NO19G02140.1, NO19G02140.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G02140.1
Unique Name	NO19G02140.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1602
Alignment location	chr19:611028..612629 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:611028..612629 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO19G02140.1 vs.
Match: EWM23698.1 (trna (adenine-n -)-methyltransferase non-catalytic subunit trm6 [Nannochloropsis gaditana])

HSP 1 Score: 682.6 bits (1760), Expect = 1.000e-192
Identity = 366/522 (70.11%), Postives = 424/522 (81.23%), Query Frame = 0

Query:   19 SPPLPPITTSPPLASQPAALPVIEEGAWVILQMGDGRNFFACAQSKGMMRLGRVNISLSGLIGVPYGSVLEVHPDGLVPLPGTNELYEDLAVGDMDGNEFTRGGGPASVGEYDGATSDNRDFTDTNTAQRMTMVEIEELKNSGASGHAIIQALASNSDTWDKKTAFAKQKWTRKKAHKYVVRVRAVAGNGTNVVQALFVKSGLVKSTAIRPDSIAQLLSYGNVSAGSRVLLFDSYSGVVLGSVLERLGGYGNVVNLFAGAQAHMDHVKYFNLPKEHLARTLVHYPLTGLAEAERARRRRMEAGVEEEEEEGDKRFLPTAEEEVKARASGKFVVYQKPVGVNERVEEGKIGKGEEEG---DSFDRPKWLKYLEKKRSRLRALAEGRRLLLEGTDCLIVACRHDPAVVVPRLLPFMQEGAAFAVYCEFLEPLVALQDLLMDAGMLRLQLLSTWWREYQVMPGRSHPHMNMSADGGCVLTGIKISDGD----KICGGPSMEGVEAQEREAVGGNGNSRKRYRKQR 534
            S PLP  ++ PP AS PA   VI+EGAWVILQMGDGRNFFACAQ KGMMRLGRV ISLSGLIGVPYGSVLEVHPD LVPLPGT ELYEDL+VGDMDGN+F RGG P  +GEYDG + DNRDF DTNTAQR++M E+EELK SGASG AIIQALASNSDTW+KKTAFAKQKWT+KKAHKYVVRVRA+AG G+NV +ALFVKSGLVK+TAIRPDSIAQLLS+GNV+AG+RVL+ DSYSGVVLG +LERLGG G  ++L+AGAQAH+DH+KYFNLP + LA+TLVH+P + LAE E  R RR   G E  EEE D RFL TAEEE +ARASGKFV++           EG+ G+GEE+    + FDR KWLKYLEKKR RL  LAEGRRLL+EG DCL+VA RHDP+VVVPRLL F+++GAAFAVY E+LEPLVAL   LM+AGMLRLQ+LSTWWREYQ++PGRSHPHM+MS+DGG +LTGIK+S G+    +  G    +G E ++     G GN RKR+R QR
Sbjct:    6 SSPLPSPSSPPPSASPPA---VIQEGAWVILQMGDGRNFFACAQQKGMMRLGRVTISLSGLIGVPYGSVLEVHPDRLVPLPGTTELYEDLSVGDMDGNDFARGGAP--LGEYDGVSLDNRDFADTNTAQRLSMEEVEELKRSGASGQAIIQALASNSDTWEKKTAFAKQKWTQKKAHKYVVRVRALAGCGSNVAEALFVKSGLVKTTAIRPDSIAQLLSFGNVAAGARVLVLDSYSGVVLGCILERLGGEGKAISLYAGAQAHIDHLKYFNLPTDQLAQTLVHFPASALAELEVGRARRRAEGGEGGEEE-DARFLATAEEEARARASGKFVLH--------TTREGE-GQGEEKAAGQEDFDRAKWLKYLEKKRRRLCVLAEGRRLLIEGADCLVVASRHDPSVVVPRLLAFLEDGAAFAVYHEYLEPLVALYASLMEAGMLRLQMLSTWWREYQILPGRSHPHMSMSSDGGYLLTGIKVSQGEAGQREGGGEEERQGQEGEKSSGKEGGGN-RKRHRNQR 511

The following BLAST results are available for this feature:

BLAST of NO19G02140.1 vs.

