NO19G02140, NO19G02140 (gene) Nannochloropsis oceanica

Overview
NameNO19G02140
Unique NameNO19G02140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1602
Alignment locationchr19:611028..612629 -

Link to JBrowse

Properties
Property NameValue
DescriptionTrna (Adenine-n-)-methyltransferase non-catalytic subunit trm6
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:611028..612629 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0030488tRNA methylation
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0031515tRNA (m1A) methyltransferase complex
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR017423TRM6
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
BLAST of NO19G02140 vs. NCBI_GenBank
Match: EWM23698.1 (trna (adenine-n -)-methyltransferase non-catalytic subunit trm6 [Nannochloropsis gaditana])

HSP 1 Score: 657.1 bits (1694), Expect = 4.500e-185
Identity = 336/464 (72.41%), Postives = 387/464 (83.41%), Query Frame = 0
Query:   40 VIEEGAWVILQMGDGRNFFACAQSKGMMRLGRVNISLSGLIGVPYGSVLEVHPDGLVPLPGTNELYEDLAVGDMDGNEFTRGGGPASVGEYDGATSDNRDFTDTNTAQRMTMVEIEELKNSGASGHAIIQALASNSDTWDKKTAFAKQKWTRKKAHKYVVRVRAVAGNGTNVVQALFVKSGLVKSTAIRPDSIAQLLSYGNVSAGSRVLLFDSYSGVVLGSVLERLGGYGNVVNLFAGAQAHMDHVKYFNLPKEHLARTLVHYPLTGLAEAERAXXXXXXXXXXXXXXXXDKRFLPTAEEEVKARASGKFVVYQKPVGVNERVEEGKIGKGEEEG---DSFDRPKWLKYLEKKRSRLRALAEGRRLLLEGTDCLIVACRHDPAVVVPRLLPFMQEGAAFAVYCEFLEPLVALQDLLMDAGMLRLQLLSTWWREYQVMPGRSHPHMNMSADGGCVLTGIKISDGD 501
            VI+EGAWVILQMGDGRNFFACAQ KGMMRLGRV ISLSGLIGVPYGSVLEVHPD LVPLPGT ELYEDL+VGDMDGN+F RGG P  +GEYDG + DNRDF DTNTAQR++M E+EELK SGASG AIIQALASNSDTW+KKTAFAKQKWT+KKAHKYVVRVRA+AG G+NV +ALFVKSGLVK+TAIRPDSIAQLLS+GNV+AG+RVL+ DSYSGVVLG +LERLGG G  ++L+AGAQAH+DH+KYFNLP + LA+TLVH+P + LAE E                  D RFL TAEEE +ARASGKFV++           EG+ G+GEE+    + FDR KWLKYLEKKR RL  LAEGRRLL+EG DCL+VA RHDP+VVVPRLL F+++GAAFAVY E+LEPLVAL   LM+AGMLRLQ+LSTWWREYQ++PGRSHPHM+MS+DGG +LTGIK+S G+
Sbjct:   24 VIQEGAWVILQMGDGRNFFACAQQKGMMRLGRVTISLSGLIGVPYGSVLEVHPDRLVPLPGTTELYEDLSVGDMDGNDFARGGAP--LGEYDGVSLDNRDFADTNTAQRLSMEEVEELKRSGASGQAIIQALASNSDTWEKKTAFAKQKWTQKKAHKYVVRVRALAGCGSNVAEALFVKSGLVKTTAIRPDSIAQLLSFGNVAAGARVLVLDSYSGVVLGCILERLGGEGKAISLYAGAQAHIDHLKYFNLPTDQLAQTLVHFPASALAELE-VGRARRRAEGGEGGEEEDARFLATAEEEARARASGKFVLH--------TTREGE-GQGEEKAAGQEDFDRAKWLKYLEKKRRRLCVLAEGRRLLIEGADCLVVASRHDPSVVVPRLLAFLEDGAAFAVYHEYLEPLVALYASLMEAGMLRLQMLSTWWREYQILPGRSHPHMSMSSDGGYLLTGIKVSQGE 475          
BLAST of NO19G02140 vs. NCBI_GenBank
Match: XP_005853789.1 (hypothetical protein NGA_2025000, partial [Nannochloropsis gaditana CCMP526] >EKU22569.1 hypothetical protein NGA_2025000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 421.4 bits (1082), Expect = 4.200e-114
