NO19G02240, NO19G02240 (gene) Nannochloropsis oceanica

Overview
NameNO19G02240
Unique NameNO19G02240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1283
Alignment locationchr19:638751..640033 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:638751..640033 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO19G02240 vs. NCBI_GenBank
Match: EWM23717.1 (hypothetical protein Naga_101252g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 189.1 bits (479), Expect = 2.600e-44
Identity = 148/335 (44.18%), Postives = 185/335 (55.22%), Query Frame = 0 
Query:   49 NLSSHIYDPSLPPALLIPIGPQCSGKSTLLRRLSARRPPSLPPLLDISIDDHPGLYVPVPMPLFLEGGMDAGREGGI------LIKGKSVAARCLEPAAEECRLVLGYVYGRVGLEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGAKEEWLPLLLGAMTKARKRVVDASAAAVAPTAAAIAAVPSFPPSLSATHYQLFLPHLLSQAIQSSTKRLDIALREGGREGGRARSGAPMAPVAWGNTNSKTGDFKXXXXXXXXXXXRVVFLRWGEEIDKEGGRESLVMRNVWRAAEEGKYIPVKTILMTADRCEALLE--GGREGG 376
            +L   IYD   PP+LLI +GPQC+GK+TLL+ L+  RP   PPL+D++IDD  GLYVP+                        LIKG+++++RC + A  E RLVLGY++G   +E                  XXXXXXXXXXXXXXXXXXXXXX       W+ LLL A+ KAR        A +A T          PP  +A+HYQLFLP LL QAI+ S +RL              RS     PVAWGNTNSK  DFK           RV+F+RWG+E+ KE G+E LV+RNVWRA  EGKY+PV+TI     + +   E  GGR GG
Sbjct:   75 SLQQDIYDLKRPPSLLITVGPQCAGKTTLLKHLNESRPSFAPPLVDVAIDDQAGLYVPLXXXXXXXXXXXXXXXXXXXXXLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENV-----------EQALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWITLLLHALAKAR--------ATIATTTKVDTVATWSPP--AASHYQLFLPDLLPQAIRRSYQRL-------------TRSLCGPGPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYVPVRTIFCGLGKDQGTSERAGGRAGG 375
The following BLAST results are available for this feature:
BLAST of NO19G02240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23717.12.600e-4444.18hypothetical protein Naga_101252g2, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02240.1NO19G02240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101252g2gene6738Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02240.1NO19G02240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02240 ID=NO19G02240|Name=NO19G02240|organism=Nannochloropsis oceanica|type=gene|length=1283bp
CCTCTGCCTCCTCCTTGCTCCCGTCCAACTCCTCTTCCTCCTCCTCCTCC
TCCCCATGGTCCTCCTCGCCAGCGTTACACCCGCTTTTCACTCCGCTATT
CTGACACGCCGGCACCATCGATCAAGTCATTGCGTCCTGTACGCAGACAC
CGCGAGCCAGGCAGCAGCAGCAGCAACCTCCGACGACCTCCTCCTGTCTA
ACCTCTCCTCCCACATTTACGACCCCTCCCTCCCTCCCGCCCTCCTCATC
CCCATCGGGCCTCAATGCAGCGGCAAAAGCACCCTATTGCGTCGTTTGAG
TGCCCGCCGTCCTCCTTCACTCCCTCCCTTGCTCGACATCTCTATCGACG
ACCATCCGGGCCTCTACGTCCCGGTGCCCATGCCTCTCTTCCTGGAGGGA
GGAATGGATGCAGGCAGGGAGGGAGGGATACTGATAAAGGGGAAATCAGT
GGCAGCAAGGTGCCTGGAGCCGGCGGCAGAAGAGTGCAGGCTGGTCCTCG
GCTATGTTTACGGGAGGGTGGGGTTGGAGGAAGCGGAGGAGGGCTTGCGA
GCCTTGTCCTCTCCCCTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTC
GTCTGCAGCCTCTGCGAGGACAAGAGAAACGATGGAGACGATGAGGAGTG
GGGAGGGGGCGAAAGAGGAGTGGCTGCCGCTGCTGCTTGGCGCGATGACG
AAGGCGCGAAAGAGGGTTGTCGATGCAAGCGCCGCTGCTGTTGCTCCCAC
TGCTGCTGCAATTGCTGCTGTGCCTTCCTTCCCTCCCTCGCTTTCTGCAA
CCCACTACCAGCTGTTCCTGCCCCACCTTCTCTCCCAGGCGATCCAAAGC
AGCACCAAGAGGTTGGACATCGCGCTGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGCGAGGTCCGGGGCACCCATGGCACCTGTGGCATGGGGAAATACGA
ACAGCAAGACTGGTGACTTCAAGGCGGCCTTGAGGGCGGGAGGGAGGGAG
GGAAGGAGGGTGGTGTTTTTGAGATGGGGCGAGGAGATCGATAAGGAGGG
AGGGAGGGAGAGTTTGGTGATGAGGAATGTGTGGAGGGCAGCAGAGGAGG
GGAAGTACATCCCTGTCAAAACGATTCTAATGACTGCGGATAGGTGCGAG
GCCTTGCTCGAGGGGGGAAGGGAGGGAGGGATGGAGACCTGCTTGGGAGA
GTGGGAATGCGGTTGGATGGGGAAGGGAAGCTGTGTCTGATGGCGGAGGA
GGGAGGGAGGAATGGAGGGAAGGGGAAGGAGGG
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protein sequence of NO19G02240.1

>NO19G02240.1-protein ID=NO19G02240.1-protein|Name=NO19G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MVLLASVTPAFHSAILTRRHHRSSHCVLYADTASQAAAAATSDDLLLSNL
SSHIYDPSLPPALLIPIGPQCSGKSTLLRRLSARRPPSLPPLLDISIDDH
PGLYVPVPMPLFLEGGMDAGREGGILIKGKSVAARCLEPAAEECRLVLGY
VYGRVGLEEAEEGLRALSSPLSSSSSSSSSSSSAASARTRETMETMRSGE
GAKEEWLPLLLGAMTKARKRVVDASAAAVAPTAAAIAAVPSFPPSLSATH
YQLFLPHLLSQAIQSSTKRLDIALREGGREGGRARSGAPMAPVAWGNTNS
KTGDFKAALRAGGREGRRVVFLRWGEEIDKEGGRESLVMRNVWRAAEEGK
YIPVKTILMTADRCEALLEGGREGGMETCLGEWECGWMGKGSCV*
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Synonyms
Publications