NO19G02270.1, NO19G02270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02270.1
Unique NameNO19G02270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2226
Alignment locationchr19:650742..653319 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:650742..653319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02270.1 vs.
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 154.8 bits (390), Expect = 7.500e-34
Identity = 86/177 (48.59%), Postives = 119/177 (67.23%), Query Frame = 0 
Query:  371 KGKRARRADLNGFTAEEKQERRKARARLYSAQARERQECEMKELRVMVEALSAYKLIVEEAPDMMCVLSAEREEKILYANSAFARLLGLVPASLLGRRLGEMVHAEDLKEVLAAFTTTLLSTDTVAKTTCRLKSCSVEGERDRGGTMEE-----KYVKVGLGLRKGTQGLLAIIRPE 543
            +GKRARR DL+G+T  EKQERRK RAR+YSAQ RERQ  E+  LR  V+ALS YKL+V+EAP++  VLSA+ + K+LYAN+AFAR     P S +GR + E+VH ED + V+ AF + ++  + V +  CRL +   +G ++ GG   E       V V + +R+GTQGL+ +IR E
Sbjct:  276 EGKRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAFASAVMEKEEVGRARCRLGTSKGQGSKEAGGAGREVPVAVSEVPVAVSVRRGTQGLILVIRRE 452
The following BLAST results are available for this feature:
BLAST of NO19G02270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23721.17.500e-3448.59conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02270NO19G02270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02270.1NO19G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02270.1.cds1NO19G02270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02270.1 ID=NO19G02270.1|Name=NO19G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp
CTCAACTCGAATCAAGACAACTTGCCTTATAATGCTCATTATGCCACGTT
TGTCCATCGGGCAATTTCCTTTGGCATCCTCCAACTTGGCCACTGTCCTC
TTCATGTAATTTCCAATCTATAGGACCGCATGGTCTCCTAAATGCTCGCG
ACCTCGTCGGTGTAGACATGCATATCATATCAATAAGTATGCTTAATCGT
CACTTTCAGTATGGCTTCCAGCCATTCGGTTTTTAAAGACCTGCTCGCGG
CCGCCGCGCTACTAGCCCCAAGACATGGCCCTTCACCTGTTCAAATGCGC
TCATCCCCAGGTTTATCGGTACCGTTGGAACCCGTGCACCCCGCTTCGTC
TTTGGCAACCACCGAATTGGACCGCAGCCTCCGCCCCCATCGGCACCTTG
CTTCGGCCCCGGCAGCGGCATGTGGAATCCCCAGCAACTCCGGGGATCGT
GAAGGATTAGACGCCAGTGAATGCAACGCAACAGCACTGCGGACTACCAT
TTCGTCCGCGCAGCATCCAGGGCGACTGGCAACCCCTGTCAATGCCCAAC
AAGCCCAAGAACCCACTGATTCCAAAGACGGGCCTCACTCACAGCCCTGG
CAGCAGCCTTTTCCCCTCAAGCAACACATCTCGAGGTCAGACTTGCACCA
GCATCAGCACCAGCAGCACCAGCAAAAACAACAAACTCAACAACAAACAC
AACAGCTACCCCTTTCCCACCACGCCGTCCCCCCCCCTGCCGCCTTCGCC
CACTGCTCCGTCTATCCTCCCTCCGTTTCTACCGCTTCTTCCTTCGCCAA
CACAACACAAGCTGCTGCCGGACTGCAGGCTTTCCCTGTCCGCTCGTCCA