Identity = 209/257 (81.32%), Postives = 234/257 (91.05%), Query Frame = 0
Query:   40 VIEEGAWVILQMGDGRNFFACAQSKGMMRLGRVNISLSGLIGVPYGSVLEVHPDGLVPLPGTNELYEDLAVGDMDGNEFTRGGGPASVGEYDGATSDNRDFTDTNTAQRMTMVEIEELKNSGASGHAIIQALASNSDTWDKKTAFAKQKWTRKKAHKYVVRVRAVAGNGTNVVQALFVKSGLVKSTAIRPDSIAQLLSYGNVSAGSRVLLFDSYSGVVLGSVLERLGGYGNVVNLFAGAQAHMDHVKYFNLPKEHLA 297
            VI+EGAWVILQMGDGRNFFACAQ KGMMRLGRV ISLSGLIGVPYGSVLEVHPD LVPLPGT ELYEDL+VGDMDGN+F RGG P  +GEYDG + DNRDF DTNTAQR++M E+EELK SGASG AIIQALASNSDTW+KKTAFAKQKWT+KKAHKYVVRVRA+AG G+NV +ALFVKSGLVK+TAIRPDSIAQLLS+GNV+AG+RVL+ DSYSGVVLG +LERLGG G  ++L+AGAQAH+DH+KYFNLP + LA
Sbjct:   24 VIQEGAWVILQMGDGRNFFACAQQKGMMRLGRVTISLSGLIGVPYGSVLEVHPDRLVPLPGTTELYEDLSVGDMDGNDFARGGAP--LGEYDGVSLDNRDFADTNTAQRLSMEEVEELKRSGASGQAIIQALASNSDTWEKKTAFAKQKWTQKKAHKYVVRVRALAGCGSNVAEALFVKSGLVKTTAIRPDSIAQLLSFGNVAAGARVLVLDSYSGVVLGCILERLGGEGKAISLYAGAQAHIDHLKYFNLPTDQLA 278          
BLAST of NO19G02140 vs. NCBI_GenBank
Match: XP_008610122.1 (hypothetical protein SDRG_06135 [Saprolegnia diclina VS20] >EQC36701.1 hypothetical protein SDRG_06135 [Saprolegnia diclina VS20])

HSP 1 Score: 235.7 bits (600), Expect = 3.300e-58
Identity = 160/469 (34.12%), Postives = 242/469 (51.60%), Query Frame = 0
Query:   40 VIEEGAWVILQMGDGRNFFACAQSKGMMRLGRVNISLSGLIGVPYGSVLEVHPDGLVPLPGTNELYEDLAVGDMDGNEFTRGGGPASVGEYDGATSDNRDFTDTNTAQRMTMVEIEELKNSGASGHAIIQALASNSDTWDKKTAFAKQKWTRKKAHKYVVRVRAVAGNGTNVVQALFVKSGLVKSTAIRPDSIAQLLSYGNVSAGSRVLLFDSYSGVVLGSVLERLGGYGNVVNLFAGAQAHMDHVKYFNLPKEHLARTLVHYPL--TGLAEAERAXXXXXXXXXXXXXXXXDKRFLPTAEEEVKARASGKFVVYQKPVGVNERVEEGKIGKGEEEGDSFDRPKWLKYLEKKRSRLRAL--------AEGRRLLLEGTDCLIVACRHDPAVVVPRLLPFMQEGAAFAVYCEFLEPLVALQDLL--MDAGMLRLQLLSTWWREYQVMPGRSHPHMNMSADGGCVLTGIKI 497
            VI +G  V+    D R FF     K  +R+G+  ++L   IG PYG++ E     LVP+  T  L+ D    +              VG++   T+DNR +TDTN +Q+++ V+I EL+ SG +G  +I  L  NSDTWD KT F+KQK+ +KK  KY+ R++ V     ++ +   V+    K   +R D++ QLL YGNV AG++VL+ D+  G+  G++ ER+ G+G ++  F G Q   D ++ FN  +  +  +++ +PL   GL   + A                 +  + + +EE++AR               E  E   +   EE+          KYL KK +R +A         AE R LL   +D LI+A  +DP  ++  LLP +     F VY E+LEPL    D L  MD+ ++ LQL  TW REYQV+PGR+HP M MSA  G +L+GIK+
Sbjct:    4 VIRDGDTVVCYTSDDRVFFQEVSPKMTLRIGKATVTLKSAIGHPYGTIFEESEKALVPV--TGGLFPDPVAPE--------------VGDFQVPTNDNRHYTDTNDSQKLSNVQIAELRASGVNGSELIAKLVENSDTWDTKTDFSKQKYLKKKQQKYMPRIQMVRCTAMSLTEVYHVRQPF-KILNLRADTLGQLLQYGNVYAGAQVLVVDTCMGLATGAIAERMLGHGRILAGFEGQQMAADTLRRFNF-EPAVNDSIIPFPLGYVGLLSKDEA---------DLAPPPKSQAEMDSTQEEIEARQ-------------REVAERVALYTPEEQA---------KYLAKKEARTKARQTKTXXTPAEVRTLLRTPSDSLIIASHYDPLAMLQSLLPLLGLSKPFVVYSEYLEPLTTAFDALQRMDS-IVNLQLNDTWTREYQVLPGRTHPEMTMSAGSGYILSGIKV 422          
