NO19G02270, NO19G02270 (gene) Nannochloropsis oceanica

Overview
NameNO19G02270
Unique NameNO19G02270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2578
Alignment locationchr19:650742..653319 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:650742..653319 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR035965PAS-like_dom_sf
IPR013767PAS_fold
IPR000014PAS
Homology
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BLAST of NO19G02270 vs. NCBI_GenBank
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 142.1 bits (357), Expect = 5.000e-30
Identity = 81/177 (45.76%), Postives = 113/177 (63.84%), Query Frame = 0 
Query:  371 KGKRARRADLNGFTAEEKQERRKARARLYSAQARERQECEMKELRVMVEALSAYKLIVEEAPDMMCVLSAEREEKILYANSAFARLLGLVPASLLGRRLGEMVHAEDLKEVLAAFTTTLLSTDTVAKTTCRLKSCSVEGERD-----RGGTMEEKYVKVGLGLRKGTQGLLAIIRPE 543
            +GKRARR DL+G+T  EKQERRK RAR+YSAQ RERQ  E+  LR  V+ALS YKL+V+EAP++  VLSA+ + K+LYAN+AFAR     P S +GR + E+VH ED + V+ AF + ++  + V +  CRL +   +G ++                    +R+GTQGL+ +IR E
Sbjct:  276 EGKRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAFASAVMEKEEVGRARCRLGTSKGQGSKEXXXXXXXXXXXXXXXXXXXXVRRGTQGLILVIRRE 452
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BLAST of NO19G02270 vs. NCBI_GenBank
Match: EWM23655.1 (pas pac sensor hybrid histidine kinase [Nannochloropsis gaditana])

