NO19G02240, NO19G02240 (gene) Nannochloropsis oceanica

Overview
NameNO19G02240
Unique NameNO19G02240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1283
Alignment locationchr19:638751..640033 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:638751..640033 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO19G02240 vs. NCBI_GenBank
Match: EWM23717.1 (hypothetical protein Naga_101252g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 189.1 bits (479), Expect = 2.600e-44
Identity = 148/335 (44.18%), Postives = 185/335 (55.22%), Query Frame = 0 
Query:   49 NLSSHIYDPSLPPALLIPIGPQCSGKSTLLRRLSARRPPSLPPLLDISIDDHPGLYVPVPMPLFLEGGMDAGREGGI------LIKGKSVAARCLEPAAEECRLVLGYVYGRVGLEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGAKEEWLPLLLGAMTKARKRVVDASAAAVAPTAAAIAAVPSFPPSLSATHYQLFLPHLLSQAIQSSTKRLDIALREGGREGGRARSGAPMAPVAWGNTNSKTGDFKXXXXXXXXXXXRVVFLRWGEEIDKEGGRESLVMRNVWRAAEEGKYIPVKTILMTADRCEALLE--GGREGG 376
            +L   IYD   PP+LLI +GPQC+GK+TLL+ L+  RP   PPL+D++IDD  GLYVP+                        LIKG+++++RC + A  E RLVLGY++G   +E                  XXXXXXXXXXXXXXXXXXXXXX       W+ LLL A+ KAR        A +A T          PP  +A+HYQLFLP LL QAI+ S +RL              RS     PVAWGNTNSK  DFK           RV+F+RWG+E+ KE G+E LV+RNVWRA  EGKY+PV+TI     + +   E  GGR GG
Sbjct:   75 SLQQDIYDLKRPPSLLITVGPQCAGKTTLLKHLNESRPSFAPPLVDVAIDDQAGLYVPLXXXXXXXXXXXXXXXXXXXXXLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENV-----------EQALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWITLLLHALAKAR--------ATIATTTKVDTVATWSPP--AASHYQLFLPDLLPQAIRRSYQRL-------------TRSLCGPGPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYVPVRTIFCGLGKDQGTSERAGGRAGG 375
The following BLAST results are available for this feature:
BLAST of NO19G02240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23717.12.600e-4444.18hypothetical protein Naga_101252g2, partial [Nanno... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02240.1NO19G02240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101252g2gene6738Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02240.1NO19G02240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02240 ID=NO19G02240|Name=NO19G02240|organism=Nannochloropsis oceanica|type=gene|length=1283bp
CCTCTGCCTCCTCCTTGCTCCCGTCCAACTCCTCTTCCTCCTCCTCCTCC
TCCCCATGGTCCTCCTCGCCAGCGTTACACCCGCTTTTCACTCCGCTATT
CTGACACGCCGGCACCATCGATCAAGTCATTGCGTCCTGTACGCAGACAC
CGCGAGCCAGGCAGCAGCAGCAGCAACCTCCGACGACCTCCTCCTGTCTA
ACCTCTCCTCCCACATTTACGACCCCTCCCTCCCTCCCGCCCTCCTCATC
CCCATCGGGCCTCAATGCAGCGGCAAAAGCACCCTATTGCGTCGTTTGAG
TGCCCGCCGTCCTCCTTCACTCCCTCCCTTGCTCGACATCTCTATCGACG
ACCATCCGGGCCTCTACGTCCCGGTGCCCATGCCTCTCTTCCTGGAGGGA
GGAATGGATGCAGGCAGGGAGGGAGGGATACTGATAAAGGGGAAATCAGT
GGCAGCAAGGTGCCTGGAGCCGGCGGCAGAAGAGTGCAGGCTGGTCCTCG
GCTATGTTTACGGGAGGGTGGGGTTGGAGGAAGCGGAGGAGGGCTTGCGA
GCCTTGTCCTCTCCCCTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTC
GTCTGCAGCCTCTGCGAGGACAAGAGAAACGATGGAGACGATGAGGAGTG
GGGAGGGGGCGAAAGAGGAGTGGCTGCCGCTGCTGCTTGGCGCGATGACG
AAGGCGCGAAAGAGGGTTGTCGATGCAAGCGCCGCTGCTGTTGCTCCCAC
TGCTGCTGCAATTGCTGCTGTGCCTTCCTTCCCTCCCTCGCTTTCTGCAA
CCCACTACCAGCTGTTCCTGCCCCACCTTCTCTCCCAGGCGATCCAAAGC
AGCACCAAGAGGTTGGACATCGCGCTGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGCGAGGTCCGGGGCACCCATGGCACCTGTGGCATGGGGAAATACGA
ACAGCAAGACTGGTGACTTCAAGGCGGCCTTGAGGGCGGGAGGGAGGGAG
GGAAGGAGGGTGGTGTTTTTGAGATGGGGCGAGGAGATCGATAAGGAGGG
AGGGAGGGAGAGTTTGGTGATGAGGAATGTGTGGAGGGCAGCAGAGGAGG
GGAAGTACATCCCTGTCAAAACGATTCTAATGACTGCGGATAGGTGCGAG
GCCTTGCTCGAGGGGGGAAGGGAGGGAGGGATGGAGACCTGCTTGGGAGA
GTGGGAATGCGGTTGGATGGGGAAGGGAAGCTGTGTCTGATGGCGGAGGA
GGGAGGGAGGAATGGAGGGAAGGGGAAGGAGGG
back to top

protein sequence of NO19G02240.1

>NO19G02240.1-protein ID=NO19G02240.1-protein|Name=NO19G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MVLLASVTPAFHSAILTRRHHRSSHCVLYADTASQAAAAATSDDLLLSNL
SSHIYDPSLPPALLIPIGPQCSGKSTLLRRLSARRPPSLPPLLDISIDDH
PGLYVPVPMPLFLEGGMDAGREGGILIKGKSVAARCLEPAAEECRLVLGY
VYGRVGLEEAEEGLRALSSPLSSSSSSSSSSSSAASARTRETMETMRSGE
GAKEEWLPLLLGAMTKARKRVVDASAAAVAPTAAAIAAVPSFPPSLSATH
YQLFLPHLLSQAIQSSTKRLDIALREGGREGGRARSGAPMAPVAWGNTNS
KTGDFKAALRAGGREGRRVVFLRWGEEIDKEGGRESLVMRNVWRAAEEGK
YIPVKTILMTADRCEALLEGGREGGMETCLGEWECGWMGKGSCV*
back to top
Synonyms
Publications