NO19G02170, NO19G02170 (gene) Nannochloropsis oceanica

Overview
NameNO19G02170
Unique NameNO19G02170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1164
Alignment locationchr19:620366..621529 +

Link to JBrowse

Properties
Property NameValue
DescriptionAcylphosphatase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:620366..621529 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003998acylphosphatase activity
GO:0016787hydrolase activity
GO:0003998acylphosphatase activity
Vocabulary: INTERPRO
TermDefinition
IPR036046Acylphosphatase-like_dom_sf
IPR001792Acylphosphatase-like_dom
IPR020456Acylphosphatase
Homology
[Close]
BLAST of NO19G02170 vs. NCBI_GenBank
Match: KRX92075.1 (Acylphosphatase-2 [Trichinella pseudospiralis])

HSP 1 Score: 115.5 bits (288), Expect = 1.000e-22
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 0 
Query:   13 KPLWHMDWEVCGKVQGVWFRRYTVEKAQSLGLVGWCSNTVCGTVKGEAEGPPEMLEVFRYWLQNEGSPQSRVSNAIFKNERRIDITNYKDFGVR 107
            K L  +D+EV GKVQGV+FR+ TVEKA+ LGLVGWC NT  GTV G+ EGP   +   + WL+N GSP SR+  A+FKNE+ I   N+  F V+
Sbjct:   40 KSLLSVDFEVFGKVQGVFFRKCTVEKAKDLGLVGWCQNTKTGTVVGQVEGPKNEVNEMKIWLENVGSPSSRIDKAVFKNEKEISTLNFNSFDVK 133
[Close]
BLAST of NO19G02170 vs. NCBI_GenBank
Match: KRY89028.1 (Protein roller-3 [Trichinella pseudospiralis])

HSP 1 Score: 115.5 bits (288), Expect = 1.000e-22
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 0 
Query:   13 KPLWHMDWEVCGKVQGVWFRRYTVEKAQSLGLVGWCSNTVCGTVKGEAEGPPEMLEVFRYWLQNEGSPQSRVSNAIFKNERRIDITNYKDFGVR 107
            K L  +D+EV GKVQGV+FR+ TVEKA+ LGLVGWC NT  GTV G+ EGP   +   + WL+N GSP SR+  A+FKNE+ I   N+  F V+
Sbjct: 2512 KSLLSVDFEVFGKVQGVFFRKCTVEKAKDLGLVGWCQNTKTGTVVGQVEGPKNEVNEMKIWLENVGSPSSRIDKAVFKNEKEISTLNFNSFDVK 2605
[Close]
BLAST of NO19G02170 vs. NCBI_GenBank
Match: KRZ27543.1 (Acylphosphatase-2, partial [Trichinella pseudospiralis])

HSP 1 Score: 115.5 bits (288), Expect = 1.000e-22
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 0 
Query:   13 KPLWHMDWEVCGKVQGVWFRRYTVEKAQSLGLVGWCSNTVCGTVKGEAEGPPEMLEVFRYWLQNEGSPQSRVSNAIFKNERRIDITNYKDFGVR 107
            K L  +D+EV GKVQGV+FR+ TVEKA+ LGLVGWC NT  GTV G+ EGP   +   + WL+N GSP SR+  A+FKNE+ I   N+  F V+
Sbjct:   75 KSLLSVDFEVFGKVQGVFFRKCTVEKAKDLGLVGWCQNTKTGTVVGQVEGPKNEVNEMKIWLENVGSPSSRIDKAVFKNEKEISTLNFNSFDVK 168
[Close]
BLAST of NO19G02170 vs. NCBI_GenBank
Match: KRZ32807.1 (Acylphosphatase-2, partial [Trichinella pseudospiralis])

HSP 1 Score: 115.5 bits (288), Expect = 1.000e-22
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 0 
Query:   13 KPLWHMDWEVCGKVQGVWFRRYTVEKAQSLGLVGWCSNTVCGTVKGEAEGPPEMLEVFRYWLQNEGSPQSRVSNAIFKNERRIDITNYKDFGVR 107
            K L  +D+EV GKVQGV+FR+ TVEKA+ LGLVGWC NT  GTV G+ EGP   +   + WL+N GSP SR+  A+FKNE+ I   N+  F V+
Sbjct:   29 KSLLSVDFEVFGKVQGVFFRKCTVEKAKDLGLVGWCQNTKTGTVVGQVEGPKNEVNEMKIWLENVGSPSSRIDKAVFKNEKEISTLNFNSFDVK 122
[Close]
BLAST of NO19G02170 vs. NCBI_GenBank
Match: KRZ76707.1 (Protein roller-3 [Trichinella papuae])

