NO19G02240.1, NO19G02240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02240.1
Unique NameNO19G02240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1283
Alignment locationchr19:638751..640033 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:638751..640033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02240.1 vs.
Match: EWM23717.1 (hypothetical protein Naga_101252g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 270.4 bits (690), Expect = 8.800e-69
Identity = 165/335 (49.25%), Postives = 212/335 (63.28%), Query Frame = 0 
Query:   49 NLSSHIYDPSLPPALLIPIGPQCSGKSTLLRRLSARRPPSLPPLLDISIDDHPGLYVPVPMPLFLEGGMDAGREGG------ILIKGKSVAARCLEPAAEECRLVLGYVYGRVGLEEAEEGLRALSSPLSSSSSSSSSSSSAASARTRETMETMRSGEGAKEEWLPLLLGAMTKARKRVVDASAAAVAPTAAAIAAVPSFPPSLSATHYQLFLPHLLSQAIQSSTKRLDIALREGGREGGRARSGAPMAPVAWGNTNSKTGDFKAALRAGGREGRRVVFLRWGEEIDKEGGRESLVMRNVWRAAEEGKYIPVKTILMTADRCEALLE--GGREGG 376
            +L   IYD   PP+LLI +GPQC+GK+TLL+ L+  RP   PPL+D++IDD  GLYVP+PMPLFLEGG + GREGG       LIKG+++++RC + A  E RLVLGY++G   +E  E+ LRAL+S  SSSSSSSSSSSS++S+   E           ++EW+ LLL A+ KAR        A +A T          PP  +A+HYQLFLP LL QAI+ S +RL              RS     PVAWGNTNSK  DFK A+   G+ GRRV+F+RWG+E+ KE G+E LV+RNVWRA  EGKY+PV+TI     + +   E  GGR GG
Sbjct:   75 SLQQDIYDLKRPPSLLITVGPQCAGKTTLLKHLNESRPSFAPPLVDVAIDDQAGLYVPLPMPLFLEGGREGGREGGRKGSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSSSSSSSSSSSSSSSSSSSCPSE-----------EDEWITLLLHALAKAR--------ATIATTTKVDTVATWSPP--AASHYQLFLPDLLPQAIRRSYQRL-------------TRSLCGPGPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYVPVRTIFCGLGKDQGTSERAGGRAGG 375
The following BLAST results are available for this feature:
BLAST of NO19G02240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23717.18.800e-6949.25hypothetical protein Naga_101252g2, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02240NO19G02240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02240.1NO19G02240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02240.1.cds1NO19G02240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02240.1 ID=NO19G02240.1|Name=NO19G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1283bp
CCTCTGCCTCCTCCTTGCTCCCGTCCAACTCCTCTTCCTCCTCCTCCTCC
TCCCCATGGTCCTCCTCGCCAGCGTTACACCCGCTTTTCACTCCGCTATT
CTGACACGCCGGCACCATCGATCAAGTCATTGCGTCCTGTACGCAGACAC
CGCGAGCCAGGCAGCAGCAGCAGCAACCTCCGACGACCTCCTCCTGTCTA
ACCTCTCCTCCCACATTTACGACCCCTCCCTCCCTCCCGCCCTCCTCATC
CCCATCGGGCCTCAATGCAGCGGCAAAAGCACCCTATTGCGTCGTTTGAG