TCACTTCCTGCATCCCCTCCTCGTCGTCCTCCTCCTCCTTCTCCCCCTCC
TCCTGCTCCACCGCTTCCATCTCCCCCCGCTCTGCCTCCTTCATCTCTTC
CCTCAAAGTCAGCACCTTGGCCTCGTCGATCCCCCACCCACACAGCGACA
CTAACATGAAGGCACAGCACCACGTTCGTCCCTCCTCTTCCTCCCTCCTT
ATCCCTGTCGGCGGCCTTCACCCCCATCAGGTGTCCAACCCGCAGCCACC
CCCGCGCTCCATCCCTTCCTCCCCTCCTTGCTCCAACTCTGGCCCTTTCC
GAGTAGGCCTTTTGCCGGGTATTCCCCTTGAGAGCCAGCTCCACGGTCAT
CACCTCGATCCCTTCTCGGGCACTAAAACCACCAACAGCAGCAGCAACAA
CAGCAGCAGCAGCAGCAGCAACAGCTGCGAGGGTGGGGAGGAGGATAAAT
TTGGATGGCGGGCGAGCAGGAAGGGAAAGAGGGCCCGAAGGGCGGACCTG
AACGGCTTCACTGCCGAGGAGAAACAAGAAAGAAGAAAGGCGCGGGCGAG
ATTGTACAGCGCCCAGGCACGGGAGAGACAGGAGTGTGAGATGAAGGAGT
TGAGGGTGATGGTGGAGGCTTTGTCCGCCTACAAATTGATTGTGGAGGAA
GCCCCGGATATGATGTGTGTCCTCTCGGCTGAGAGGGAGGAAAAAATCTT
GTACGCCAACTCAGCCTTTGCGCGCTTGCTGGGGCTAGTGCCTGCGAGCT
TGCTAGGGAGGAGATTGGGAGAGATGGTCCACGCAGAGGATTTGAAGGAG
GTGCTCGCGGCGTTCACCACTACCCTGTTAAGCACAGATACGGTGGCCAA
GACCACCTGCCGATTAAAGTCTTGCTCCGTGGAGGGGGAAAGAGACAGAG
GAGGAACGATGGAGGAGAAATACGTCAAAGTAGGCCTGGGGCTTCGGAAG
GGAACGCAGGGGTTGCTGGCCATCATTCGTCCGGAAGGCTGAGGGAGGGA
GGGAGGGAGGTGGGGAGGGACTGACGCTGATGCAAGGAGGAAAGGTGGGG
GATGAGGGAGGGAGAACGGGCTCGAGGTCTGTTTCCTGATTACTATACAT
ATGTGGTTAATATAAAGAATGAGAAAAGGGATCGAGCGGGGAGGGAGTGA
GGGAGGGAGGGAGGGAGGCAAGAACAACGGTGTGCGCAAAAAAGACATAA
ACTCAAACTTAAGGTATTGGGTTAGCGCTAGGGAGAGAACAAGAAGCAAT
GCAACCAAAACTGCAAATAAAATAATAAGACAAAATGAAGTGTCAATAAG
AACAAGAACAAGAAGAACATAGTCAAGAATCCGAGGAAAAAGCAACAACA
ACTACGACGGCGACGACGACGAAAAC
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protein sequence of NO19G02270.1

>NO19G02270.1-protein ID=NO19G02270.1-protein|Name=NO19G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=544bp
MASSHSVFKDLLAAAALLAPRHGPSPVQMRSSPGLSVPLEPVHPASSLAT
TELDRSLRPHRHLASAPAAACGIPSNSGDREGLDASECNATALRTTISSA
QHPGRLATPVNAQQAQEPTDSKDGPHSQPWQQPFPLKQHISRSDLHQHQH
QQHQQKQQTQQQTQQLPLSHHAVPPPAAFAHCSVYPPSVSTASSFANTTQ
AAAGLQAFPVRSSITSCIPSSSSSSSFSPSSCSTASISPRSASFISSLKV
STLASSIPHPHSDTNMKAQHHVRPSSSSLLIPVGGLHPHQVSNPQPPPRS
IPSSPPCSNSGPFRVGLLPGIPLESQLHGHHLDPFSGTKTTNSSSNNSSS
SSSNSCEGGEEDKFGWRASRKGKRARRADLNGFTAEEKQERRKARARLYS
AQARERQECEMKELRVMVEALSAYKLIVEEAPDMMCVLSAEREEKILYAN
SAFARLLGLVPASLLGRRLGEMVHAEDLKEVLAAFTTTLLSTDTVAKTTC
RLKSCSVEGERDRGGTMEEKYVKVGLGLRKGTQGLLAIIRPEG*
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mRNA from alignment at chr19:650742..653319+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02270.1 ID=NO19G02270.1|Name=NO19G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2578bp|location=Sequence derived from alignment at chr19:650742..653319+ (Nannochloropsis oceanica)