BLAST of NO19G02140 vs. NCBI_GenBank
Match: XP_012204678.1 (hypothetical protein SPRG_10142 [Saprolegnia parasitica CBS 223.65] >KDO24610.1 hypothetical protein SPRG_10142 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 235.7 bits (600), Expect = 3.300e-58
Identity = 162/470 (34.47%), Postives = 241/470 (51.28%), Query Frame = 0
Query:   40 VIEEGAWVILQMGDGRNFFACAQSKGMMRLGRVNISLSGLIGVPYGSVLEVHPDGLVPLPGTNELYEDLAVGDMDGNEFTRGGGPASVGEYDGATSDNRDFTDTNTAQRMTMVEIEELKNSGASGHAIIQALASNSDTWDKKTAFAKQKWTRKKAHKYVVRVRAVAGNGTNVVQALFVKSGLVKSTAIRPDSIAQLLSYGNVSAGSRVLLFDSYSGVVLGSVLERLGGYGNVVNLFAGAQAHMDHVKYFNL-PKEHLARTLVHYPL--TGLAEAERAXXXXXXXXXXXXXXXXDKRFLPTAEEEVKARASGKFVVYQKPVGVNERVEEGKIGKGEEEGDSFDRPKWLKYLEKKRSRLRAL--------AEGRRLLLEGTDCLIVACRHDPAVVVPRLLPFMQEGAAFAVYCEFLEPLVALQDLL--MDAGMLRLQLLSTWWREYQVMPGRSHPHMNMSADGGCVLTGIKI 497
            VI +G  V+    D R FF     K  +R+G+  ++L   IG PYG++ E     LVP+  T  L+ D    +              VG++   T+DNR +TDTN +Q+++ V+I EL+ SG +G  +I  L  NSDTWD KT F+KQK+ +KK  KY+ R++ V     ++ +    +    K   +R D++ QLL YGNV AG++VL+ D+  G+  G++ ER+ G+G ++  F G Q   D ++ FN  P  H   ++V +PL   GL   + A                 +  + +  EE++AR               E  E   +   EE+          KYL KK +R++A         AE R LL   +D LI+A  +DP  ++  LLP +     F VY E+LEPL    D L  MD+ ++ LQL  TW REYQV+PGR+HP M MSA  G +L+GIK+
Sbjct:    4 VIRDGDTVVCYTSDDRVFFQEVSPKMTLRIGKATVTLKSAIGHPYGTIFEESEKALVPV--TGGLFPDPVAPE--------------VGDFQVPTNDNRHYTDTNDSQKLSNVQIAELRASGVNGPELIAKLVENSDTWDTKTEFSKQKYLKKKQQKYMPRIQMVRCTAMSLAEVYHARQPF-KILNLRADTLGQLLQYGNVYAGAQVLVVDTCMGLATGAIAERMLGHGRILAGFEGQQMAADTLRRFNFEPAVH--DSIVPFPLAYVGLLTKDEA---------DLAPPPKSQAEMDSTNEEIEARQ-------------REVAERVALYSPEEQA---------KYLAKKEARIKARQTKTRRTPAEVRALLRSPSDSLIIASHYDPLSMLQALLPLLGLSKPFVVYSEYLEPLTTAFDALQRMDS-IVNLQLNDTWTREYQVLPGRTHPEMTMSAGSGYILSGIKV 422          
BLAST of NO19G02140 vs. NCBI_GenBank
Match: XP_005853790.1 (trna (adenine-n -)-methyltransferase non-catalytic subunit trm6, partial [Nannochloropsis gaditana CCMP526] >EKU22570.1 trna (adenine-n -)-methyltransferase non-catalytic subunit trm6, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 231.5 bits (589), Expect = 6.200e-57
Identity = 122/191 (63.87%), Postives = 147/191 (76.96%), Query Frame = 0
Query:  330 DKRFLPTAEEEVKARASGKFVVYQKPVGVNERVEEGKIGKGEEEG---DSFDRPKWLKYLEKKRSRLRALAEGRRLLLEGTDCLIVACRHDPAVVVPRLLPFMQEGAAFAVYCEFLEPLVALQDLLMDAGMLRLQLLSTWWREYQVMPGRSHPHMNMSADGGCVLTGIKISDGDKICGGPSMEGVEAQERE 518
