NO19G02170.1, NO19G02170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02170.1
Unique NameNO19G02170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length634
Alignment locationchr19:620366..621529 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:620366..621529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02170.1 vs.
Match: KRZ27543.1 (Acylphosphatase-2, partial [Trichinella pseudospiralis])

HSP 1 Score: 115.5 bits (288), Expect = 1.000e-22
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 0 
Query:   13 KPLWHMDWEVCGKVQGVWFRRYTVEKAQSLGLVGWCSNTVCGTVKGEAEGPPEMLEVFRYWLQNEGSPQSRVSNAIFKNERRIDITNYKDFGVR 107
            K L  +D+EV GKVQGV+FR+ TVEKA+ LGLVGWC NT  GTV G+ EGP   +   + WL+N GSP SR+  A+FKNE+ I   N+  F V+
Sbjct:   75 KSLLSVDFEVFGKVQGVFFRKCTVEKAKDLGLVGWCQNTKTGTVVGQVEGPKNEVNEMKIWLENVGSPSSRIDKAVFKNEKEISTLNFNSFDVK 168
The following BLAST results are available for this feature:
BLAST of NO19G02170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KRZ27543.11.000e-2254.26Acylphosphatase-2, partial [Trichinella pseudospir... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02170NO19G02170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02170.1NO19G02170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02170.1.cds1NO19G02170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02170.1.cds2NO19G02170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02170.1.cds3NO19G02170.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02170.1 ID=NO19G02170.1|Name=NO19G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=634bp
AGCAGTTGAGCAAAGCCATGGCGGCATCCCCACCATCACGGGAAGGCAGC
GACAAACCGCTTTGGCACATGGACTGGGAAGTTTGTGGCAAGGTCCAAGG
GGTATGGTTCCGGAGATACACGGTCGAAAAGGCACAATCATTGGGTTTGG
TGGGTTGGTGCTCAAATACAGTTTGTGGAACTGTCAAAGGGGAGGCAGAG
GGGCCTCCCGAGATGCTGGAGGTCTTTCGGTATTGGCTACAAAACGAGGG
ATCGCCACAATCGCGGGTGAGCAACGCAATTTTCAAGAACGAGCGTCGGA
TCGATATAACCAATTACAAAGACTTTGGGGTGCGGAATGGCTGAACAGGG
GATGAAGGAGGAGGGGGGGTTGGTGGGGATAGTGGGGCAAAGTGTGATGG
CAGGGATCGCCGGGGGAATACAGAGATAGAGATATGATGTGCAGAGTATG
TGTATAGATAGACGAAGCGAATGAAATGAAAGGGGGAAAGTGACAAGACT
GCTTTTACCCGGGTTTCTGTCCTTGGACTTTTACTCGACTTCCCATCCCC
CACAACTCCCACCTCAAAATGCGTGTCTCAAGGTTGAGACGGCAGAAATG
GCTCTCTGATGAAGCAATTCAAACTACTTTTACA
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protein sequence of NO19G02170.1

>NO19G02170.1-protein ID=NO19G02170.1-protein|Name=NO19G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MAASPPSREGSDKPLWHMDWEVCGKVQGVWFRRYTVEKAQSLGLVGWCSN
TVCGTVKGEAEGPPEMLEVFRYWLQNEGSPQSRVSNAIFKNERRIDITNY
KDFGVRNG*
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mRNA from alignment at chr19:620366..621529+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02170.1 ID=NO19G02170.1|Name=NO19G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp|location=Sequence derived from alignment at chr19:620366..621529+ (Nannochloropsis oceanica)
AGCAGTTGAGCAAAGCCATGGCGGCATCCCCACCATCACGGGAAGGCAGC
GACAAACCGCTTTGGCACATGGACTGGGAAGTTTGTGGCAAGGTGAGTGC
GAAAGCTAGAAGGAGGGAAGAAATAGAAGATGATTATCAATCGCCGATGA
GGAGGAGCAGCAATTGTTCTAGGAAAGTGTGTAATCGCACCGCCTCAACA
AATGTAGGGCTCTCATTCATCCTTGCTGAAACGAGCAACAAGATGAGAGA
CTGGAGACATCCAGCATCGCTCATGCCGACTGCAACGACAAGAGAGATTA
TCAACAGCTGTTGCCTATACCTTGTGCTCGCTCCTCTCATCCTCTTATCT
AAACTCGTCCTTCACCAACACTTCCCCCTCTCACGCACGCGCACATCAGG
TCCAAGGGGTATGGTTCCGGAGATACACGGTCGAAAAGGCACAATCATTG
GGTTTGGTGGGTTGGTGCTCAAATACAGTTTGTGGAACTGTCAAAGGGGA
GGCAGAGGGGCCTCCCGAGATGCTGGAGGTCTTTCGGTGCGTTTATTGTT
GGGGAATATAGAGGGGGGGCACAAAGAGGGAGGGAGGGAAGACGCGTGGA
ACGTTTGGGGAGCGAAAGACTATCTCAGGTAAAAGAAATGACGGGAGAGG
GAGAAGTGATCGTGTCCTTGTCCTTGGAATTTTGTTCTCTTGATTGTGCC
CTACCCCGATCACTGTCCTCTTCTCCAGTCTCACGCTCAATTTTCTCCTG
TCACATCAGGTATTGGCTACAAAACGAGGGATCGCCACAATCGCGGGTGA
GCAACGCAATTTTCAAGAACGAGCGTCGGATCGATATAACCAATTACAAA
GACTTTGGGGTGCGGAATGGCTGAACAGGGGATGAAGGAGGAGGGGGGGT
TGGTGGGGATAGTGGGGCAAAGTGTGATGGCAGGGATCGCCGGGGGAATA
CAGAGATAGAGATATGATGTGCAGAGTATGTGTATAGATAGACGAAGCGA
ATGAAATGAAAGGGGGAAAGTGACAAGACTGCTTTTACCCGGGTTTCTGT
CCTTGGACTTTTACTCGACTTCCCATCCCCCACAACTCCCACCTCAAAAT
GCGTGTCTCAAGGTTGAGACGGCAGAAATGGCTCTCTGATGAAGCAATTC
AAACTACTTTTACA
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Coding sequence (CDS) from alignment at chr19:620366..621529+

>NO19G02170.1 ID=NO19G02170.1|Name=NO19G02170.1|organism=Nannochloropsis oceanica|type=CDS|length=327bp|location=Sequence derived from alignment at chr19:620366..621529+ (Nannochloropsis oceanica)
ATGGCGGCATCCCCACCATCACGGGAAGGCAGCGACAAACCGCTTTGGCA
CATGGACTGGGAAGTTTGTGGCAAGGTCCAAGGGGTATGGTTCCGGAGAT
ACACGGTCGAAAAGGCACAATCATTGGGTTTGGTGGGTTGGTGCTCAAAT
ACAGTTTGTGGAACTGTCAAAGGGGAGGCAGAGGGGCCTCCCGAGATGCT
GGAGGTCTTTCGGTATTGGCTACAAAACGAGGGATCGCCACAATCGCGGG
TGAGCAACGCAATTTTCAAGAACGAGCGTCGGATCGATATAACCAATTAC
AAAGACTTTGGGGTGCGGAATGGCTGA
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Synonyms
Publications