NO19G02290.1, NO19G02290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02290.1
Unique NameNO19G02290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1759
Alignment locationchr19:656196..658030 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:656196..658030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO19G02290.1 vs.
Match: EWM23724.1 (Transcription elognation factor Eaf [Nannochloropsis gaditana])

HSP 1 Score: 154.1 bits (388), Expect = 1.300e-33
Identity = 101/196 (51.53%), Postives = 121/196 (61.73%), Query Frame = 0 
Query:    6 SGSSSPWPAGQEVPIELGMDADREFLLIQYRFKPGTVDYDDPASYEMQPSGEVTIYHPLKGGE---GGREGE---EEGKKTLSFHGHRQPIQNQGREFVLIYEEDRGVFEMRRLEALVPHVQDARSHGGEGGREGGGGLVAMGGGVQRKKLMVPPAPAIVGAVAAAEVGENGGGKAEGEEEGDGGEEGGGVRAAPA 196
            S  +SPWPAG EVP+ L +D  +E LL+QYRFKPGTVDYD  A+Y+++PSG VT++H LK G     GR  E   EEG+ TLSFHGHRQPI  QGREFVLIYE +   FEMRRL+ALVP V+D R+ GG  G  G  G +  G     KKL     PA      A +  E  GGK  G   G+GG   G   +A A
Sbjct:    3 SNGTSPWPAGGEVPVNLNLDQGKECLLLQYRFKPGTVDYDVGATYDIEPSGRVTVHHALKAGAQTGPGRHHEDKKEEGRATLSFHGHRQPIHTQGREFVLIYEPETAKFEMRRLDALVPDVRDERAQGGAEG--GSAGRMEDG-----KKL----GPASWPPSGAKDEEEMEGGKERG--GGNGGRIDGARGSAEA 185
The following BLAST results are available for this feature:
BLAST of NO19G02290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23724.11.300e-3351.53Transcription elognation factor Eaf [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02290NO19G02290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02290.1NO19G02290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02290.1.cds1NO19G02290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02290.1.cds2NO19G02290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02290.1 ID=NO19G02290.1|Name=NO19G02290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1759bp
ATGGCCAGTAGCAATAGCGGTAGCTCATCCCCGTGGCCCGCCGGTCAGGA
AGTCCCTATTGAGCTGGGCATGGATGCTGACAGGGAATTTCTCCTTATCC
AGTATAGATTTAAGCCAGGCACGGTAGATTATGATGATCCAGCAAGCTAT
GAAATGCAACCCTCGGGGGAAGTCACCATTTATCACCCTCTCAAAGGAGG
GGAGGGAGGGAGGGAGGGGGAAGAGGAAGGCAAGAAGACTTTATCATTTC
ACGGACACAGGCAACCGATTCAGAATCAGGGGAGGGAATTTGTATTGATT
TATGAGGAGGATAGGGGGGTGTTTGAGATGCGGAGATTAGAGGCATTGGT