BLAST of NO19G02140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23698.1	1.000e-192	70.11	trna (adenine-n -)-methyltransferase non-catalytic...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO19G02140	NO19G02140	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02140.1	NO19G02140.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02140.1.cds1	NO19G02140.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr19:611028..612629-
coding sequence from alignment at chr19:611028..612629-

mRNA sequence

>NO19G02140.1 ID=NO19G02140.1|Name=NO19G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1602bp
ATGACCGATGTCAGCGGCACCGAAGCTTCCGCAACCGCTTGTTGTACCCG
CACATCTCCTCCTCTTCCACCCATTACAACCTCCCCTCCTCTGGCCTCAC
AACCAGCCGCACTTCCCGTCATCGAAGAAGGCGCCTGGGTAATCCTGCAA
ATGGGAGATGGCCGAAATTTTTTTGCTTGCGCGCAGTCCAAGGGTATGAT
GCGTCTTGGTAGGGTTAATATCTCGCTCAGTGGATTGATAGGTGTGCCCT
ATGGCAGTGTCTTGGAGGTCCACCCGGATGGTCTAGTCCCTCTGCCGGGT
ACGAACGAGCTCTACGAAGACCTTGCCGTGGGCGACATGGACGGAAACGA
ATTCACCCGAGGAGGAGGACCTGCGAGCGTGGGGGAGTATGATGGTGCTA
CCTCGGATAACAGGGATTTTACGGACACAAACACGGCGCAGCGCATGACC
ATGGTCGAGATTGAAGAGCTCAAGAATAGTGGAGCATCTGGCCACGCGAT
CATTCAAGCCTTGGCTTCGAATTCAGACACCTGGGACAAAAAAACGGCGT
TCGCAAAGCAGAAGTGGACCAGGAAAAAGGCGCATAAATACGTCGTGCGC
GTCAGAGCAGTAGCCGGGAACGGGACAAATGTGGTGCAAGCCCTCTTTGT
GAAGTCGGGCCTTGTTAAGAGCACTGCCATCCGTCCAGACAGTATCGCCC
AACTCCTCTCCTATGGCAATGTCTCCGCCGGCTCCCGTGTCTTGCTCTTC
GATTCCTACTCGGGCGTGGTGCTGGGCTCGGTCCTTGAGCGATTGGGAGG
GTATGGAAATGTGGTGAATTTATTCGCGGGGGCTCAGGCTCATATGGACC
ATGTCAAGTATTTTAATTTGCCCAAGGAACATTTGGCCAGGACGCTGGTC
CATTATCCGTTAACGGGATTGGCAGAGGCGGAGAGGGCGAGGAGGAGGAG
GATGGAGGCCGGGGTGGAGGAGGAGGAGGAGGAGGGGGATAAGAGGTTCT
TACCGACGGCCGAGGAGGAGGTCAAGGCGCGGGCGTCGGGGAAGTTCGTC
GTGTACCAGAAGCCAGTAGGTGTGAATGAAAGGGTGGAGGAAGGGAAGAT
TGGCAAGGGAGAGGAAGAAGGGGATAGCTTTGATCGACCCAAGTGGTTGA
AGTACCTGGAGAAGAAGCGGAGTCGTCTCCGGGCCTTAGCGGAGGGCAGG
AGATTGTTGTTGGAAGGGACAGATTGCTTGATCGTAGCCTGTCGGCATGA
TCCGGCAGTTGTGGTGCCGAGGTTGTTGCCTTTCATGCAGGAGGGGGCGG
CGTTTGCAGTGTACTGTGAGTTTTTGGAGCCCTTGGTCGCCTTGCAGGAC
TTGTTGATGGACGCGGGCATGCTGAGACTGCAGTTGCTGAGCACATGGTG
GCGTGAGTATCAGGTTATGCCCGGCAGGTCACATCCGCATATGAACATGA
GTGCGGATGGTGGGTGCGTCTTGACGGGCATAAAGATAAGCGATGGCGAT
AAGATATGTGGGGGGCCCTCGATGGAGGGAGTGGAGGCGCAGGAGCGGGA
GGCGGTGGGGGGAAATGGAAATTCTAGAAAGCGGTACCGGAAGCAGAGAT
GA