TGCCCGCCGTCCTCCTTCACTCCCTCCCTTGCTCGACATCTCTATCGACG
ACCATCCGGGCCTCTACGTCCCGGTGCCCATGCCTCTCTTCCTGGAGGGA
GGAATGGATGCAGGCAGGGAGGGAGGGATACTGATAAAGGGGAAATCAGT
GGCAGCAAGGTGCCTGGAGCCGGCGGCAGAAGAGTGCAGGCTGGTCCTCG
GCTATGTTTACGGGAGGGTGGGGTTGGAGGAAGCGGAGGAGGGCTTGCGA
GCCTTGTCCTCTCCCCTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTC
GTCTGCAGCCTCTGCGAGGACAAGAGAAACGATGGAGACGATGAGGAGTG
GGGAGGGGGCGAAAGAGGAGTGGCTGCCGCTGCTGCTTGGCGCGATGACG
AAGGCGCGAAAGAGGGTTGTCGATGCAAGCGCCGCTGCTGTTGCTCCCAC
TGCTGCTGCAATTGCTGCTGTGCCTTCCTTCCCTCCCTCGCTTTCTGCAA
CCCACTACCAGCTGTTCCTGCCCCACCTTCTCTCCCAGGCGATCCAAAGC
AGCACCAAGAGGTTGGACATCGCGCTGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGCGAGGTCCGGGGCACCCATGGCACCTGTGGCATGGGGAAATACGA
ACAGCAAGACTGGTGACTTCAAGGCGGCCTTGAGGGCGGGAGGGAGGGAG
GGAAGGAGGGTGGTGTTTTTGAGATGGGGCGAGGAGATCGATAAGGAGGG
AGGGAGGGAGAGTTTGGTGATGAGGAATGTGTGGAGGGCAGCAGAGGAGG
GGAAGTACATCCCTGTCAAAACGATTCTAATGACTGCGGATAGGTGCGAG
GCCTTGCTCGAGGGGGGAAGGGAGGGAGGGATGGAGACCTGCTTGGGAGA
GTGGGAATGCGGTTGGATGGGGAAGGGAAGCTGTGTCTGATGGCGGAGGA
GGGAGGGAGGAATGGAGGGAAGGGGAAGGAGGG
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protein sequence of NO19G02240.1

>NO19G02240.1-protein ID=NO19G02240.1-protein|Name=NO19G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MVLLASVTPAFHSAILTRRHHRSSHCVLYADTASQAAAAATSDDLLLSNL
SSHIYDPSLPPALLIPIGPQCSGKSTLLRRLSARRPPSLPPLLDISIDDH
PGLYVPVPMPLFLEGGMDAGREGGILIKGKSVAARCLEPAAEECRLVLGY
VYGRVGLEEAEEGLRALSSPLSSSSSSSSSSSSAASARTRETMETMRSGE
GAKEEWLPLLLGAMTKARKRVVDASAAAVAPTAAAIAAVPSFPPSLSATH
YQLFLPHLLSQAIQSSTKRLDIALREGGREGGRARSGAPMAPVAWGNTNS
KTGDFKAALRAGGREGRRVVFLRWGEEIDKEGGRESLVMRNVWRAAEEGK
YIPVKTILMTADRCEALLEGGREGGMETCLGEWECGWMGKGSCV*
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mRNA from alignment at chr19:638751..640033-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02240.1 ID=NO19G02240.1|Name=NO19G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1283bp|location=Sequence derived from alignment at chr19:638751..640033- (Nannochloropsis oceanica)
CCTCTGCCTCCTCCTTGCTCCCGTCCAACTCCTCTTCCTCCTCCTCCTCC
TCCCCATGGTCCTCCTCGCCAGCGTTACACCCGCTTTTCACTCCGCTATT
CTGACACGCCGGCACCATCGATCAAGTCATTGCGTCCTGTACGCAGACAC
CGCGAGCCAGGCAGCAGCAGCAGCAACCTCCGACGACCTCCTCCTGTCTA
ACCTCTCCTCCCACATTTACGACCCCTCCCTCCCTCCCGCCCTCCTCATC
CCCATCGGGCCTCAATGCAGCGGCAAAAGCACCCTATTGCGTCGTTTGAG
TGCCCGCCGTCCTCCTTCACTCCCTCCCTTGCTCGACATCTCTATCGACG
ACCATCCGGGCCTCTACGTCCCGGTGCCCATGCCTCTCTTCCTGGAGGGA
GGAATGGATGCAGGCAGGGAGGGAGGGATACTGATAAAGGGGAAATCAGT
GGCAGCAAGGTGCCTGGAGCCGGCGGCAGAAGAGTGCAGGCTGGTCCTCG