GCCACATGTGCAGGATGCCAGATCTCATGGGGGGGAGGGCGGGAGGGAGG
GAGGGGGGGGGTTGGTCGCGATGGGAGGAGGAGTTCAAAGGAAAAAATTA
ATGGTGCCTCCTGCACCAGCGATAGTGGGAGCAGTGGCAGCAGCTGAGGT
GGGGGAAAACGGAGGAGGGAAAGCTGAAGGAGAGGAGGAAGGAGATGGGG
GAGAGGAAGGTGGCGGGGTGCGGGCAGCGCCGGCTCAGGCTTTGACGCAG
AAGAAAGTGCAAGCCATGATAAAGCAGCAGAAATTGAAGAAGGAAAGGGA
AAAAAAGAAGGAGGAGAAAGAGAGGGAAAAGAAGGAAAAGGAGGAAGAGA
AGAAGATGGTAAAGGAAGAGGAGAAGCTGAGGAAGAAGGAGGAGAAGGTG
CAAGAGAAAAAGGAAAGGAAAGCTTACAAGGTGAATGCGAAGGATGTCAA
GAAGAAGGAGGGCACGGACGCCAGCAAGGACGGAGGAAGAAGGGGGGAAG
AAGAAGAAGATGGCTCGGTTTCGTCTTTATCAGTGATGGTAGGGAAGAAG
TGCGGGCGTCCACCTGGCAGCGGGACGAAGGCCGCAGCTGCAGCAGCAGC
AGCATCATCACCAGCAGCAACTGCGGCAGTGAAGGACGGTGAAAAAGACC
GAGGAGGAGAGGGAAAAGATGAAGAGACGAAGATGGAGGAGGAGGAAGGA
GAGGAGGAGAGCATGGAAATAGAGGATGAGTCGGAGCAGAAGCAGGAAGA
GGAGCAACGTCAAATGGACGCGCGAGGGAAGCAGCAGCAGCAGCAGCACC
AGCAGGCGCAATTAGAAAAGGAGGAGGAAAATAAGAAAGAGACCGAGGAG
AAGCCGAAGAAGAAGCTGACCATCAACCTTAGTGCACCTTTCGCTACGGT
GCGAGCACCAGTAGCAGCACCCGAAAAAAGAAAGGGACATTGGAGGGAGG
GAGGGGAAGGGGGAGAGGAAGGGGAAGGAGGAGGAGGAGGAGGAGGAGGA
GAGGAAGCGATGGTGCCCAAAAGACGTGGTCGTCCGCCTGGCAGTGGCAA
AAAAGCGACAGCAGTCCGAGAAGGGGGGGGGGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGCCCAGCAGCCGGAACAGCAGCAGCAGCAGCAGCACGTCCC
AGGAAACGAGGGCGGCCTCCAGGGAGTGGGAAGAAGAAGGACGAGGTGGG
CAAAATAGGAGTGAAAAATGAGGCGGAGGCAGTTACAGCAGCAGTAGCGG
AGGAGGAGGCAGAAGCAGCGGTGCTTGCATTGCAGGCTTTGGGGGGGGTT
AAGGAGGGGGAGGGAACGGGGCAAGAAATGGATGGGGAAGTGGTGAAAAA
GCAACGGAATGGCAGCAAGTGAGGAAGGGTATAAAGAATCTAATTAACGC
GACTTCCGC
back to top

protein sequence of NO19G02290.1

>NO19G02290.1-protein ID=NO19G02290.1-protein|Name=NO19G02290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=574bp
MASSNSGSSSPWPAGQEVPIELGMDADREFLLIQYRFKPGTVDYDDPASY
EMQPSGEVTIYHPLKGGEGGREGEEEGKKTLSFHGHRQPIQNQGREFVLI
YEEDRGVFEMRRLEALVPHVQDARSHGGEGGREGGGGLVAMGGGVQRKKL
MVPPAPAIVGAVAAAEVGENGGGKAEGEEEGDGGEEGGGVRAAPAQALTQ
KKVQAMIKQQKLKKEREKKKEEKEREKKEKEEEKKMVKEEEKLRKKEEKV
QEKKERKAYKVNAKDVKKKEGTDASKDGGRRGEEEEDGSVSSLSVMVGKK
CGRPPGSGTKAAAAAAAASSPAATAAVKDGEKDRGGEGKDEETKMEEEEG
EEESMEIEDESEQKQEEEQRQMDARGKQQQQQHQQAQLEKEEENKKETEE
KPKKKLTINLSAPFATVRAPVAAPEKRKGHWREGGEGGEEGEGGGGGGGG
EEAMVPKRRGRPPGSGKKATAVREGGGGGGGGGGGGGPAAGTAAAAAARP