            D RFL TAEEE +ARASGKFV++           EG+ G+GEE+    + FDR KWLKYLEKKR RL  LAEGRRLL+EG DCL+VA RHDP+VVVPRLL F+++GAAFAVY E+LEPLVAL   LM+AGMLRLQ+LSTWWREYQ++PGRSHPHM+MS+DGG +LTGIK+S G+        EG   +ER+
Sbjct:    1 DARFLATAEEEARARASGKFVLH--------TTREGE-GQGEEKAAGQEDFDRAKWLKYLEKKRRRLCVLAEGRRLLIEGADCLVVASRHDPSVVVPRLLAFLEDGAAFAVYHEYLEPLVALYASLMEAGMLRLQMLSTWWREYQILPGRSHPHMSMSSDGGYLLTGIKVSQGE----AGQREGGGEEERQ 178          
BLAST of NO19G02140 vs. NCBI_GenBank
Match: OQS00261.1 (tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6 [Thraustotheca clavata])

HSP 1 Score: 228.8 bits (582), Expect = 4.000e-56
Identity = 151/459 (32.90%), Postives = 231/459 (50.33%), Query Frame = 0
Query:   40 VIEEGAWVILQMGDGRNFFACAQSKGMMRLGRVNISLSGLIGVPYGSVLEVHPDGLVPLPGTNELYEDLAVGDMDGNEFTRGGGPASVGEYDGATSDNRDFTDTNTAQRMTMVEIEELKNSGASGHAIIQALASNSDTWDKKTAFAKQKWTRKKAHKYVVRVRAVAGNGTNVVQALFVKSGLVKSTAIRPDSIAQLLSYGNVSAGSRVLLFDSYSGVVLGSVLERLGGYGNVVNLFAGAQAHMDHVKYFNLPKEHLARTLVHYPLTGLAEAERAXXXXXXXXXXXXXXXXDKRFLPTAEEEVKARASGKFVVYQKPVGVNERVEEGKIGKGEEEGDSFDRPKWLKYLEKKRSRLRAL-AEGRRLLLEGTDCLIVACRHDPAVVVPRLLPFMQEGAAFAVYCEFLEPLVALQDLLMDA-GMLRLQLLSTWWREYQVMPGRSHPHMNMSADGGCVLTGIKI 497
            +I EG  V+    D R FF    SK  MR+G+V + L G IG P G++ E     LV +  T  L+ D    +              VGE+   T+DNR +TDTN +Q+++ +EI  L+ SG +G  +I  L  NSDTWD KT F+KQK+ +KK  KY+ RV+ V     ++ +   V+    K   +R D++ Q++ Y N+ AG+ V++ D+  G+V G++ ER+ G+G+++  F G Q   D ++ FN     +   +V +PL  + +  +                 D+  L  AE++  A          + +G  +R    +I K   E                 ++ R    + R LL +  D LI+A  +DP   +  LLP +     F VYCE+LEPL    D+L     +L LQL  TW REYQV+PGR+HP M+MSA  G +L+GIK+
Sbjct:    4 LIREGDTVVCYTSDDRVFFLEILSKMTMRVGKVAVPLKGAIGHPLGTIFEESNKALVAV--TGGLFPDPVAPE--------------VGEFQVPTNDNRHYTDTNDSQKLSNIEIANLRASGVNGSDLIAKLVENSDTWDTKTDFSKQKYLKKKQQKYMPRVQMVRCTAMSLCEVYHVRQPF-KILNLRADTLGQIVQYANIYAGAHVVVVDTCMGLVTGAIAERMLGHGHIMAGFEGQQVAADTLRRFNFDNT-VMDAIVPFPLHYIGQLNK-----------------DEAELVAAEQKKSAEMDST----PEEIGARQREVAERIAKYTPEXXXXXXXXXXXXXXXXENKTRRTPTDVRNLLRKTADSLIIAANYDPLETLQALLPLLGLSKPFVVYCEYLEPLTRAFDVLQRTDSILNLQLNDTWTREYQVLPGRTHPEMSMSAGSGYILSGIKV 423          
BLAST of NO19G02140 vs. NCBI_GenBank
Match: XP_008874185.1 (hypothetical protein H310_09801 [Aphanomyces invadans] >ETV96939.1 hypothetical protein H310_09801 [Aphanomyces invadans])

HSP 1 Score: 225.3 bits (573), Expect = 4.400e-55
Identity = 145/458 (31.66%), Postives = 239/458 (52.18%), Query Frame = 0
Query:   40 VIEEGAWVILQMGDGRNFFACAQSKGMMRLGRVNISLSGLIGVPYGSVLEVHPDGLVPLPGTNELYEDLAVGDMDGNEFTRGGGPASVGEYDGATSDNRDFTDTNTAQRMTMVEIEELKNSGASGHAIIQALASNSDTWDKKTAFAKQKWTRKKAHKYVVRVRAVAGNGTNVVQALFVKSGLVKSTAIRPDSIAQLLSYGNVSAGSRVLLFDSYSGVVLGSVLERLGGYGNVVNLFAGAQAHMDHVKYFNLPKEHLARTLVHYPLTGLAEAERAXXXXXXXXXXXXXXXXDKRFLPTAEEEVKARASGKFVVYQKPVGVNERVEEGKIGKGEEEGDSFDRPKWLKYLEKKRSRLRALAEGRRLLLEGTDCLIVACRHDPAVVVPRLLPFMQEGAAFAVYCEFLEPLVALQDLLMD-AGMLRLQLLSTWWREYQVMPGRSHPHMNMSADGGCVLTGIKI 497