GCTATGTTTACGGGAGGGTGGGGTTGGAGGAAGCGGAGGAGGGCTTGCGA
GCCTTGTCCTCTCCCCTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTC
GTCTGCAGCCTCTGCGAGGACAAGAGAAACGATGGAGACGATGAGGAGTG
GGGAGGGGGCGAAAGAGGAGTGGCTGCCGCTGCTGCTTGGCGCGATGACG
AAGGCGCGAAAGAGGGTTGTCGATGCAAGCGCCGCTGCTGTTGCTCCCAC
TGCTGCTGCAATTGCTGCTGTGCCTTCCTTCCCTCCCTCGCTTTCTGCAA
CCCACTACCAGCTGTTCCTGCCCCACCTTCTCTCCCAGGCGATCCAAAGC
AGCACCAAGAGGTTGGACATCGCGCTGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGCGAGGTCCGGGGCACCCATGGCACCTGTGGCATGGGGAAATACGA
ACAGCAAGACTGGTGACTTCAAGGCGGCCTTGAGGGCGGGAGGGAGGGAG
GGAAGGAGGGTGGTGTTTTTGAGATGGGGCGAGGAGATCGATAAGGAGGG
AGGGAGGGAGAGTTTGGTGATGAGGAATGTGTGGAGGGCAGCAGAGGAGG
GGAAGTACATCCCTGTCAAAACGATTCTAATGACTGCGGATAGGTGCGAG
GCCTTGCTCGAGGGGGGAAGGGAGGGAGGGATGGAGACCTGCTTGGGAGA
GTGGGAATGCGGTTGGATGGGGAAGGGAAGCTGTGTCTGATGGCGGAGGA
GGGAGGGAGGAATGGAGGGAAGGGGAAGGAGGG
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Coding sequence (CDS) from alignment at chr19:638751..640033-

>NO19G02240.1 ID=NO19G02240.1|Name=NO19G02240.1|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at chr19:638751..640033- (Nannochloropsis oceanica)
ATGGTCCTCCTCGCCAGCGTTACACCCGCTTTTCACTCCGCTATTCTGAC
ACGCCGGCACCATCGATCAAGTCATTGCGTCCTGTACGCAGACACCGCGA
GCCAGGCAGCAGCAGCAGCAACCTCCGACGACCTCCTCCTGTCTAACCTC
TCCTCCCACATTTACGACCCCTCCCTCCCTCCCGCCCTCCTCATCCCCAT
CGGGCCTCAATGCAGCGGCAAAAGCACCCTATTGCGTCGTTTGAGTGCCC
GCCGTCCTCCTTCACTCCCTCCCTTGCTCGACATCTCTATCGACGACCAT
CCGGGCCTCTACGTCCCGGTGCCCATGCCTCTCTTCCTGGAGGGAGGAAT
GGATGCAGGCAGGGAGGGAGGGATACTGATAAAGGGGAAATCAGTGGCAG
CAAGGTGCCTGGAGCCGGCGGCAGAAGAGTGCAGGCTGGTCCTCGGCTAT
GTTTACGGGAGGGTGGGGTTGGAGGAAGCGGAGGAGGGCTTGCGAGCCTT
GTCCTCTCCCCTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCGTCTG
CAGCCTCTGCGAGGACAAGAGAAACGATGGAGACGATGAGGAGTGGGGAG
GGGGCGAAAGAGGAGTGGCTGCCGCTGCTGCTTGGCGCGATGACGAAGGC
GCGAAAGAGGGTTGTCGATGCAAGCGCCGCTGCTGTTGCTCCCACTGCTG
CTGCAATTGCTGCTGTGCCTTCCTTCCCTCCCTCGCTTTCTGCAACCCAC
TACCAGCTGTTCCTGCCCCACCTTCTCTCCCAGGCGATCCAAAGCAGCAC
CAAGAGGTTGGACATCGCGCTGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
CGAGGTCCGGGGCACCCATGGCACCTGTGGCATGGGGAAATACGAACAGC
AAGACTGGTGACTTCAAGGCGGCCTTGAGGGCGGGAGGGAGGGAGGGAAG
GAGGGTGGTGTTTTTGAGATGGGGCGAGGAGATCGATAAGGAGGGAGGGA
GGGAGAGTTTGGTGATGAGGAATGTGTGGAGGGCAGCAGAGGAGGGGAAG
TACATCCCTGTCAAAACGATTCTAATGACTGCGGATAGGTGCGAGGCCTT
GCTCGAGGGGGGAAGGGAGGGAGGGATGGAGACCTGCTTGGGAGAGTGGG
AATGCGGTTGGATGGGGAAGGGAAGCTGTGTCTGA
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Synonyms
Publications