HSP 1 Score: 115.5 bits (288), Expect = 1.000e-22
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 0 
Query:   13 KPLWHMDWEVCGKVQGVWFRRYTVEKAQSLGLVGWCSNTVCGTVKGEAEGPPEMLEVFRYWLQNEGSPQSRVSNAIFKNERRIDITNYKDFGVR 107
            K L  +D+EV GKVQGV+FR+ TVEKA+ LGLVGWC NT  GTV G+ EGP   +   + WL+N GSP SR+  A+FKNE+ I   N+  F V+
Sbjct: 2538 KSLLSVDFEVFGKVQGVFFRKCTVEKAKDLGLVGWCQNTKTGTVVGQVEGPKNEVNEMKIWLENVGSPSSRIDKAVFKNEKEISTLNFNSFDVK 2631
[Close]
BLAST of NO19G02170 vs. NCBI_GenBank
Match: KRZ76711.1 (Protein roller-3 [Trichinella papuae])

HSP 1 Score: 115.5 bits (288), Expect = 1.000e-22
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 0 
Query:   13 KPLWHMDWEVCGKVQGVWFRRYTVEKAQSLGLVGWCSNTVCGTVKGEAEGPPEMLEVFRYWLQNEGSPQSRVSNAIFKNERRIDITNYKDFGVR 107
            K L  +D+EV GKVQGV+FR+ TVEKA+ LGLVGWC NT  GTV G+ EGP   +   + WL+N GSP SR+  A+FKNE+ I   N+  F V+
Sbjct: 2549 KSLLSVDFEVFGKVQGVFFRKCTVEKAKDLGLVGWCQNTKTGTVVGQVEGPKNEVNEMKIWLENVGSPSSRIDKAVFKNEKEISTLNFNSFDVK 2642
[Close]
BLAST of NO19G02170 vs. NCBI_GenBank
Match: KRX39199.1 (Protein roller-3 [Trichinella murrelli])

HSP 1 Score: 115.2 bits (287), Expect = 1.300e-22
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 0 
Query:   13 KPLWHMDWEVCGKVQGVWFRRYTVEKAQSLGLVGWCSNTVCGTVKGEAEGPPEMLEVFRYWLQNEGSPQSRVSNAIFKNERRIDITNYKDFGVRNG 109
            K L  +D+EV GKVQGV+FR+ TVEKA+ LGLVGWC NT  GTV G+ EGP   +   + WL+  GSP SR+  A+FKNE+ I   N+  F V+ G
Sbjct: 2561 KSLLSVDFEVFGKVQGVFFRKSTVEKAKDLGLVGWCQNTKTGTVIGQVEGPKNEVNEMKIWLEKVGSPSSRIDKAVFKNEKEISTLNFNSFDVKRG 2656
[Close]
BLAST of NO19G02170 vs. NCBI_GenBank
Match: KRX39200.1 (Acylphosphatase-2 [Trichinella murrelli])

HSP 1 Score: 115.2 bits (287), Expect = 1.300e-22
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 0 
Query:   13 KPLWHMDWEVCGKVQGVWFRRYTVEKAQSLGLVGWCSNTVCGTVKGEAEGPPEMLEVFRYWLQNEGSPQSRVSNAIFKNERRIDITNYKDFGVRNG 109
            K L  +D+EV GKVQGV+FR+ TVEKA+ LGLVGWC NT  GTV G+ EGP   +   + WL+  GSP SR+  A+FKNE+ I   N+  F V+ G
Sbjct:   95 KSLLSVDFEVFGKVQGVFFRKSTVEKAKDLGLVGWCQNTKTGTVIGQVEGPKNEVNEMKIWLEKVGSPSSRIDKAVFKNEKEISTLNFNSFDVKRG 190
[Close]
BLAST of NO19G02170 vs. NCBI_GenBank
Match: KRX39201.1 (Protein roller-3 [Trichinella murrelli])

HSP 1 Score: 115.2 bits (287), Expect = 1.300e-22
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 0 
Query:   13 KPLWHMDWEVCGKVQGVWFRRYTVEKAQSLGLVGWCSNTVCGTVKGEAEGPPEMLEVFRYWLQNEGSPQSRVSNAIFKNERRIDITNYKDFGVRNG 109
            K L  +D+EV GKVQGV+FR+ TVEKA+ LGLVGWC NT  GTV G+ EGP   +   + WL+  GSP SR+  A+FKNE+ I   N+  F V+ G
Sbjct: 2571 KSLLSVDFEVFGKVQGVFFRKSTVEKAKDLGLVGWCQNTKTGTVIGQVEGPKNEVNEMKIWLEKVGSPSSRIDKAVFKNEKEISTLNFNSFDVKRG 2666
[Close]
BLAST of NO19G02170 vs. NCBI_GenBank
Match: KRX76369.1 (Protein roller-3 [Trichinella sp. T6])