CTCAACTCGAATCAAGACAACTTGCCTTATAATGCTCATTATGCCACGTT
TGTCCATCGGGCAATTTCCTTTGGCATCCTCCAACTTGGCCACTGTCCTC
TTCATGTAATTTCCAATCTATAGGACCGCATGGTCTCCTAAATGCTCGCG
ACCTCGTCGGTGTAGACATGCATATCATATCAATAAGTATGCTTAATCGT
CACTTTCAGGTAATTACCCCGATCATTTCGGCAGACAAATGCTACCATTA
CGCCGCGCTCCTAGAGCCCCGGTGCATCGCACAGTGCACAGTCATTACTA
TAATTTTTTATTTGTAGGGACTGCCTGTTTGTGGATGTCCACATGCACGC
CTCTGTGGTTGTAAGCTGGGGTACCCAGGGTATACTAAATGTAGTTACAT
TTAGTGCTATGTTATATCACAAAGTCAGCGATAAGGCTATGCTATGACAA
ACGCCCGTAACAAACTTAGTAACTGGAGAGTAACAGATGTTATTCTGAAA
GCATTTGTCAACGATCAATTAATATCTCCCCCCTCCCCCCTTTCCCCCAT
TCCCTCAAAAGTATGGCTTCCAGCCATTCGGTTTTTAAAGACCTGCTCGC
GGCCGCCGCGCTACTAGCCCCAAGACATGGCCCTTCACCTGTTCAAATGC
GCTCATCCCCAGGTTTATCGGTACCGTTGGAACCCGTGCACCCCGCTTCG
TCTTTGGCAACCACCGAATTGGACCGCAGCCTCCGCCCCCATCGGCACCT
TGCTTCGGCCCCGGCAGCGGCATGTGGAATCCCCAGCAACTCCGGGGATC
GTGAAGGATTAGACGCCAGTGAATGCAACGCAACAGCACTGCGGACTACC
ATTTCGTCCGCGCAGCATCCAGGGCGACTGGCAACCCCTGTCAATGCCCA
ACAAGCCCAAGAACCCACTGATTCCAAAGACGGGCCTCACTCACAGCCCT
GGCAGCAGCCTTTTCCCCTCAAGCAACACATCTCGAGGTCAGACTTGCAC
CAGCATCAGCACCAGCAGCACCAGCAAAAACAACAAACTCAACAACAAAC
ACAACAGCTACCCCTTTCCCACCACGCCGTCCCCCCCCCTGCCGCCTTCG
CCCACTGCTCCGTCTATCCTCCCTCCGTTTCTACCGCTTCTTCCTTCGCC
AACACAACACAAGCTGCTGCCGGACTGCAGGCTTTCCCTGTCCGCTCGTC
CATCACTTCCTGCATCCCCTCCTCGTCGTCCTCCTCCTCCTTCTCCCCCT
CCTCCTGCTCCACCGCTTCCATCTCCCCCCGCTCTGCCTCCTTCATCTCT
TCCCTCAAAGTCAGCACCTTGGCCTCGTCGATCCCCCACCCACACAGCGA
CACTAACATGAAGGCACAGCACCACGTTCGTCCCTCCTCTTCCTCCCTCC
TTATCCCTGTCGGCGGCCTTCACCCCCATCAGGTGTCCAACCCGCAGCCA
CCCCCGCGCTCCATCCCTTCCTCCCCTCCTTGCTCCAACTCTGGCCCTTT
CCGAGTAGGCCTTTTGCCGGGTATTCCCCTTGAGAGCCAGCTCCACGGTC
ATCACCTCGATCCCTTCTCGGGCACTAAAACCACCAACAGCAGCAGCAAC
AACAGCAGCAGCAGCAGCAGCAACAGCTGCGAGGGTGGGGAGGAGGATAA
ATTTGGATGGCGGGCGAGCAGGAAGGGAAAGAGGGCCCGAAGGGCGGACC
TGAACGGCTTCACTGCCGAGGAGAAACAAGAAAGAAGAAAGGCGCGGGCG
AGATTGTACAGCGCCCAGGCACGGGAGAGACAGGAGTGTGAGATGAAGGA
GTTGAGGGTGATGGTGGAGGCTTTGTCCGCCTACAAATTGATTGTGGAGG
AAGCCCCGGATATGATGTGTGTCCTCTCGGCTGAGAGGGAGGAAAAAATC
TTGTACGCCAACTCAGCCTTTGCGCGCTTGCTGGGGCTAGTGCCTGCGAG
CTTGCTAGGGAGGAGATTGGGAGAGATGGTCCACGCAGAGGATTTGAAGG
AGGTGCTCGCGGCGTTCACCACTACCCTGTTAAGCACAGATACGGTGGCC
AAGACCACCTGCCGATTAAAGTCTTGCTCCGTGGAGGGGGAAAGAGACAG
AGGAGGAACGATGGAGGAGAAATACGTCAAAGTAGGCCTGGGGCTTCGGA
AGGGAACGCAGGGGTTGCTGGCCATCATTCGTCCGGAAGGCTGAGGGAGG
GAGGGAGGGAGGTGGGGAGGGACTGACGCTGATGCAAGGAGGAAAGGTGG