            VI EG  V+    D R FF     +  +R+G+V I +  ++G P+GS+ E     LVP+ G   L+ D    +              VGE++  T+DNR +TDTN +Q+++ VEI EL+  G +G A+I  L  NSDTWD KT F+KQK+ +KK  KY+ R++ V      +     V+    K   +R D I Q+LSYGN+ AG++V++ ++  G++ G++ ER+ G+G ++  + G Q  +D ++ FN   + +  ++V++P   + + +                  +++      E  KA  + +  +Y       E  ++  + K E+           K  +++    +  ++ R LL   +D L++   +DP VV+ +LLP +     F VYCE+LEPL    D L     ++ LQL  TW REYQ++PGR+HP M MSA  G +L+GIK+
Sbjct:   15 VIREGDTVVCYTSDDRVFFQEILPRMTIRIGKVQIPVKCVVGFPFGSIFEEKEKTLVPVEG--GLFPDPVAPE--------------VGEFEVPTNDNRSYTDTNDSQKLSNVEIAELRAQGVNGSALIAKLVENSDTWDTKTDFSKQKYLKKKQQKYMPRIQMVRCTAMALCDVYHVRQP-SKILNLRFDIIGQILSYGNIYAGAQVMVVETCMGLITGAIAERMLGHGTLLAGYEGQQPSVDTIRRFNF-DQAVNDSIVYFPFHYIGQLDN---DEAALVAKEAALNEEEQPSEDVLEARKAEVAARIAMY------TEAEQKKYLAKKEQR----------KLKQRQAKPKKTPSDIRALLRAPSDSLVIVTHYDPLVVLLQLLPRLGLSRPFVVYCEYLEPLATAFDALQRMESIINLQLNDTWTREYQILPGRTHPEMTMSAGSGYLLSGIKV 435          
BLAST of NO19G02140 vs. NCBI_GenBank
Match: OQR86726.1 (tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6 [Achlya hypogyna])

HSP 1 Score: 223.8 bits (569), Expect = 1.300e-54
Identity = 155/472 (32.84%), Postives = 230/472 (48.73%), Query Frame = 0
Query:   36 AALPVIEEGAWVILQMGDGRNFFACAQSKGMMRLGRVNISLSGLIGVPYGSVLEVHPDGLVPLPGTNELYEDLAVGDMDGNEFTRGGGPASVGEYDGATSDNRDFTDTNTAQRMTMVEIEELKNSGASGHAIIQALASNSDTWDKKTAFAKQKWTRKKAHKYVVRVRAVAGNGTNVVQALFVKSGLVKSTAIRPDSIAQLLSYGNVSAGSRVLLFDSYSGVVLGSVLERLGGYGNVVNLFAGAQAHMDHVKYFNLPKEHLARTLVHYPL--TGLAEAERAXXXXXXXXXXXXXXXXDKRFLPTAEEEVKARASGKFVVYQKPVGVNERVEEGKIGKGEEEGDSFDRPKWLKYLEKKRSRLRAL--------AEGRRLLLEGTDCLIVACRHDPAVVVPRLLPFMQEGAAFAVYCEFLEPLVALQDLLMD-AGMLRLQLLSTWWREYQVMPGRSHPHMNMSADGGCVLTGIKI 497
            AA  VI +G  V+    D R FF     K  +R+G+ N+ L   IG PYG++ E     L+ +  T  L+ D    +              VG++   T+DNR +TDTN +Q+++ VEI EL+ SG +G  +I  L  NSDTWD KT F+KQK+ +KK  KY+ R++ V     ++ +    +    K   +R D++ QLL YGNV AG +VL+ D+  G++ G++ ER  G+G ++  + G Q   D ++ F      +  ++V +PL   GL   + A                      T  E                           +   EE+          KYL KK +R++A         A+ R LL + +D LI+A ++DP  ++  LLP +     F VYCEFLEPL    D L     ++ LQL  TW REYQV+PGR+HP M MSA  G +L+GIK+