protein sequence of NO19G02140.1

>NO19G02140.1-protein ID=NO19G02140.1-protein|Name=NO19G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=534bp
MTDVSGTEASATACCTRTSPPLPPITTSPPLASQPAALPVIEEGAWVILQ
MGDGRNFFACAQSKGMMRLGRVNISLSGLIGVPYGSVLEVHPDGLVPLPG
TNELYEDLAVGDMDGNEFTRGGGPASVGEYDGATSDNRDFTDTNTAQRMT
MVEIEELKNSGASGHAIIQALASNSDTWDKKTAFAKQKWTRKKAHKYVVR
VRAVAGNGTNVVQALFVKSGLVKSTAIRPDSIAQLLSYGNVSAGSRVLLF
DSYSGVVLGSVLERLGGYGNVVNLFAGAQAHMDHVKYFNLPKEHLARTLV
HYPLTGLAEAERARRRRMEAGVEEEEEEGDKRFLPTAEEEVKARASGKFV
VYQKPVGVNERVEEGKIGKGEEEGDSFDRPKWLKYLEKKRSRLRALAEGR
RLLLEGTDCLIVACRHDPAVVVPRLLPFMQEGAAFAVYCEFLEPLVALQD
LLMDAGMLRLQLLSTWWREYQVMPGRSHPHMNMSADGGCVLTGIKISDGD
KICGGPSMEGVEAQEREAVGGNGNSRKRYRKQR*

mRNA from alignment at chr19:611028..612629-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO19G02140.1 ID=NO19G02140.1|Name=NO19G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1602bp|location=Sequence derived from alignment at chr19:611028..612629- (Nannochloropsis oceanica)
ATGACCGATGTCAGCGGCACCGAAGCTTCCGCAACCGCTTGTTGTACCCG
CACATCTCCTCCTCTTCCACCCATTACAACCTCCCCTCCTCTGGCCTCAC
AACCAGCCGCACTTCCCGTCATCGAAGAAGGCGCCTGGGTAATCCTGCAA
ATGGGAGATGGCCGAAATTTTTTTGCTTGCGCGCAGTCCAAGGGTATGAT
GCGTCTTGGTAGGGTTAATATCTCGCTCAGTGGATTGATAGGTGTGCCCT
ATGGCAGTGTCTTGGAGGTCCACCCGGATGGTCTAGTCCCTCTGCCGGGT
ACGAACGAGCTCTACGAAGACCTTGCCGTGGGCGACATGGACGGAAACGA
ATTCACCCGAGGAGGAGGACCTGCGAGCGTGGGGGAGTATGATGGTGCTA
CCTCGGATAACAGGGATTTTACGGACACAAACACGGCGCAGCGCATGACC
ATGGTCGAGATTGAAGAGCTCAAGAATAGTGGAGCATCTGGCCACGCGAT
CATTCAAGCCTTGGCTTCGAATTCAGACACCTGGGACAAAAAAACGGCGT
TCGCAAAGCAGAAGTGGACCAGGAAAAAGGCGCATAAATACGTCGTGCGC
GTCAGAGCAGTAGCCGGGAACGGGACAAATGTGGTGCAAGCCCTCTTTGT
GAAGTCGGGCCTTGTTAAGAGCACTGCCATCCGTCCAGACAGTATCGCCC
AACTCCTCTCCTATGGCAATGTCTCCGCCGGCTCCCGTGTCTTGCTCTTC
GATTCCTACTCGGGCGTGGTGCTGGGCTCGGTCCTTGAGCGATTGGGAGG
GTATGGAAATGTGGTGAATTTATTCGCGGGGGCTCAGGCTCATATGGACC
ATGTCAAGTATTTTAATTTGCCCAAGGAACATTTGGCCAGGACGCTGGTC
CATTATCCGTTAACGGGATTGGCAGAGGCGGAGAGGGCGAGGAGGAGGAG
GATGGAGGCCGGGGTGGAGGAGGAGGAGGAGGAGGGGGATAAGAGGTTCT
TACCGACGGCCGAGGAGGAGGTCAAGGCGCGGGCGTCGGGGAAGTTCGTC
GTGTACCAGAAGCCAGTAGGTGTGAATGAAAGGGTGGAGGAAGGGAAGAT
TGGCAAGGGAGAGGAAGAAGGGGATAGCTTTGATCGACCCAAGTGGTTGA
AGTACCTGGAGAAGAAGCGGAGTCGTCTCCGGGCCTTAGCGGAGGGCAGG
AGATTGTTGTTGGAAGGGACAGATTGCTTGATCGTAGCCTGTCGGCATGA
TCCGGCAGTTGTGGTGCCGAGGTTGTTGCCTTTCATGCAGGAGGGGGCGG
CGTTTGCAGTGTACTGTGAGTTTTTGGAGCCCTTGGTCGCCTTGCAGGAC
TTGTTGATGGACGCGGGCATGCTGAGACTGCAGTTGCTGAGCACATGGTG
GCGTGAGTATCAGGTTATGCCCGGCAGGTCACATCCGCATATGAACATGA
GTGCGGATGGTGGGTGCGTCTTGACGGGCATAAAGATAAGCGATGGCGAT
AAGATATGTGGGGGGCCCTCGATGGAGGGAGTGGAGGCGCAGGAGCGGGA
GGCGGTGGGGGGAAATGGAAATTCTAGAAAGCGGTACCGGAAGCAGAGAT
GA