HSP 1 Score: 87.8 bits (216), Expect = 1.100e-13
Identity = 70/178 (39.33%), Postives = 93/178 (52.25%), Query Frame = 0 
Query:  371 KGKRARRADLNGFTAEEKQERRKARARLYSAQARERQECEMKELRVMVEALSAYKLIVEEAPDMMCVLSAEREEKILYANSAFARLLGLVPAS-----LLGRRLGEMVHAEDLKEVLAAFTTTLLSTDTVAKTTCR--LKSCSVEGERDRGGTMEEKYVKVGLGLRKGTQGLLAIIRP 542
            K +RA R D +  T EE+ + +KARAR YSA ARERQ  + + LR  V  L  YK +VE APD M +LS + + +IL+AN    +L G +P       L GR L E +   D   + AA    +L    V    C   L S SV     RG    ++ +KV + LR   QGL+ IIRP
Sbjct:  324 KKRRAPRMDFSKLTPEEQIQWKKARARKYSAMARERQSKKEEALRAEVGRLQVYKTLVEAAPDAMLLLSNDAQGRILFANKESEKLFGFIPKGGAEKPLPGRCLWEWLDVTDRVAIFAAIGKVVLCKHLVRAVPCTVWLPSGSVPKHDARG---PQQSLKVLITLRSSAQGLILIIRP 498
The following BLAST results are available for this feature:
BLAST of NO19G02270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23721.15.000e-3045.76conserved unknown protein [Nannochloropsis gaditan... [more]
EWM23655.11.100e-1339.33pas pac sensor hybrid histidine kinase [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004566NSK004566Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02270.1NO19G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632387gene_7627Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100688g2gene6735Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02270.1NO19G02270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02270 ID=NO19G02270|Name=NO19G02270|organism=Nannochloropsis oceanica|type=gene|length=2578bp
CTCAACTCGAATCAAGACAACTTGCCTTATAATGCTCATTATGCCACGTT
TGTCCATCGGGCAATTTCCTTTGGCATCCTCCAACTTGGCCACTGTCCTC
TTCATGTAATTTCCAATCTATAGGACCGCATGGTCTCCTAAATGCTCGCG
ACCTCGTCGGTGTAGACATGCATATCATATCAATAAGTATGCTTAATCGT
CACTTTCAGgtaattaccccgatcatttcggcagacaaatgctaccatta
cgccgcgctcctagagccccggtgcatcgcacagtgcacagtcattacta
taattttttatttgtagggactgcctgtttgtggatgtccacatgcacgc
ctctgtggttgtaagctggggtacccagggtatactaaatgtagttacat
ttagtgctatgttatatcacaaagtcagcgataaggctatgctatgacaa
acgcccgtaacaaacttagtaactggagagtaacagatgttattctgaaa
gcatttgtcaacgatcaattaatatctcccccctcccccctttcccccat
tccctcaaaagTATGGCTTCCAGCCATTCGGTTTTTAAAGACCTGCTCGC
GGCCGCCGCGCTACTAGCCCCAAGACATGGCCCTTCACCTGTTCAAATGC
GCTCATCCCCAGGTTTATCGGTACCGTTGGAACCCGTGCACCCCGCTTCG
TCTTTGGCAACCACCGAATTGGACCGCAGCCTCCGCCCCCATCGGCACCT
TGCTTCGGCCCCGGCAGCGGCATGTGGAATCCCCAGCAACTCCGGGGATC
GTGAAGGATTAGACGCCAGTGAATGCAACGCAACAGCACTGCGGACTACC
ATTTCGTCCGCGCAGCATCCAGGGCGACTGGCAACCCCTGTCAATGCCCA
ACAAGCCCAAGAACCCACTGATTCCAAAGACGGGCCTCACTCACAGCCCT
GGCAGCAGCCTTTTCCCCTCAAGCAACACATCTCGAGGTCAGACTTGCAC
CAGCATCAGCACCAGCAGCACCAGCAAAAACAACAAACTCAACAACAAAC
ACAACAGCTACCCCTTTCCCACCACGCCGTCCCCCCCCCTGCCGCCTTCG
CCCACTGCTCCGTCTATCCTCCCTCCGTTTCTACCGCTTCTTCCTTCGCC
AACACAACACAAGCTGCTGCCGGACTGCAGGCTTTCCCTGTCCGCTCGTC
CATCACTTCCTGCATCCCCTCCTCGTCGTCCTCCTCCTCCTTCTCCCCCT
CCTCCTGCTCCACCGCTTCCATCTCCCCCCGCTCTGCCTCCTTCATCTCT
TCCCTCAAAGTCAGCACCTTGGCCTCGTCGATCCCCCACCCACACAGCGA
CACTAACATGAAGGCACAGCACCACGTTCGTCCCTCCTCTTCCTCCCTCC
TTATCCCTGTCGGCGGCCTTCACCCCCATCAGGTGTCCAACCCGCAGCCA
CCCCCGCGCTCCATCCCTTCCTCCCCTCCTTGCTCCAACTCTGGCCCTTT
CCGAGTAGGCCTTTTGCCGGGTATTCCCCTTGAGAGCCAGCTCCACGGTC
ATCACCTCGATCCCTTCTCGGGCACTAAAACCACCAACAGCAGCAGCAAC
AACAGCAGCAGCAGCAGCAGCAACAGCTGCGAGGGTGGGGAGGAGGATAA
ATTTGGATGGCGGGCGAGCAGGAAGGGAAAGAGGGCCCGAAGGGCGGACC
TGAACGGCTTCACTGCCGAGGAGAAACAAGAAAGAAGAAAGGCGCGGGCG
AGATTGTACAGCGCCCAGGCACGGGAGAGACAGGAGTGTGAGATGAAGGA
GTTGAGGGTGATGGTGGAGGCTTTGTCCGCCTACAAATTGATTGTGGAGG
AAGCCCCGGATATGATGTGTGTCCTCTCGGCTGAGAGGGAGGAAAAAATC
TTGTACGCCAACTCAGCCTTTGCGCGCTTGCTGGGGCTAGTGCCTGCGAG
CTTGCTAGGGAGGAGATTGGGAGAGATGGTCCACGCAGAGGATTTGAAGG
AGGTGCTCGCGGCGTTCACCACTACCCTGTTAAGCACAGATACGGTGGCC
AAGACCACCTGCCGATTAAAGTCTTGCTCCGTGGAGGGGGAAAGAGACAG
AGGAGGAACGATGGAGGAGAAATACGTCAAAGTAGGCCTGGGGCTTCGGA
AGGGAACGCAGGGGTTGCTGGCCATCATTCGTCCGGAAGGCTGAGGGAGG
GAGGGAGGGAGGTGGGGAGGGACTGACGCTGATGCAAGGAGGAAAGGTGG
GGGATGAGGGAGGGAGAACGGGCTCGAGGTCTGTTTCCTGATTACTATAC
ATATGTGGTTAATATAAAGAATGAGAAAAGGGATCGAGCGGGGAGGGAGT
GAGGGAGGGAGGGAGGGAGGCAAGAACAACGGTGTGCGCAAAAAAGACAT
AAACTCAAACTTAAGGTATTGGGTTAGCGCTAGGGAGAGAACAAGAAGCA
ATGCAACCAAAACTGCAAATAAAATAATAAGACAAAATGAAGTGTCAATA
AGAACAAGAACAAGAAGAACATAGTCAAGAATCCGAGGAAAAAGCAACAA
CAACTACGACGGCGACGACGACGAAAAC
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protein sequence of NO19G02270.1

>NO19G02270.1-protein ID=NO19G02270.1-protein|Name=NO19G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=544bp
MASSHSVFKDLLAAAALLAPRHGPSPVQMRSSPGLSVPLEPVHPASSLAT
TELDRSLRPHRHLASAPAAACGIPSNSGDREGLDASECNATALRTTISSA
QHPGRLATPVNAQQAQEPTDSKDGPHSQPWQQPFPLKQHISRSDLHQHQH
QQHQQKQQTQQQTQQLPLSHHAVPPPAAFAHCSVYPPSVSTASSFANTTQ
AAAGLQAFPVRSSITSCIPSSSSSSSFSPSSCSTASISPRSASFISSLKV
STLASSIPHPHSDTNMKAQHHVRPSSSSLLIPVGGLHPHQVSNPQPPPRS
IPSSPPCSNSGPFRVGLLPGIPLESQLHGHHLDPFSGTKTTNSSSNNSSS
SSSNSCEGGEEDKFGWRASRKGKRARRADLNGFTAEEKQERRKARARLYS
AQARERQECEMKELRVMVEALSAYKLIVEEAPDMMCVLSAEREEKILYAN
SAFARLLGLVPASLLGRRLGEMVHAEDLKEVLAAFTTTLLSTDTVAKTTC
RLKSCSVEGERDRGGTMEEKYVKVGLGLRKGTQGLLAIIRPEG*
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Synonyms
Publications