Sbjct:    2 AAGNVIRDGDTVVCYTSDDRVFFQEISPKLTLRIGKANVPLKNAIGHPYGTIFEESEKELIAV--TGGLFPDPVAPE--------------VGDFQVPTNDNRSYTDTNDSQKLSNVEIAELRASGVNGSELIAKLVENSDTWDTKTEFSKQKYLKKKQQKYMPRIQMVRCTAMSLCEVYHARQP-YKILNLRADTLGQLLQYGNVYAGGQVLVVDTCMGLLTGAIAERTQGHGLILAGYEGQQVAADTIRRFGFDAA-VTDSIVTFPLAYVGLLNKDEA----------------------TLVEPXXXXXXXXXXXXXXXXXXXXXXXXVALYSPEEQA---------KYLAKKEARMKARATKVRRSPAQVRDLLRQPSDSLILATQYDPLAMLTALLPLLGLAKPFVVYCEFLEPLTVAFDALQKWDSVINLQLNDTWTREYQVLPGRTHPEMTMSAGSGYILSGIKV 424          
BLAST of NO19G02140 vs. NCBI_GenBank
Match: XP_009832617.1 (hypothetical protein H257_08446 [Aphanomyces astaci] >ETV77507.1 hypothetical protein H257_08446 [Aphanomyces astaci])

HSP 1 Score: 223.0 bits (567), Expect = 2.200e-54
Identity = 146/468 (31.20%), Postives = 249/468 (53.21%), Query Frame = 0
Query:   32 ASQPAALPVIEEGAWVILQMGDGRNFFACAQSKGMMRLGRVNISLSGLIGVPYGSVLEVHPDGLVPLPGTNELYEDLAVGDMDGNEFTRGGGPASVGEYDGATSDNRDFTDTNTAQRMTMVEIEELKNSGASGHAIIQALASNSDTWDKKTAFAKQKWTRKKAHKYVVRVRAVAGNGTNVVQALFVKSGLVKSTAIRPDSIAQLLSYGNVSAGSRVLLFDSYSGVVLGSVLERLGGYGNVVNLFAGAQAHMDHVKYFNLPKEHLARTLVHYPLTGLAEAERAXXXXXXXXXXXXXXXXDKRFLPTAEEEVKARASGKFVVYQKPVGVNERVEEGKIGKGEEEGDSFDRPKWLKYLEKKRSR-LRALAEGRRLLLEGTDCLIVACRHDPAVVVPRLLPFMQEGAAFAVYCEFLEPLVALQDLL--MDAGMLRLQLLSTWWREYQVMPGRSHPHMNMSADGGCVLTGIKI 497
            +S   ++ VI EG  V+    D R FF     + ++R+G+  +S+  + G P+G++ E     LVP+ G   L+ D    +              VG+++  T+DNR +TDTN +Q+++  EI  L+  G +G A+I  L  NSDTWD KT F+KQK+ +KK  KY+ R++ V      +      +    K   +R D I Q+LSYGN+ AG++VLL ++  G++ G++ ER+ G G+++  + G QA +D V+ FN  ++ +  ++V++P   + + ++                   R  P   +  KA  + +  +Y                  +EE   + + K L+ L++++++  ++  + R LL   +D L++   +DP  ++ +LLP +     F VYCE+LEPL +  D L  MD+ ++ LQL  TW REYQ++PGR+HP M MSA  G +L+GIK+
Sbjct:    7 SSSSTSVDVIREGDTVVCYTSDDRVFFQEILPRMVIRIGKSQVSVKCVEGFPFGTIFEEQDKTLVPVEG--GLFPDPVAPE--------------VGDFEVPTNDNRSYTDTNDSQKLSNHEIAALRAQGVNGSALIAKLVENSDTWDTKTEFSKQKYLKKKQQKYMPRIQMVRCTAIALCDVYHSRQP-AKILNLRYDIIGQILSYGNIYAGAQVLLVETCMGLITGAIAERMLGRGHLLAGYEGQQASVDTVRRFNFDQQ-VNDSIVYFPFHYIGQLDQDEATLVATESTAYEV---ARSTPDEIDARKAEVAAQVSMYT-----------------DEEQKKYLQKKELRKLKQRQAKPKKSPTDIRTLLRTPSDSLVIVSHYDPLAMLLQLLPNLGLSRPFVVYCEYLEPLTSAFDALQRMDS-IINLQLNDTWTREYQILPGRTHPEMTMSAGSGYLLSGIKV 435          
BLAST of NO19G02140 vs. NCBI_GenBank
Match: OWZ05798.1 (TRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6 [Phytophthora megakarya])

HSP 1 Score: 217.2 bits (552), Expect = 1.200e-52
Identity = 172/508 (33.86%), Postives = 241/508 (47.44%), Query Frame = 0
Query:   32 ASQPAALP-VIEEGAWVILQMGDGRNFFACAQSKGMMRLGRVNISLSGLIGVPYGSVLEVHPDGLVPLPGTNELYEDLAVGDMDGNEFTRGGGPASVGEYDGATSDNRDFTDTNTAQRMTMVEIEELKNSGASGHAIIQALASNSDTWDKKTAFAKQKWTRKKAHKYVVRVRAVAGNGTNVVQALFVKSGLVKSTAIRPDSIAQLLSYGNVSAGSRVLLFDSYSGVVLGSVLERLGGYGNVVNLFAGAQAHMDHVKYFNLPKEHLARTLVHYPLTGLAEAERAXXXXXXXXXXXXXXXXDKRFLPTAEEEVKARASGKFVVYQKPVGVNERVEEGKIGKGEEEGDSFDRPKWLKYLEKKRSRLRAL------AEGRRLLLEGTDCLIVACRHDPAVVVPRLLPFMQEGAAFAVYCEFLEPLV-ALQDLLMDAGMLRLQLLSTWWREYQVMPGRSHPHMNMSADGGCVLTGIKISDGDKICGGPSMEGVEAQEREAVGGNGNSRKRYRK 532