Coding sequence (CDS) from alignment at chr19:611028..612629-

>NO19G02140.1 ID=NO19G02140.1|Name=NO19G02140.1|organism=Nannochloropsis oceanica|type=CDS|length=1602bp|location=Sequence derived from alignment at chr19:611028..612629- (Nannochloropsis oceanica)
ATGACCGATGTCAGCGGCACCGAAGCTTCCGCAACCGCTTGTTGTACCCG
CACATCTCCTCCTCTTCCACCCATTACAACCTCCCCTCCTCTGGCCTCAC
AACCAGCCGCACTTCCCGTCATCGAAGAAGGCGCCTGGGTAATCCTGCAA
ATGGGAGATGGCCGAAATTTTTTTGCTTGCGCGCAGTCCAAGGGTATGAT
GCGTCTTGGTAGGGTTAATATCTCGCTCAGTGGATTGATAGGTGTGCCCT
ATGGCAGTGTCTTGGAGGTCCACCCGGATGGTCTAGTCCCTCTGCCGGGT
ACGAACGAGCTCTACGAAGACCTTGCCGTGGGCGACATGGACGGAAACGA
ATTCACCCGAGGAGGAGGACCTGCGAGCGTGGGGGAGTATGATGGTGCTA
CCTCGGATAACAGGGATTTTACGGACACAAACACGGCGCAGCGCATGACC
ATGGTCGAGATTGAAGAGCTCAAGAATAGTGGAGCATCTGGCCACGCGAT
CATTCAAGCCTTGGCTTCGAATTCAGACACCTGGGACAAAAAAACGGCGT
TCGCAAAGCAGAAGTGGACCAGGAAAAAGGCGCATAAATACGTCGTGCGC
GTCAGAGCAGTAGCCGGGAACGGGACAAATGTGGTGCAAGCCCTCTTTGT
GAAGTCGGGCCTTGTTAAGAGCACTGCCATCCGTCCAGACAGTATCGCCC
AACTCCTCTCCTATGGCAATGTCTCCGCCGGCTCCCGTGTCTTGCTCTTC
GATTCCTACTCGGGCGTGGTGCTGGGCTCGGTCCTTGAGCGATTGGGAGG
GTATGGAAATGTGGTGAATTTATTCGCGGGGGCTCAGGCTCATATGGACC
ATGTCAAGTATTTTAATTTGCCCAAGGAACATTTGGCCAGGACGCTGGTC
CATTATCCGTTAACGGGATTGGCAGAGGCGGAGAGGGCGAGGAGGAGGAG
GATGGAGGCCGGGGTGGAGGAGGAGGAGGAGGAGGGGGATAAGAGGTTCT
TACCGACGGCCGAGGAGGAGGTCAAGGCGCGGGCGTCGGGGAAGTTCGTC
GTGTACCAGAAGCCAGTAGGTGTGAATGAAAGGGTGGAGGAAGGGAAGAT
TGGCAAGGGAGAGGAAGAAGGGGATAGCTTTGATCGACCCAAGTGGTTGA
AGTACCTGGAGAAGAAGCGGAGTCGTCTCCGGGCCTTAGCGGAGGGCAGG
AGATTGTTGTTGGAAGGGACAGATTGCTTGATCGTAGCCTGTCGGCATGA
TCCGGCAGTTGTGGTGCCGAGGTTGTTGCCTTTCATGCAGGAGGGGGCGG
CGTTTGCAGTGTACTGTGAGTTTTTGGAGCCCTTGGTCGCCTTGCAGGAC
TTGTTGATGGACGCGGGCATGCTGAGACTGCAGTTGCTGAGCACATGGTG
GCGTGAGTATCAGGTTATGCCCGGCAGGTCACATCCGCATATGAACATGA
GTGCGGATGGTGGGTGCGTCTTGACGGGCATAAAGATAAGCGATGGCGAT
AAGATATGTGGGGGGCCCTCGATGGAGGGAGTGGAGGCGCAGGAGCGGGA
GGCGGTGGGGGGAAATGGAAATTCTAGAAAGCGGTACCGGAAGCAGAGAT
GA

Synonyms

Publications