HSP 1 Score: 115.2 bits (287), Expect = 1.300e-22
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 0 
Query:   13 KPLWHMDWEVCGKVQGVWFRRYTVEKAQSLGLVGWCSNTVCGTVKGEAEGPPEMLEVFRYWLQNEGSPQSRVSNAIFKNERRIDITNYKDFGVRNG 109
            K L  +D+EV GKVQGV+FR+ TVEKA+ LGLVGWC NT  GTV G+ EGP   +   + WL+  GSP SR+  A+FKNE+ I   N+  F V+ G
Sbjct: 2576 KSLLSVDFEVFGKVQGVFFRKSTVEKAKDLGLVGWCQNTKTGTVIGQVEGPKNEVNEMKIWLEKVGSPSSRIDKAVFKNEKEISTLNFNSFDVKRG 2671
The following BLAST results are available for this feature:
BLAST of NO19G02170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KRX92075.11.000e-2254.26Acylphosphatase-2 [Trichinella pseudospiralis][more]
KRY89028.11.000e-2254.26Protein roller-3 [Trichinella pseudospiralis][more]
KRZ27543.11.000e-2254.26Acylphosphatase-2, partial [Trichinella pseudospir... [more]
KRZ32807.11.000e-2254.26Acylphosphatase-2, partial [Trichinella pseudospir... [more]
KRZ76707.11.000e-2254.26Protein roller-3 [Trichinella papuae][more]
KRZ76711.11.000e-2254.26Protein roller-3 [Trichinella papuae][more]
KRX39199.11.300e-2253.13Protein roller-3 [Trichinella murrelli][more]
KRX39200.11.300e-2253.13Acylphosphatase-2 [Trichinella murrelli][more]
KRX39201.11.300e-2253.13Protein roller-3 [Trichinella murrelli][more]
KRX76369.11.300e-2253.13Protein roller-3 [Trichinella sp. T6][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004556NSK004556Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02170.1NO19G02170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599373gene_7618Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100647g1gene6741Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02170.1NO19G02170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02170 ID=NO19G02170|Name=NO19G02170|organism=Nannochloropsis oceanica|type=gene|length=1164bp
AGCAGTTGAGCAAAGCCATGGCGGCATCCCCACCATCACGGGAAGGCAGC
GACAAACCGCTTTGGCACATGGACTGGGAAGTTTGTGGCAAGgtgagtgc
gaaagctagaaggagggaagaaatagaagatgattatcaatcgccgatga
ggaggagcagcaattgttctaggaaagtgtgtaatcgcaccgcctcaaca
aatgtagggctctcattcatccttgctgaaacgagcaacaagatgagaga
ctggagacatccagcatcgctcatgccgactgcaacgacaagagagatta
tcaacagctgttgcctataccttgtgctcgctcctctcatcctcttatct
aaactcgtccttcaccaacacttccccctctcacgcacgcgcacatcagG
TCCAAGGGGTATGGTTCCGGAGATACACGGTCGAAAAGGCACAATCATTG
GGTTTGGTGGGTTGGTGCTCAAATACAGTTTGTGGAACTGTCAAAGGGGA
GGCAGAGGGGCCTCCCGAGATGCTGGAGGTCTTTCGgtgcgtttattgtt
ggggaatatagagggggggcacaaagagggagggagggaagacgcgtgga
acgtttggggagcgaaagactatctcaggtaaaagaaatgacgggagagg
gagaagtgatcgtgtccttgtccttggaattttgttctcttgattgtgcc
ctaccccgatcactgtcctcttctccagtctcacgctcaattttctcctg
tcacatcagGTATTGGCTACAAAACGAGGGATCGCCACAATCGCGGGTGA
GCAACGCAATTTTCAAGAACGAGCGTCGGATCGATATAACCAATTACAAA
GACTTTGGGGTGCGGAATGGCTGAACAGGGGATGAAGGAGGAGGGGGGGT
TGGTGGGGATAGTGGGGCAAAGTGTGATGGCAGGGATCGCCGGGGGAATA
CAGAGATAGAGATATGATGTGCAGAGTATGTGTATAGATAGACGAAGCGA
ATGAAATGAAAGGGGGAAAGTGACAAGACTGCTTTTACCCGGGTTTCTGT
CCTTGGACTTTTACTCGACTTCCCATCCCCCACAACTCCCACCTCAAAAT
GCGTGTCTCAAGGTTGAGACGGCAGAAATGGCTCTCTGATGAAGCAATTC
AAACTACTTTTACA
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protein sequence of NO19G02170.1

>NO19G02170.1-protein ID=NO19G02170.1-protein|Name=NO19G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MAASPPSREGSDKPLWHMDWEVCGKVQGVWFRRYTVEKAQSLGLVGWCSN
TVCGTVKGEAEGPPEMLEVFRYWLQNEGSPQSRVSNAIFKNERRIDITNY
KDFGVRNG*
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Synonyms
Publications