GGGATGAGGGAGGGAGAACGGGCTCGAGGTCTGTTTCCTGATTACTATAC
ATATGTGGTTAATATAAAGAATGAGAAAAGGGATCGAGCGGGGAGGGAGT
GAGGGAGGGAGGGAGGGAGGCAAGAACAACGGTGTGCGCAAAAAAGACAT
AAACTCAAACTTAAGGTATTGGGTTAGCGCTAGGGAGAGAACAAGAAGCA
ATGCAACCAAAACTGCAAATAAAATAATAAGACAAAATGAAGTGTCAATA
AGAACAAGAACAAGAAGAACATAGTCAAGAATCCGAGGAAAAAGCAACAA
CAACTACGACGGCGACGACGACGAAAAC
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Coding sequence (CDS) from alignment at chr19:650742..653319+

>NO19G02270.1 ID=NO19G02270.1|Name=NO19G02270.1|organism=Nannochloropsis oceanica|type=CDS|length=1632bp|location=Sequence derived from alignment at chr19:650742..653319+ (Nannochloropsis oceanica)
ATGGCTTCCAGCCATTCGGTTTTTAAAGACCTGCTCGCGGCCGCCGCGCT
ACTAGCCCCAAGACATGGCCCTTCACCTGTTCAAATGCGCTCATCCCCAG
GTTTATCGGTACCGTTGGAACCCGTGCACCCCGCTTCGTCTTTGGCAACC
ACCGAATTGGACCGCAGCCTCCGCCCCCATCGGCACCTTGCTTCGGCCCC
GGCAGCGGCATGTGGAATCCCCAGCAACTCCGGGGATCGTGAAGGATTAG
ACGCCAGTGAATGCAACGCAACAGCACTGCGGACTACCATTTCGTCCGCG
CAGCATCCAGGGCGACTGGCAACCCCTGTCAATGCCCAACAAGCCCAAGA
ACCCACTGATTCCAAAGACGGGCCTCACTCACAGCCCTGGCAGCAGCCTT
TTCCCCTCAAGCAACACATCTCGAGGTCAGACTTGCACCAGCATCAGCAC
CAGCAGCACCAGCAAAAACAACAAACTCAACAACAAACACAACAGCTACC
CCTTTCCCACCACGCCGTCCCCCCCCCTGCCGCCTTCGCCCACTGCTCCG
TCTATCCTCCCTCCGTTTCTACCGCTTCTTCCTTCGCCAACACAACACAA
GCTGCTGCCGGACTGCAGGCTTTCCCTGTCCGCTCGTCCATCACTTCCTG
CATCCCCTCCTCGTCGTCCTCCTCCTCCTTCTCCCCCTCCTCCTGCTCCA
CCGCTTCCATCTCCCCCCGCTCTGCCTCCTTCATCTCTTCCCTCAAAGTC
AGCACCTTGGCCTCGTCGATCCCCCACCCACACAGCGACACTAACATGAA
GGCACAGCACCACGTTCGTCCCTCCTCTTCCTCCCTCCTTATCCCTGTCG
GCGGCCTTCACCCCCATCAGGTGTCCAACCCGCAGCCACCCCCGCGCTCC
ATCCCTTCCTCCCCTCCTTGCTCCAACTCTGGCCCTTTCCGAGTAGGCCT
TTTGCCGGGTATTCCCCTTGAGAGCCAGCTCCACGGTCATCACCTCGATC
CCTTCTCGGGCACTAAAACCACCAACAGCAGCAGCAACAACAGCAGCAGC
AGCAGCAGCAACAGCTGCGAGGGTGGGGAGGAGGATAAATTTGGATGGCG
GGCGAGCAGGAAGGGAAAGAGGGCCCGAAGGGCGGACCTGAACGGCTTCA
CTGCCGAGGAGAAACAAGAAAGAAGAAAGGCGCGGGCGAGATTGTACAGC
GCCCAGGCACGGGAGAGACAGGAGTGTGAGATGAAGGAGTTGAGGGTGAT
GGTGGAGGCTTTGTCCGCCTACAAATTGATTGTGGAGGAAGCCCCGGATA
TGATGTGTGTCCTCTCGGCTGAGAGGGAGGAAAAAATCTTGTACGCCAAC
TCAGCCTTTGCGCGCTTGCTGGGGCTAGTGCCTGCGAGCTTGCTAGGGAG
GAGATTGGGAGAGATGGTCCACGCAGAGGATTTGAAGGAGGTGCTCGCGG
CGTTCACCACTACCCTGTTAAGCACAGATACGGTGGCCAAGACCACCTGC
CGATTAAAGTCTTGCTCCGTGGAGGGGGAAAGAGACAGAGGAGGAACGAT
GGAGGAGAAATACGTCAAAGTAGGCCTGGGGCTTCGGAAGGGAACGCAGG
GGTTGCTGGCCATCATTCGTCCGGAAGGCTGA
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Synonyms
Publications