RKRGRPPGSGKKKDEVGKIGVKNEAEAVTAAVAEEEAEAAVLALQALGGV
KEGEGTGQEMDGEVVKKQRNGSK*
back to top

mRNA from alignment at chr19:656196..658030+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02290.1 ID=NO19G02290.1|Name=NO19G02290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1835bp|location=Sequence derived from alignment at chr19:656196..658030+ (Nannochloropsis oceanica)
ATGGCCAGTAGCAATAGCGGTAGCTCATCCCCGTGGCCCGCCGGTCAGGA
AGTCCCTATTGAGCTGGGCATGGATGCTGGTACGTCGTGCCCCTCCCTCC
CTTCTTCCTTTCATTCATACTTCCAACCCCCTCACCGTCTTAACCAAATA
CACAGACAGGGAATTTCTCCTTATCCAGTATAGATTTAAGCCAGGCACGG
TAGATTATGATGATCCAGCAAGCTATGAAATGCAACCCTCGGGGGAAGTC
ACCATTTATCACCCTCTCAAAGGAGGGGAGGGAGGGAGGGAGGGGGAAGA
GGAAGGCAAGAAGACTTTATCATTTCACGGACACAGGCAACCGATTCAGA
ATCAGGGGAGGGAATTTGTATTGATTTATGAGGAGGATAGGGGGGTGTTT
GAGATGCGGAGATTAGAGGCATTGGTGCCACATGTGCAGGATGCCAGATC
TCATGGGGGGGAGGGCGGGAGGGAGGGAGGGGGGGGGTTGGTCGCGATGG
GAGGAGGAGTTCAAAGGAAAAAATTAATGGTGCCTCCTGCACCAGCGATA
GTGGGAGCAGTGGCAGCAGCTGAGGTGGGGGAAAACGGAGGAGGGAAAGC
TGAAGGAGAGGAGGAAGGAGATGGGGGAGAGGAAGGTGGCGGGGTGCGGG
CAGCGCCGGCTCAGGCTTTGACGCAGAAGAAAGTGCAAGCCATGATAAAG
CAGCAGAAATTGAAGAAGGAAAGGGAAAAAAAGAAGGAGGAGAAAGAGAG
GGAAAAGAAGGAAAAGGAGGAAGAGAAGAAGATGGTAAAGGAAGAGGAGA
AGCTGAGGAAGAAGGAGGAGAAGGTGCAAGAGAAAAAGGAAAGGAAAGCT
TACAAGGTGAATGCGAAGGATGTCAAGAAGAAGGAGGGCACGGACGCCAG
CAAGGACGGAGGAAGAAGGGGGGAAGAAGAAGAAGATGGCTCGGTTTCGT
CTTTATCAGTGATGGTAGGGAAGAAGTGCGGGCGTCCACCTGGCAGCGGG
ACGAAGGCCGCAGCTGCAGCAGCAGCAGCATCATCACCAGCAGCAACTGC
GGCAGTGAAGGACGGTGAAAAAGACCGAGGAGGAGAGGGAAAAGATGAAG
AGACGAAGATGGAGGAGGAGGAAGGAGAGGAGGAGAGCATGGAAATAGAG
GATGAGTCGGAGCAGAAGCAGGAAGAGGAGCAACGTCAAATGGACGCGCG
AGGGAAGCAGCAGCAGCAGCAGCACCAGCAGGCGCAATTAGAAAAGGAGG
AGGAAAATAAGAAAGAGACCGAGGAGAAGCCGAAGAAGAAGCTGACCATC
AACCTTAGTGCACCTTTCGCTACGGTGCGAGCACCAGTAGCAGCACCCGA
AAAAAGAAAGGGACATTGGAGGGAGGGAGGGGAAGGGGGAGAGGAAGGGG
AAGGAGGAGGAGGAGGAGGAGGAGGAGAGGAAGCGATGGTGCCCAAAAGA
CGTGGTCGTCCGCCTGGCAGTGGCAAAAAAGCGACAGCAGTCCGAGAAGG
GGGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCCCAGCAGCCGGAA
CAGCAGCAGCAGCAGCAGCACGTCCCAGGAAACGAGGGCGGCCTCCAGGG
AGTGGGAAGAAGAAGGACGAGGTGGGCAAAATAGGAGTGAAAAATGAGGC
GGAGGCAGTTACAGCAGCAGTAGCGGAGGAGGAGGCAGAAGCAGCGGTGC
TTGCATTGCAGGCTTTGGGGGGGGTTAAGGAGGGGGAGGGAACGGGGCAA