            AS+   LP VI EG  VI Q  DGR FF        +R+G+   +L  +IG  YG++ E     LV +  T  L+ D  V    G  F   G             DNR + DTN+AQ +   +I EL+  GASG  IIQ L  NS TW+ KT F+KQK+ +KK  KY+ RVR +     ++ +   +K+   K   +R DS+ Q+L YGN+ AG RVL+ D+  G+V GS+ ER GG G ++  + G Q   D ++ FN  K+ L    +HY                             R L   EE+         VV    V  +    E +     E   +F   +  +Y EKK  R +        +  R+   E +D L++A  +DP  ++  LLPF+     F +Y EFLEPL      L     ++ LQL  TW RE QV+PGR+HP MNMSA  G +L+GIKI D   + G  S+  V  Q    V  +G+  K+  K
Sbjct:    9 ASETPRLPYVIYEGDTVICQTSDGRMFFQAVTKDESIRVGKKVANLKPVIGSFYGAIFEEQNKKLVKV--TGGLFPD-PVAPETGESFVPDG-------------DNRHYADTNSAQTLKQTDIGELREKGASGKEIIQKLVENSSTWETKTEFSKQKYLKKKQQKYMPRVRFLRCTAESLCRTYRLKNP-AKICNLREDSLGQILVYGNIFAGGRVLVVDTCMGLVAGSIAERQGGSGCIICPYEGQQPAADILRRFNFDKKTLES--IHY-----------------------MPFKQVRMLEMEEED---------VVEAPKVARDGLTPEERELLAAERAKNFTPEQQRRYAEKKARREQTKIYRQKPSTIRQWAREKSDSLVIAATYDPEEILMALLPFLGRSKPFVIYSEFLEPLTRTFATLQKMEAIIDLQLNETWTRENQVLPGRTHPEMNMSACSGYLLSGIKILDIPPL-GASSIAFVSEQNGSNVESDGSPAKKKPK 464          
The following BLAST results are available for this feature:
BLAST of NO19G02140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23698.14.500e-18572.41trna (adenine-n -)-methyltransferase non-catalytic... [more]
XP_005853789.14.200e-11481.32hypothetical protein NGA_2025000, partial [Nannoch... [more]
XP_008610122.13.300e-5834.12hypothetical protein SDRG_06135 [Saprolegnia dicli... [more]
XP_012204678.13.300e-5834.47hypothetical protein SPRG_10142 [Saprolegnia paras... [more]
XP_005853790.16.200e-5763.87trna (adenine-n -)-methyltransferase non-catalytic... [more]
OQS00261.14.000e-5632.90tRNA (adenine-N(1)-)-methyltransferase non-catalyt... [more]
XP_008874185.14.400e-5531.66hypothetical protein H310_09801 [Aphanomyces invad... [more]
OQR86726.11.300e-5432.84tRNA (adenine-N(1)-)-methyltransferase non-catalyt... [more]
XP_009832617.12.200e-5431.20hypothetical protein H257_08446 [Aphanomyces astac... [more]
OWZ05798.11.200e-5233.86TRNA (adenine-N(1)-)-methyltransferase non-catalyt... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004552NSK004552Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02140.1NO19G02140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|653891gene_7614Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100030g2gene6746Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02140.1NO19G02140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02140 ID=NO19G02140|Name=NO19G02140|organism=Nannochloropsis oceanica|type=gene|length=1602bp
