGCT
TACAAGGTGAATGCGAAGGATGTCAAGAAGAAGGAGGGCACGGACGCCAG
CAAGGACGGAGGAAGAAGGGGGGAAGAAGAAGAAGATGGCTCGGTTTCGT
CTTTATCAGTGATGGTAGGGAAGAAGTGCGGGCGTCCACCTGGCAGCGGG
ACGAAGGCCGCAGCTGCAGCAGCAGCAGCATCATCACCAGCAGCAACTGC
GGCAGTGAAGGACGGTGAAAAAGACCGAGGAGGAGAGGGAAAAGATGAAG
AGACGAAGATGGAGGAGGAGGAAGGAGAGGAGGAGAGCATGGAAATAGAG
GATGAGTCGGAGCAGAAGCAGGAAGAGGAGCAACGTCAAATGGACGCGCG
AGGGAAGCAGCAGCAGCAGCAGCACCAGCAGGCGCAATTAGAAAAGGAGG
AGGAAAATAAGAAAGAGACCGAGGAGAAGCCGAAGAAGAAGCTGACCATC
AACCTTAGTGCACCTTTCGCTACGGTGCGAGCACCAGTAGCAGCACCCGA
AAAAAGAAAGGGACATTGGAGGGAGGGAGGGGAAGGGGGAGAGGAAGGGG
AAGGAGGAGGAGGAGGAGGAGGAGGAGAGGAAGCGATGGTGCCCAAAAGA
CGTGGTCGTCCGCCTGGCAGTGGCAAAAAAGCGACAGCAGTCCGAGAAGG
GGGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCCCAGCAGCCGGAA
CAGCAGCAGCAGCAGCAGCACGTCCCAGGAAACGAGGGCGGCCTCCAGGG
AGTGGGAAGAAGAAGGACGAGGTGGGCAAAATAGGAGTGAAAAATGAGGC
GGAGGCAGTTACAGCAGCAGTAGCGGAGGAGGAGGCAGAAGCAGCGGTGC
TTGCATTGCAGGCTTTGGGGGGGGTTAAGGAGGGGGAGGGAACGGGGCAA
GAAATGGATGGGGAAGTGGTGAAAAAGCAACGGAATGGCAGCAAGTGAGG
AAGGGTATAAAGAATCTAATTAACGCGACTTCCGC
back to top

protein sequence of NO19G02290.1

>NO19G02290.1-protein ID=NO19G02290.1-protein|Name=NO19G02290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=574bp
MASSNSGSSSPWPAGQEVPIELGMDADREFLLIQYRFKPGTVDYDDPASY
EMQPSGEVTIYHPLKGGEGGREGEEEGKKTLSFHGHRQPIQNQGREFVLI
YEEDRGVFEMRRLEALVPHVQDARSHGGEGGREGGGGLVAMGGGVQRKKL
MVPPAPAIVGAVAAAEVGENGGGKAEGEEEGDGGEEGGGVRAAPAQALTQ
KKVQAMIKQQKLKKEREKKKEEKEREKKEKEEEKKMVKEEEKLRKKEEKV
QEKKERKAYKVNAKDVKKKEGTDASKDGGRRGEEEEDGSVSSLSVMVGKK
CGRPPGSGTKAAAAAAAASSPAATAAVKDGEKDRGGEGKDEETKMEEEEG
EEESMEIEDESEQKQEEEQRQMDARGKQQQQQHQQAQLEKEEENKKETEE
KPKKKLTINLSAPFATVRAPVAAPEKRKGHWREGGEGGEEGEGGGGGGGG
EEAMVPKRRGRPPGSGKKATAVREGGGGGGGGGGGGGPAAGTAAAAAARP
RKRGRPPGSGKKKDEVGKIGVKNEAEAVTAAVAEEEAEAAVLALQALGGV
KEGEGTGQEMDGEVVKKQRNGSK*
back to top
Synonyms
Publications