GAAATGGATGGGGAAGTGGTGAAAAAGCAACGGAATGGCAGCAAGTGAGG
AAGGGTATAAAGAATCTAATTAACGCGACTTCCGC
back to top

Coding sequence (CDS) from alignment at chr19:656196..658030+

>NO19G02290.1 ID=NO19G02290.1|Name=NO19G02290.1|organism=Nannochloropsis oceanica|type=CDS|length=1722bp|location=Sequence derived from alignment at chr19:656196..658030+ (Nannochloropsis oceanica)
ATGGCCAGTAGCAATAGCGGTAGCTCATCCCCGTGGCCCGCCGGTCAGGA
AGTCCCTATTGAGCTGGGCATGGATGCTGACAGGGAATTTCTCCTTATCC
AGTATAGATTTAAGCCAGGCACGGTAGATTATGATGATCCAGCAAGCTAT
GAAATGCAACCCTCGGGGGAAGTCACCATTTATCACCCTCTCAAAGGAGG
GGAGGGAGGGAGGGAGGGGGAAGAGGAAGGCAAGAAGACTTTATCATTTC
ACGGACACAGGCAACCGATTCAGAATCAGGGGAGGGAATTTGTATTGATT
TATGAGGAGGATAGGGGGGTGTTTGAGATGCGGAGATTAGAGGCATTGGT
GCCACATGTGCAGGATGCCAGATCTCATGGGGGGGAGGGCGGGAGGGAGG
GAGGGGGGGGGTTGGTCGCGATGGGAGGAGGAGTTCAAAGGAAAAAATTA
ATGGTGCCTCCTGCACCAGCGATAGTGGGAGCAGTGGCAGCAGCTGAGGT
GGGGGAAAACGGAGGAGGGAAAGCTGAAGGAGAGGAGGAAGGAGATGGGG
GAGAGGAAGGTGGCGGGGTGCGGGCAGCGCCGGCTCAGGCTTTGACGCAG
AAGAAAGTGCAAGCCATGATAAAGCAGCAGAAATTGAAGAAGGAAAGGGA
AAAAAAGAAGGAGGAGAAAGAGAGGGAAAAGAAGGAAAAGGAGGAAGAGA
AGAAGATGGTAAAGGAAGAGGAGAAGCTGAGGAAGAAGGAGGAGAAGGTG
CAAGAGAAAAAGGAAAGGAAAGCTTACAAGGTGAATGCGAAGGATGTCAA
GAAGAAGGAGGGCACGGACGCCAGCAAGGACGGAGGAAGAAGGGGGGAAG
AAGAAGAAGATGGCTCGGTTTCGTCTTTATCAGTGATGGTAGGGAAGAAG
TGCGGGCGTCCACCTGGCAGCGGGACGAAGGCCGCAGCTGCAGCAGCAGC
AGCATCATCACCAGCAGCAACTGCGGCAGTGAAGGACGGTGAAAAAGACC
GAGGAGGAGAGGGAAAAGATGAAGAGACGAAGATGGAGGAGGAGGAAGGA
GAGGAGGAGAGCATGGAAATAGAGGATGAGTCGGAGCAGAAGCAGGAAGA
GGAGCAACGTCAAATGGACGCGCGAGGGAAGCAGCAGCAGCAGCAGCACC
AGCAGGCGCAATTAGAAAAGGAGGAGGAAAATAAGAAAGAGACCGAGGAG
AAGCCGAAGAAGAAGCTGACCATCAACCTTAGTGCACCTTTCGCTACGGT
GCGAGCACCAGTAGCAGCACCCGAAAAAAGAAAGGGACATTGGAGGGAGG
GAGGGGAAGGGGGAGAGGAAGGGGAAGGAGGAGGAGGAGGAGGAGGAGGA
GAGGAAGCGATGGTGCCCAAAAGACGTGGTCGTCCGCCTGGCAGTGGCAA
AAAAGCGACAGCAGTCCGAGAAGGGGGGGGGGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGCCCAGCAGCCGGAACAGCAGCAGCAGCAGCAGCACGTCCC
AGGAAACGAGGGCGGCCTCCAGGGAGTGGGAAGAAGAAGGACGAGGTGGG
CAAAATAGGAGTGAAAAATGAGGCGGAGGCAGTTACAGCAGCAGTAGCGG
AGGAGGAGGCAGAAGCAGCGGTGCTTGCATTGCAGGCTTTGGGGGGGGTT
AAGGAGGGGGAGGGAACGGGGCAAGAAATGGATGGGGAAGTGGTGAAAAA
GCAACGGAATGGCAGCAAGTGA
back to top
Synonyms
Publications