ATGACCGATGTCAGCGGCACCGAAGCTTCCGCAACCGCTTGTTGTACCCG
CACATCTCCTCCTCTTCCACCCATTACAACCTCCCCTCCTCTGGCCTCAC
AACCAGCCGCACTTCCCGTCATCGAAGAAGGCGCCTGGGTAATCCTGCAA
ATGGGAGATGGCCGAAATTTTTTTGCTTGCGCGCAGTCCAAGGGTATGAT
GCGTCTTGGTAGGGTTAATATCTCGCTCAGTGGATTGATAGGTGTGCCCT
ATGGCAGTGTCTTGGAGGTCCACCCGGATGGTCTAGTCCCTCTGCCGGGT
ACGAACGAGCTCTACGAAGACCTTGCCGTGGGCGACATGGACGGAAACGA
ATTCACCCGAGGAGGAGGACCTGCGAGCGTGGGGGAGTATGATGGTGCTA
CCTCGGATAACAGGGATTTTACGGACACAAACACGGCGCAGCGCATGACC
ATGGTCGAGATTGAAGAGCTCAAGAATAGTGGAGCATCTGGCCACGCGAT
CATTCAAGCCTTGGCTTCGAATTCAGACACCTGGGACAAAAAAACGGCGT
TCGCAAAGCAGAAGTGGACCAGGAAAAAGGCGCATAAATACGTCGTGCGC
GTCAGAGCAGTAGCCGGGAACGGGACAAATGTGGTGCAAGCCCTCTTTGT
GAAGTCGGGCCTTGTTAAGAGCACTGCCATCCGTCCAGACAGTATCGCCC
AACTCCTCTCCTATGGCAATGTCTCCGCCGGCTCCCGTGTCTTGCTCTTC
GATTCCTACTCGGGCGTGGTGCTGGGCTCGGTCCTTGAGCGATTGGGAGG
GTATGGAAATGTGGTGAATTTATTCGCGGGGGCTCAGGCTCATATGGACC
ATGTCAAGTATTTTAATTTGCCCAAGGAACATTTGGCCAGGACGCTGGTC
CATTATCCGTTAACGGGATTGGCAGAGGCGGAGAGGGCGAGGAGGAGGAG
GATGGAGGCCGGGGTGGAGGAGGAGGAGGAGGAGGGGGATAAGAGGTTCT
TACCGACGGCCGAGGAGGAGGTCAAGGCGCGGGCGTCGGGGAAGTTCGTC
GTGTACCAGAAGCCAGTAGGTGTGAATGAAAGGGTGGAGGAAGGGAAGAT
TGGCAAGGGAGAGGAAGAAGGGGATAGCTTTGATCGACCCAAGTGGTTGA
AGTACCTGGAGAAGAAGCGGAGTCGTCTCCGGGCCTTAGCGGAGGGCAGG
AGATTGTTGTTGGAAGGGACAGATTGCTTGATCGTAGCCTGTCGGCATGA
TCCGGCAGTTGTGGTGCCGAGGTTGTTGCCTTTCATGCAGGAGGGGGCGG
CGTTTGCAGTGTACTGTGAGTTTTTGGAGCCCTTGGTCGCCTTGCAGGAC
TTGTTGATGGACGCGGGCATGCTGAGACTGCAGTTGCTGAGCACATGGTG
GCGTGAGTATCAGGTTATGCCCGGCAGGTCACATCCGCATATGAACATGA
GTGCGGATGGTGGGTGCGTCTTGACGGGCATAAAGATAAGCGATGGCGAT
AAGATATGTGGGGGGCCCTCGATGGAGGGAGTGGAGGCGCAGGAGCGGGA
GGCGGTGGGGGGAAATGGAAATTCTAGAAAGCGGTACCGGAAGCAGAGAT
GA
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protein sequence of NO19G02140.1

>NO19G02140.1-protein ID=NO19G02140.1-protein|Name=NO19G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=534bp
MTDVSGTEASATACCTRTSPPLPPITTSPPLASQPAALPVIEEGAWVILQ
MGDGRNFFACAQSKGMMRLGRVNISLSGLIGVPYGSVLEVHPDGLVPLPG
TNELYEDLAVGDMDGNEFTRGGGPASVGEYDGATSDNRDFTDTNTAQRMT
MVEIEELKNSGASGHAIIQALASNSDTWDKKTAFAKQKWTRKKAHKYVVR
VRAVAGNGTNVVQALFVKSGLVKSTAIRPDSIAQLLSYGNVSAGSRVLLF
DSYSGVVLGSVLERLGGYGNVVNLFAGAQAHMDHVKYFNLPKEHLARTLV
HYPLTGLAEAERARRRRMEAGVEEEEEEGDKRFLPTAEEEVKARASGKFV
VYQKPVGVNERVEEGKIGKGEEEGDSFDRPKWLKYLEKKRSRLRALAEGR
RLLLEGTDCLIVACRHDPAVVVPRLLPFMQEGAAFAVYCEFLEPLVALQD
LLMDAGMLRLQLLSTWWREYQVMPGRSHPHMNMSADGGCVLTGIKISDGD
KICGGPSMEGVEAQEREAVGGNGNSRKRYRKQR*
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Synonyms
Publications